© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5597.t1 |
| Gene name | |
| Location | scaffold_13:534625..536414 |
| Strand | + |
| Gene length (bp) | 1789 |
| Transcript length (bp) | 1566 |
| Coding sequence length (bp) | 1566 |
| Protein length (aa) | 522 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 3.0E-27 | 95 | 231 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.16 | 0.14 | 2.19 |
| 5d_25C | Five days - 25 degrees Celsius | 0.51 | 0.00 | 1.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.98 | 0.00 | 2.02 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.08 | 0.00 | 0.24 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.20 | 0.00 | 0.52 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.75 | 0.16 | 3.33 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.169156 | no |
| 3d_25C | 7d_25C | 0.831320 | no |
| 3d_25C | 7d_15C | 0.072679 | no |
| 3d_25C | 7d_30C | 0.514802 | no |
| 3d_25C | 10d_25C | 0.080462 | no |
| 5d_25C | 7d_25C | 0.339870 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.044784 | yes |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.094135 | no |
| 7d_25C | 7d_30C | 0.380482 | no |
| 7d_25C | 10d_25C | 0.081384 | no |
| 7d_15C | 7d_30C | 0.038386 | yes |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.080462 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5597.t1 MQLLGFLIGALAAAAQATSTSNVTKFTSFAQNLGLSAANTRALAARYAKADDSVAILNVACLTAQGVLGAANVDT SPLNQTIVDVNWSESCFAEPHCIIQPEVAQDVSTAVKVIGFFQVKFAVRSGGHSPNPGWSSIGSQGILIDLSKLS SVSLSSDGKVASVGPGLRWGEVTEALNSEKAVVLGGRLPSVGVGGLILGGGYHHLSTRYGLAADNVHNFEVVLSN GTIVDANAEQNNDLFRALKGGGPNFGIVSRYDLNTVPVYEVWAEMRYYSTDQAPAVLDAFTEWQLNGASDVKSVV AIDISLTSIVIGLVYSEPAVKPSAFAPFYDLEPLSIPVPGMNTTFVVIDELLASAFPTAKARHDYRGCSTRINAN LTRDVYDYWVEKAQAAYQATGVNQTFALQYVGENLIQKGIENGGNALNIPSGPQQWWTTIVDWENEADDEAARSV SIETTKYWKKLAKERGLDVSLTYMNDASRDQNPLESYGATSLKQLKATSKKYDPTQMLQRLQNNGFLLSKA* |
| Coding | >Pro_DTO377G3_2|g5597.t1 ATGCAGCTACTGGGTTTCCTGATCGGGGCGCTTGCAGCGGCAGCTCAAGCAACCTCCACGAGCAATGTGACCAAA TTCACTTCCTTTGCGCAGAACCTCGGGCTGTCCGCAGCCAATACACGTGCTTTGGCAGCGCGATATGCAAAGGCT GACGACTCGGTTGCTATCTTGAACGTTGCATGTTTGACTGCGCAGGGTGTGCTTGGCGCTGCAAATGTTGATACA TCGCCTCTCAACCAAACTATTGTGGATGTAAACTGGTCCGAATCGTGTTTTGCAGAGCCGCACTGCATCATTCAG CCCGAGGTAGCCCAGGACGTTTCTACGGCGGTGAAAGTCATAGGTTTCTTCCAGGTGAAATTCGCAGTGCGCAGT GGCGGACATTCGCCGAACCCAGGATGGTCCAGCATTGGGAGCCAAGGTATTCTGATCGATTTGTCTAAACTAAGC TCTGTCAGCCTGTCAAGCGATGGCAAGGTAGCGAGTGTCGGTCCGGGTCTTCGCTGGGGCGAGGTCACGGAGGCA TTGAACTCAGAGAAGGCCGTGGTGCTGGGGGGAAGACTGCCCTCGGTGGGAGTCGGTGGTCTTATTCTCGGAGGA GGATATCATCACCTCTCTACTCGCTATGGCCTAGCGGCGGACAATGTGCATAATTTCGAGGTTGTTCTGTCAAAT GGAACAATTGTTGACGCGAATGCGGAGCAGAACAACGATCTATTCCGTGCTCTCAAGGGAGGTGGCCCCAACTTC GGCATCGTTTCTCGTTACGATCTAAACACTGTTCCGGTCTATGAAGTCTGGGCGGAAATGAGGTATTATTCCACC GATCAAGCTCCCGCCGTCCTGGATGCCTTTACGGAGTGGCAGCTCAACGGAGCCTCGGATGTCAAATCGGTCGTG GCTATTGATATCTCTTTGACCTCTATAGTCATTGGGCTTGTTTACTCCGAGCCGGCCGTCAAGCCTAGCGCATTT GCACCATTTTATGATCTGGAGCCACTGTCTATTCCGGTCCCCGGAATGAACACCACGTTTGTCGTTATCGATGAA CTCCTGGCATCCGCATTTCCCACTGCGAAGGCTCGACACGACTATCGCGGCTGCAGTACCCGCATCAACGCCAAC TTGACCCGGGATGTCTACGACTACTGGGTGGAGAAGGCCCAAGCGGCTTACCAAGCCACTGGTGTCAACCAAACC TTCGCTCTGCAATACGTGGGAGAGAATCTCATCCAGAAAGGGATTGAGAATGGTGGAAATGCCCTGAATATCCCA TCTGGCCCCCAGCAATGGTGGACCACCATTGTGGACTGGGAAAACGAGGCTGATGATGAGGCCGCGCGATCCGTT TCCATTGAGACGACAAAGTACTGGAAGAAACTGGCCAAGGAGCGTGGGTTGGATGTGTCCTTGACGTACATGAAC GACGCCTCCCGCGACCAGAATCCCCTGGAATCCTACGGGGCGACAAGTCTAAAGCAGCTGAAGGCAACTTCCAAG AAATACGACCCTACGCAGATGCTCCAAAGGTTGCAGAACAACGGGTTCCTGCTTTCGAAGGCGTAG |
| Transcript | >Pro_DTO377G3_2|g5597.t1 ATGCAGCTACTGGGTTTCCTGATCGGGGCGCTTGCAGCGGCAGCTCAAGCAACCTCCACGAGCAATGTGACCAAA TTCACTTCCTTTGCGCAGAACCTCGGGCTGTCCGCAGCCAATACACGTGCTTTGGCAGCGCGATATGCAAAGGCT GACGACTCGGTTGCTATCTTGAACGTTGCATGTTTGACTGCGCAGGGTGTGCTTGGCGCTGCAAATGTTGATACA TCGCCTCTCAACCAAACTATTGTGGATGTAAACTGGTCCGAATCGTGTTTTGCAGAGCCGCACTGCATCATTCAG CCCGAGGTAGCCCAGGACGTTTCTACGGCGGTGAAAGTCATAGGTTTCTTCCAGGTGAAATTCGCAGTGCGCAGT GGCGGACATTCGCCGAACCCAGGATGGTCCAGCATTGGGAGCCAAGGTATTCTGATCGATTTGTCTAAACTAAGC TCTGTCAGCCTGTCAAGCGATGGCAAGGTAGCGAGTGTCGGTCCGGGTCTTCGCTGGGGCGAGGTCACGGAGGCA TTGAACTCAGAGAAGGCCGTGGTGCTGGGGGGAAGACTGCCCTCGGTGGGAGTCGGTGGTCTTATTCTCGGAGGA GGATATCATCACCTCTCTACTCGCTATGGCCTAGCGGCGGACAATGTGCATAATTTCGAGGTTGTTCTGTCAAAT GGAACAATTGTTGACGCGAATGCGGAGCAGAACAACGATCTATTCCGTGCTCTCAAGGGAGGTGGCCCCAACTTC GGCATCGTTTCTCGTTACGATCTAAACACTGTTCCGGTCTATGAAGTCTGGGCGGAAATGAGGTATTATTCCACC GATCAAGCTCCCGCCGTCCTGGATGCCTTTACGGAGTGGCAGCTCAACGGAGCCTCGGATGTCAAATCGGTCGTG GCTATTGATATCTCTTTGACCTCTATAGTCATTGGGCTTGTTTACTCCGAGCCGGCCGTCAAGCCTAGCGCATTT GCACCATTTTATGATCTGGAGCCACTGTCTATTCCGGTCCCCGGAATGAACACCACGTTTGTCGTTATCGATGAA CTCCTGGCATCCGCATTTCCCACTGCGAAGGCTCGACACGACTATCGCGGCTGCAGTACCCGCATCAACGCCAAC TTGACCCGGGATGTCTACGACTACTGGGTGGAGAAGGCCCAAGCGGCTTACCAAGCCACTGGTGTCAACCAAACC TTCGCTCTGCAATACGTGGGAGAGAATCTCATCCAGAAAGGGATTGAGAATGGTGGAAATGCCCTGAATATCCCA TCTGGCCCCCAGCAATGGTGGACCACCATTGTGGACTGGGAAAACGAGGCTGATGATGAGGCCGCGCGATCCGTT TCCATTGAGACGACAAAGTACTGGAAGAAACTGGCCAAGGAGCGTGGGTTGGATGTGTCCTTGACGTACATGAAC GACGCCTCCCGCGACCAGAATCCCCTGGAATCCTACGGGGCGACAAGTCTAAAGCAGCTGAAGGCAACTTCCAAG AAATACGACCCTACGCAGATGCTCCAAAGGTTGCAGAACAACGGGTTCCTGCTTTCGAAGGCGTAG |
| Gene | >Pro_DTO377G3_2|g5597.t1 ATGCAGCTACTGGGTTTCCTGATCGGGGCGCTTGCAGCGGCAGCTCAAGCAACCTCCACGAGCAATGTGACCAAA TTCACTTCCTTTGCGCAGAACCTCGGGCTGTCCGCAGCCAATACACGTGCTTTGGCAGCGCGATATGCAAAGGCT GACGACTCGGTTGCTATCTTGAACGTTGCATGTTTGACTGCGCAGGGTGTGCTTGGCGCTGCAAATGTTGATACA TCGCCTCTCAACCAAACTATTGTGGATGTAAACTGGTAGGTTGCTATTTATCGGACCTTTGTATGTTCGGGCTTT TTACTGACCAATCAATGAAGGTCCGAATCGTGTTTTGCAGAGCCGCACTGCATCATTCAGCCCGAGGTAGCCCAG GACGTTTCTACGGCGGTGAAAGTCATAGGTTTCTTCCAGGTGAAATTCGCAGTGCGCAGTGGCGGACATTCGCCG AACCCAGGATGGTCCAGCATTGGGAGCCAAGGTATTCTGATCGATTTGTCTAAACTAAGCTCTGTCAGCCTGTCA AGCGATGGCAAGGTAGCGAGTGTCGGTCCGGGTCTTCGCTGGGGCGAGGTCACGGAGGCATTGAACTCAGAGAAG GCCGTGGTGCTGGGGGGAAGACTGCCCTCGGTGGGAGTCGGTGGTCTTATTCTCGGAGGTAAGTAAAGGTGTCTA TCCATGGACCCAAAGATGCAGTCTAATCAGGAGCTACAGGAGGATATCATCACCTCTCTACTCGCTATGGCCTAG CGGCGGACAATGTGCATAATTTCGAGGTTGTTCTGTCAAATGGAACAATTGTTGACGCGAATGCGGAGCAGAACA ACGATCTATTCCGTGCTCTCAAGGGAGGTGGCCCCAACTTCGGCATCGTTTCTCGTTACGATCTAAACACTGTTC CGGTCTATGAAGTCTGGGCGGAAATGAGGTATTATTCCACCGATCAAGCTCCCGCCGTCCTGGATGCCTTTACGG AGTGGCAGCTCAACGGAGCCTCGGATGTCAAATCGGTCGTGGCTATTGATATCTCTTTGACCTCTATAGTCATTG GGCTTGTTTACTCCGAGCCGGCCGTCAAGCCTAGCGCATTTGCACCATTTTATGATCTGGAGCCACTGTCTATTC CGGTCCCCGGAATGAACACCACGTTTGTCGTTATCGATGAACTCCTGGCATCCGCATTTCCCACTGCGAAGGCTC GGTAAGTAATTCATCAAATCCCGCTCCCTCTTCAGACAGAACTAATGCCTTCCCAGACACGACTATCGCGGCTGC AGTACCCGCATCAACGCCAACTTGACCCGGGATGTCTACGACTACTGGGTGGAGAAGGCCCAAGCGGCTTACCAA GCCACTGGTGTCAACCAAACCTTCGCTCTGCAATACGTGGGAGAGAATCTCATCCAGAAAGGGATTGAGAATGGT GGAAATGCCCTGAATATCCCATCTGGCCCCCAGCAATGTAAGACTCACACTTCTCATCTGATACGAAACCGTCCT AATGTCAGCTACAGGGTGGACCACCATTGTGGACTGGGAAAACGAGGCTGATGATGAGGCCGCGCGATCCGTTTC CATTGAGACGACAAAGTACTGGAAGAAACTGGCCAAGGAGCGTGGGTTGGATGTGTCCTTGACGTACATGAACGA CGCCTCCCGCGACCAGAATCCCCTGGAATCCTACGGGGCGACAAGTCTAAAGCAGCTGAAGGCAACTTCCAAGAA ATACGACCCTACGCAGATGCTCCAAAGGTTGCAGAACAACGGGTTCCTGCTTTCGAAGGCGTAG |