© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5558.t1 |
| Gene name | |
| Location | scaffold_13:435461..436262 |
| Strand | + |
| Gene length (bp) | 801 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 801 |
| Protein length (aa) | 267 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03328 | HpcH_HpaI | HpcH/HpaI aldolase/citrate lyase family | 3.8E-32 | 30 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 52 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.73 | 0.0 | 1.77 |
| 5d_25C | Five days - 25 degrees Celsius | 0.11 | 0.0 | 0.38 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.57 | 0.0 | 1.33 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.18 | 0.0 | 0.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.28 | 0.0 | 0.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.12 | 0.0 | 2.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.285053 | no |
| 3d_25C | 7d_25C | 0.831886 | no |
| 3d_25C | 7d_15C | 0.369022 | no |
| 3d_25C | 7d_30C | 0.655863 | no |
| 3d_25C | 10d_25C | 0.245345 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.266986 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.429367 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.180996 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.159527 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5558.t1 MAYATPLTTTIDNPRLRLLNKLKAGEYPLMTFMAIPSIRQAQIVALTGVDGIIIDCEHGHIGDDAMHNSVAAISA LGVSPVIRIRGPAHDILKRALDTGAHGIMVPQINNAEEAAQIVASSKFPPQGVRGQGSAFPAIAHGLTTPEYMKS ANETIITMIQIETRAGVENVDAICAVPGVDVVFIGPNDLAQSLLGYTPARGDEPEFVAAIDKIIAAARKHGKWAA RMVNNGTVAKEARERYDTVAITGDTKAIQNWYMAEFEIARS* |
| Coding | >Pro_DTO377G3_2|g5558.t1 ATGGCTTACGCTACTCCCCTCACTACCACGATCGATAACCCTCGCTTGAGACTTCTCAACAAGCTCAAGGCCGGC GAGTACCCGCTCATGACCTTCATGGCCATCCCCTCCATCCGCCAGGCCCAGATCGTTGCCTTGACCGGCGTCGAC GGTATCATTATTGATTGTGAGCACGGTCACATTGGTGACGATGCTATGCACAACTCTGTCGCTGCCATTTCCGCC CTTGGTGTCTCTCCCGTCATCCGAATCCGTGGCCCTGCCCACGATATCCTCAAGCGTGCCCTCGATACCGGTGCC CACGGTATCATGGTTCCCCAAATCAACAATGCTGAAGAGGCCGCACAAATTGTCGCTTCCTCCAAGTTCCCTCCT CAGGGTGTTCGTGGCCAGGGTTCCGCTTTCCCCGCAATTGCCCACGGCCTCACCACTCCTGAGTACATGAAGTCC GCCAACGAGACCATCATCACCATGATTCAAATAGAGACCCGTGCCGGTGTCGAGAACGTCGATGCTATCTGCGCT GTGCCCGGTGTGGACGTTGTCTTCATTGGACCCAACGATCTTGCCCAGTCCTTGCTTGGATACACACCTGCTCGC GGTGACGAGCCTGAGTTTGTTGCTGCTATTGATAAGATTATTGCTGCTGCGCGCAAGCATGGCAAGTGGGCTGCT CGCATGGTTAACAATGGTACAGTAGCCAAGGAGGCTCGGGAGCGTTACGATACCGTCGCCATTACTGGTGACACC AAGGCGATTCAGAACTGGTACATGGCAGAGTTTGAGATTGCCCGTTCATGA |
| Transcript | >Pro_DTO377G3_2|g5558.t1 ATGGCTTACGCTACTCCCCTCACTACCACGATCGATAACCCTCGCTTGAGACTTCTCAACAAGCTCAAGGCCGGC GAGTACCCGCTCATGACCTTCATGGCCATCCCCTCCATCCGCCAGGCCCAGATCGTTGCCTTGACCGGCGTCGAC GGTATCATTATTGATTGTGAGCACGGTCACATTGGTGACGATGCTATGCACAACTCTGTCGCTGCCATTTCCGCC CTTGGTGTCTCTCCCGTCATCCGAATCCGTGGCCCTGCCCACGATATCCTCAAGCGTGCCCTCGATACCGGTGCC CACGGTATCATGGTTCCCCAAATCAACAATGCTGAAGAGGCCGCACAAATTGTCGCTTCCTCCAAGTTCCCTCCT CAGGGTGTTCGTGGCCAGGGTTCCGCTTTCCCCGCAATTGCCCACGGCCTCACCACTCCTGAGTACATGAAGTCC GCCAACGAGACCATCATCACCATGATTCAAATAGAGACCCGTGCCGGTGTCGAGAACGTCGATGCTATCTGCGCT GTGCCCGGTGTGGACGTTGTCTTCATTGGACCCAACGATCTTGCCCAGTCCTTGCTTGGATACACACCTGCTCGC GGTGACGAGCCTGAGTTTGTTGCTGCTATTGATAAGATTATTGCTGCTGCGCGCAAGCATGGCAAGTGGGCTGCT CGCATGGTTAACAATGGTACAGTAGCCAAGGAGGCTCGGGAGCGTTACGATACCGTCGCCATTACTGGTGACACC AAGGCGATTCAGAACTGGTACATGGCAGAGTTTGAGATTGCCCGTTCATGA |
| Gene | >Pro_DTO377G3_2|g5558.t1 ATGGCTTACGCTACTCCCCTCACTACCACGATCGATAACCCTCGCTTGAGACTTCTCAACAAGCTCAAGGCCGGC GAGTACCCGCTCATGACCTTCATGGCCATCCCCTCCATCCGCCAGGCCCAGATCGTTGCCTTGACCGGCGTCGAC GGTATCATTATTGATTGTGAGCACGGTCACATTGGTGACGATGCTATGCACAACTCTGTCGCTGCCATTTCCGCC CTTGGTGTCTCTCCCGTCATCCGAATCCGTGGCCCTGCCCACGATATCCTCAAGCGTGCCCTCGATACCGGTGCC CACGGTATCATGGTTCCCCAAATCAACAATGCTGAAGAGGCCGCACAAATTGTCGCTTCCTCCAAGTTCCCTCCT CAGGGTGTTCGTGGCCAGGGTTCCGCTTTCCCCGCAATTGCCCACGGCCTCACCACTCCTGAGTACATGAAGTCC GCCAACGAGACCATCATCACCATGATTCAAATAGAGACCCGTGCCGGTGTCGAGAACGTCGATGCTATCTGCGCT GTGCCCGGTGTGGACGTTGTCTTCATTGGACCCAACGATCTTGCCCAGTCCTTGCTTGGATACACACCTGCTCGC GGTGACGAGCCTGAGTTTGTTGCTGCTATTGATAAGATTATTGCTGCTGCGCGCAAGCATGGCAAGTGGGCTGCT CGCATGGTTAACAATGGTACAGTAGCCAAGGAGGCTCGGGAGCGTTACGATACCGTCGCCATTACTGGTGACACC AAGGCGATTCAGAACTGGTACATGGCAGAGTTTGAGATTGCCCGTTCATGA |