© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5596.t1 |
| Gene name | |
| Location | scaffold_13:532789..533881 |
| Strand | - |
| Gene length (bp) | 1092 |
| Transcript length (bp) | 1038 |
| Coding sequence length (bp) | 1038 |
| Protein length (aa) | 346 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 4.6E-15 | 38 | 183 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 9.7E-07 | 48 | 171 |
| PF08659 | KR | KR domain | 3.9E-05 | 39 | 132 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 45 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 37.80 | 19.82 | 55.77 |
| 5d_25C | Five days - 25 degrees Celsius | 27.12 | 12.76 | 41.48 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.37 | 10.37 | 36.37 |
| 10d_25C | Ten days - 25 degrees Celsius | 13.72 | 5.06 | 22.38 |
| 7d_15C | Seven days - 15 degrees Celsius | 22.37 | 8.52 | 36.22 |
| 7d_30C | Seven days - 30 degrees Celsius | 33.45 | 16.55 | 50.35 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.258071 | no |
| 3d_25C | 7d_25C | 0.093559 | no |
| 3d_25C | 7d_15C | 0.077004 | no |
| 3d_25C | 7d_30C | 0.741301 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.703407 | no |
| 5d_25C | 7d_15C | 0.619296 | no |
| 5d_25C | 7d_30C | 0.539933 | no |
| 5d_25C | 10d_25C | 0.020660 | yes |
| 7d_25C | 7d_15C | 0.929334 | no |
| 7d_25C | 7d_30C | 0.255376 | no |
| 7d_25C | 10d_25C | 0.092061 | no |
| 7d_15C | 7d_30C | 0.213479 | no |
| 7d_15C | 10d_25C | 0.143891 | no |
| 7d_30C | 10d_25C | 0.001804 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5596.t1 MGSKFDVTPEKQASLPRFFYNQITVKPAPVKGVSLEGKTALVTGSNIGVGLETSRQLLDLGLSKLILAVRSDEKG QAAKKDLAAGRDLSDDSIEVWKLDQSDYDSVVAFAERTKSLPRLDIVVLNIGIANATRVFNAKTGHDEMIQVNYL STALLAILLLPVVKEKRAAQGGPSRITIVSSEVAAWTPFKEKKSFPLLAALDQKKTKVDPLDRMMVSKLLGQFFL AHLASVVPPSVAIINATSPGSVFDSEFNREHDKTFAGAIAKIVMRRMANTAAVGARMVTDAAVNHGEETHGEFLS FQKLVPLAPIIYSEEGKKISEQLWKETSEELAFANVDEILKTISE* |
| Coding | >Pro_DTO377G3_2|g5596.t1 ATGGGGTCCAAATTCGATGTGACTCCGGAAAAGCAGGCCAGCCTGCCTCGCTTCTTCTACAACCAGATTACCGTG AAACCCGCCCCGGTCAAGGGAGTCAGCCTGGAGGGCAAGACCGCCCTGGTGACCGGATCCAACATCGGCGTCGGC CTGGAGACCAGTCGCCAGCTCCTCGACCTGGGACTCAGCAAGCTCATTCTCGCTGTGCGCAGTGACGAGAAAGGC CAGGCGGCTAAAAAGGATCTAGCCGCTGGCCGGGATCTCTCCGACGATAGCATCGAGGTCTGGAAGCTTGACCAG TCCGACTATGACTCTGTCGTCGCCTTTGCGGAGCGCACCAAGAGCCTCCCCCGACTAGACATTGTCGTCCTGAAT ATCGGCATTGCCAACGCCACGCGCGTCTTCAACGCCAAGACAGGCCATGATGAGATGATCCAGGTGAACTACCTC TCCACCGCCCTGCTGGCAATCCTCCTGCTCCCTGTCGTCAAGGAAAAACGCGCTGCCCAAGGAGGTCCGAGCCGC ATTACGATCGTCTCATCAGAGGTCGCCGCATGGACTCCCTTCAAGGAGAAGAAAAGCTTCCCGCTGCTGGCAGCG CTCGACCAGAAGAAGACCAAGGTTGACCCCCTCGATCGCATGATGGTCTCTAAGCTTCTAGGGCAGTTTTTCCTG GCACATCTGGCCTCGGTTGTCCCGCCTTCCGTTGCCATCATCAATGCCACCTCGCCGGGCTCTGTCTTCGATTCC GAATTCAACCGTGAGCACGATAAGACTTTCGCCGGAGCTATCGCCAAGATCGTAATGCGCCGCATGGCCAACACT GCTGCTGTTGGAGCCCGAATGGTCACCGATGCAGCTGTCAACCATGGCGAGGAGACCCATGGCGAGTTCCTGTCC TTCCAGAAATTGGTGCCTTTGGCACCGATTATCTACAGCGAAGAGGGGAAGAAGATCTCAGAGCAGCTCTGGAAA GAGACCAGCGAAGAGCTCGCCTTTGCGAATGTGGATGAGATTCTCAAGACTATTTCAGAATAA |
| Transcript | >Pro_DTO377G3_2|g5596.t1 ATGGGGTCCAAATTCGATGTGACTCCGGAAAAGCAGGCCAGCCTGCCTCGCTTCTTCTACAACCAGATTACCGTG AAACCCGCCCCGGTCAAGGGAGTCAGCCTGGAGGGCAAGACCGCCCTGGTGACCGGATCCAACATCGGCGTCGGC CTGGAGACCAGTCGCCAGCTCCTCGACCTGGGACTCAGCAAGCTCATTCTCGCTGTGCGCAGTGACGAGAAAGGC CAGGCGGCTAAAAAGGATCTAGCCGCTGGCCGGGATCTCTCCGACGATAGCATCGAGGTCTGGAAGCTTGACCAG TCCGACTATGACTCTGTCGTCGCCTTTGCGGAGCGCACCAAGAGCCTCCCCCGACTAGACATTGTCGTCCTGAAT ATCGGCATTGCCAACGCCACGCGCGTCTTCAACGCCAAGACAGGCCATGATGAGATGATCCAGGTGAACTACCTC TCCACCGCCCTGCTGGCAATCCTCCTGCTCCCTGTCGTCAAGGAAAAACGCGCTGCCCAAGGAGGTCCGAGCCGC ATTACGATCGTCTCATCAGAGGTCGCCGCATGGACTCCCTTCAAGGAGAAGAAAAGCTTCCCGCTGCTGGCAGCG CTCGACCAGAAGAAGACCAAGGTTGACCCCCTCGATCGCATGATGGTCTCTAAGCTTCTAGGGCAGTTTTTCCTG GCACATCTGGCCTCGGTTGTCCCGCCTTCCGTTGCCATCATCAATGCCACCTCGCCGGGCTCTGTCTTCGATTCC GAATTCAACCGTGAGCACGATAAGACTTTCGCCGGAGCTATCGCCAAGATCGTAATGCGCCGCATGGCCAACACT GCTGCTGTTGGAGCCCGAATGGTCACCGATGCAGCTGTCAACCATGGCGAGGAGACCCATGGCGAGTTCCTGTCC TTCCAGAAATTGGTGCCTTTGGCACCGATTATCTACAGCGAAGAGGGGAAGAAGATCTCAGAGCAGCTCTGGAAA GAGACCAGCGAAGAGCTCGCCTTTGCGAATGTGGATGAGATTCTCAAGACTATTTCAGAATAA |
| Gene | >Pro_DTO377G3_2|g5596.t1 ATGGGGTCCAAATTCGATGTGACTCCGGAAAAGCAGGCCAGCCTGCCTCGCTTCTTCTACAACCAGATTACCGTG AAACCCGCCCCGGTCAAGGGAGTCAGCCTGGAGGGCAAGACCGCCCTGGTGACCGGATCCAACATCGGCGTCGGC CTGGAGACCAGTCGCCAGCTCCTCGACCTGGGACTCAGCAAGCTCATTCTCGCTGTGCGCAGTGACGAGAAAGGC CAGGCGGCTAAAAAGGATCTAGCCGCTGGCCGGGATCTCTCCGACGATAGCATCGAGGTCTGGAAGCTTGACCAG TCCGACTATGACTCTGTCGTCGCCTTTGCGGAGCGCACCAAGAGCCTCCCCCGACTAGACATTGTCGTCCTGAAT ATCGGCATTGCCAACGCCACGCGCGTCTTCAACGCCAAGACAGGCCATGATGAGATGATCCAGGTGAACTACCTC TCCACCGCCCTGCTGGCAATCCTCCTGCTCCCTGTCGTCAAGGAAAAACGCGCTGCCCAAGGAGGTCCGAGCCGC ATTACGATCGTCTCATCAGAGGTCGCCGCATGGACTCCCTTCAAGGAGAAGAAAAGCTTCCCGCTGCTGGCAGCG CTCGACCAGAAGAAGACCAAGGTTGACCCCCTCGATCGCATGATGGTCTCTAAGCTTCTAGGGCAGTTTTTCCTG GCACATCTGGCCTCGGTTGTCCCGCCTTCCGTTGCCATCATCAATGCCACCTCGCCGGGCTCTGTCTTCGATTCC GAATTCAACCGTGAGCACGATAAGACTTTCGCCGGAGCTATCGCCAAGATCGTAATGCGCCGCATGGCCAACACT GCTGCTGTTGGAGCCCGAATGGTCACCGATGCAGCTGTCAACCATGGCGAGGAGACCCATGGCGAGTTCCTGTCC TTCCAGAAATTGGTGCCGTAAGTTATCCCTATGTTGACCATGATTAGAGCTATTGCTAAGATACTTTACAGTTTG GCACCGATTATCTACAGCGAAGAGGGGAAGAAGATCTCAGAGCAGCTCTGGAAAGAGACCAGCGAAGAGCTCGCC TTTGCGAATGTGGATGAGATTCTCAAGACTATTTCAGAATAA |