Protein ID | Pro_DTO377G3_2|g5555.t1 |
Gene name | |
Location | scaffold_13:427190..430198 |
Strand | - |
Gene length (bp) | 3008 |
Transcript length (bp) | 2823 |
Coding sequence length (bp) | 2823 |
Protein length (aa) | 941 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00176 | SNF2-rel_dom | SNF2-related domain | 1.1E-70 | 327 | 655 |
PF08797 | HIRAN | HIRAN domain | 2.2E-17 | 104 | 188 |
PF00271 | Helicase_C | Helicase conserved C-terminal domain | 3.5E-15 | 770 | 883 |
PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 2.7E-10 | 696 | 742 |
PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 7.5E-10 | 699 | 736 |
PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 5.5E-09 | 699 | 736 |
PF13639 | zf-RING_2 | Ring finger domain | 7.2E-08 | 699 | 737 |
PF13445 | zf-RING_UBOX | RING-type zinc-finger | 6.3E-06 | 699 | 734 |
GO Term | Description | Terminal node |
---|---|---|
GO:0140658 | ATP-dependent chromatin remodeler activity | Yes |
GO:0008270 | zinc ion binding | Yes |
GO:0003676 | nucleic acid binding | Yes |
GO:0005524 | ATP binding | Yes |
GO:0046872 | metal ion binding | Yes |
GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Yes |
GO:0008094 | ATP-dependent activity, acting on DNA | No |
GO:0000166 | nucleotide binding | No |
GO:0030554 | adenyl nucleotide binding | No |
GO:0140657 | ATP-dependent activity | No |
GO:0097367 | carbohydrate derivative binding | No |
GO:0017076 | purine nucleotide binding | No |
GO:0046914 | transition metal ion binding | No |
GO:0043167 | ion binding | No |
GO:0032559 | adenyl ribonucleotide binding | No |
GO:0035639 | purine ribonucleoside triphosphate binding | No |
GO:0032553 | ribonucleotide binding | No |
GO:0005488 | binding | No |
GO:0003824 | catalytic activity | No |
GO:0036094 | small molecule binding | No |
GO:0003674 | molecular_function | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0032555 | purine ribonucleotide binding | No |
GO:0016787 | hydrolase activity | No |
GO:0043169 | cation binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0043168 | anion binding | No |
GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
GO:0140097 | catalytic activity, acting on DNA | No |
GO:0140640 | catalytic activity, acting on a nucleic acid | No |
GO:1901265 | nucleoside phosphate binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 19 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5555.t1 MVVKRKAPGSTGDAGRAPKIIRTAPTLNTEKASPGQRFGETVDYIPLDQDTSSGQRFGESADFIPLNQLSQVVGA DEEDEEALDVLQGSQEVDETSLTSSILYGIVSTKIVGVRFYRGRASPGERVIIIRDSNNQYDSNAIKVTNVMGAQ IGHIPRQMAAKLASYMDARDLIIEGTLTGAIGDYTCPVDLKLFGTCEPTRRTNLKQRMQKDKLPVRQMNELEHEE RKAEKAAEKQQKEAAKKARAMALGKAAKWQANQNPEYANLSIPTGLGGEQSESLEELLNQSSTFNPRDIGQVVET FGQKESDLVNLPMVDTPAGLSTQLLPYQRQGLAWMIKQESPSLPARGSDDIVQLWKRKNNDFLNIATNYATATEP ALASGGILADDMGLGKTIQIISLILSNAKPLTAGSSKTTLIIAPVGVMSNWRNQIQDHAHKETAPSVLIYHGSGK KEAENLAKYDVVITSYGALALDFNPKANKTPAKGIFSVHWRRVVLDEGHTIRNPSSKASLAACGLRADSRWTLTG TPIINTLKDLYAQIRFLKFSGGLEDLGIFNSVLIRPLTAGEPEARLLLEALMGTICLRRRKDMSFINLKLPEMTS RLIRIKFNAHEQEKYHAFQTEAQGALLDFKDKDGKTKYSHLLEVLLRLRQVCNHWALCKNRIDKLMGMLEEHKVV PLTPENVRALQEMLQLQIESQELCAICLDNLEQPVITACAHAYCRGCIEQVIERQHKCPLCRADIKETNTLVSPA AELGEDTDIVEADPDSPSSKIETLVKILTAQGQAPGTKTVVFSQWTSFLNLIEPHLKQRGIKFARVDGKMQSVKR DNSINSFSNDPECTVLLASLSVCSVGLNLVAANQVILCDSWWAPAIEDQAVDRVYRLGQKRETTVWRLVMEDSIE ERVLAIQERKRSLMQAAFRETKKKAEDRGTRVADLESLLQ* |
Coding | >Pro_DTO377G3_2|g5555.t1 ATGGTAGTAAAACGCAAGGCCCCCGGTTCTACCGGAGACGCTGGTCGTGCGCCAAAAATCATCCGCACAGCCCCG ACTTTGAACACCGAAAAAGCCAGCCCAGGCCAACGATTCGGCGAGACTGTCGACTACATTCCGTTGGACCAGGAT ACTAGTTCGGGCCAGAGATTTGGCGAGTCGGCCGACTTCATTCCATTGAATCAGTTGTCGCAAGTAGTTGGCGCC GATGAAGAGGATGAGGAAGCGCTCGATGTGCTTCAAGGGTCCCAGGAAGTGGATGAAACCTCTTTAACAAGCTCA ATCCTCTATGGTATCGTTTCCACAAAGATCGTTGGTGTACGCTTTTACAGGGGTCGTGCCAGCCCAGGTGAACGG GTCATCATAATTCGGGATTCTAATAATCAATACGATAGCAATGCTATTAAGGTTACTAATGTCATGGGCGCCCAA ATCGGCCACATTCCACGACAGATGGCAGCTAAGTTGGCGTCATATATGGATGCTCGTGATCTCATTATTGAAGGC ACGCTGACTGGTGCGATTGGGGATTATACATGCCCTGTTGATTTGAAACTGTTCGGAACTTGCGAGCCTACCAGA CGAACTAATCTGAAGCAACGAATGCAGAAGGACAAGCTTCCTGTGCGCCAAATGAACGAGTTGGAGCACGAGGAG CGCAAGGCAGAGAAAGCAGCCGAGAAACAGCAGAAGGAGGCCGCAAAGAAAGCTCGCGCCATGGCTCTTGGCAAA GCTGCAAAATGGCAAGCCAACCAGAACCCAGAGTATGCGAACCTCTCGATTCCAACGGGACTTGGTGGCGAGCAA AGTGAAAGCTTGGAGGAACTCCTTAACCAGAGCTCCACCTTCAATCCCCGAGATATTGGCCAGGTTGTGGAAACT TTCGGACAGAAGGAGTCTGACCTGGTTAATTTGCCGATGGTCGATACTCCAGCCGGCCTTTCCACCCAGTTGCTT CCATATCAGCGCCAAGGACTAGCTTGGATGATCAAGCAAGAATCGCCAAGCCTTCCCGCAAGGGGCTCTGATGAT ATCGTGCAATTGTGGAAGCGGAAAAATAATGACTTTCTCAATATCGCAACAAATTATGCCACAGCCACGGAGCCA GCCCTCGCCAGTGGTGGTATTCTTGCTGATGACATGGGCTTGGGCAAGACAATCCAGATCATCTCATTGATTCTT TCAAATGCAAAGCCTCTCACTGCAGGCTCCTCTAAGACCACTTTGATCATTGCCCCTGTCGGTGTTATGAGCAAC TGGAGAAATCAGATCCAAGACCACGCCCATAAGGAGACCGCCCCGAGTGTCTTGATCTATCACGGCTCTGGGAAG AAGGAAGCTGAAAACTTGGCCAAGTATGATGTTGTAATCACTAGCTATGGAGCCCTGGCCCTGGACTTCAACCCG AAAGCAAATAAGACGCCAGCTAAGGGCATCTTTTCGGTGCACTGGCGTCGTGTCGTACTTGACGAAGGCCATACC ATCCGCAATCCCAGTTCCAAAGCCTCCCTTGCGGCTTGTGGCTTACGTGCCGACTCCCGCTGGACCCTGACCGGA ACCCCCATTATCAACACTCTGAAGGATTTGTATGCGCAAATACGTTTCCTTAAGTTTTCCGGTGGATTGGAAGAT TTGGGGATCTTCAACAGTGTCTTGATTCGACCCTTAACTGCAGGAGAGCCCGAGGCTCGACTGCTGCTTGAGGCT CTCATGGGCACCATCTGCTTACGACGTAGGAAGGATATGAGCTTTATCAATTTGAAGCTACCCGAGATGACGTCT CGTCTCATTAGAATCAAGTTCAATGCTCATGAACAGGAAAAGTACCATGCTTTCCAAACCGAGGCCCAGGGTGCT CTTCTCGACTTCAAGGACAAAGATGGCAAGACTAAATACTCTCATCTTCTCGAGGTTCTTCTCCGACTTCGTCAA GTCTGCAATCACTGGGCGCTCTGCAAAAACCGCATCGACAAACTCATGGGCATGTTGGAGGAACACAAAGTCGTG CCTCTGACACCCGAGAACGTCCGTGCTCTACAAGAGATGCTGCAGCTCCAGATAGAAAGCCAAGAACTGTGTGCC ATCTGCCTCGACAACCTAGAGCAACCCGTCATAACCGCCTGCGCCCACGCCTATTGCCGGGGCTGCATCGAGCAG GTTATCGAACGCCAACACAAGTGTCCGCTCTGCCGCGCAGATATCAAGGAAACCAACACACTCGTCTCCCCAGCT GCGGAACTGGGTGAAGACACTGACATCGTTGAGGCCGACCCCGACAGTCCAAGCAGCAAGATTGAGACCCTAGTC AAGATCCTGACTGCTCAGGGCCAGGCACCAGGAACAAAGACCGTAGTCTTCAGCCAATGGACATCATTCCTAAAT CTCATCGAGCCACACCTTAAGCAGCGCGGGATCAAGTTCGCCCGCGTAGATGGCAAGATGCAGTCTGTGAAACGC GACAACTCCATTAACTCATTCTCCAACGACCCCGAGTGTACTGTCCTCCTCGCAAGTCTGAGCGTGTGCAGTGTT GGTCTCAACCTCGTTGCAGCAAACCAGGTCATCTTGTGTGACAGTTGGTGGGCGCCTGCTATCGAGGATCAAGCC GTCGATCGGGTGTATCGGCTTGGGCAGAAGCGGGAGACGACAGTCTGGAGACTGGTCATGGAAGATAGTATTGAG GAGCGGGTGTTGGCGATCCAGGAGCGTAAGAGGAGTCTAATGCAGGCTGCTTTCCGAGAGACGAAAAAGAAGGCC GAGGATAGAGGTACTCGTGTTGCAGATCTTGAGTCTCTTCTGCAATAG |
Transcript | >Pro_DTO377G3_2|g5555.t1 ATGGTAGTAAAACGCAAGGCCCCCGGTTCTACCGGAGACGCTGGTCGTGCGCCAAAAATCATCCGCACAGCCCCG ACTTTGAACACCGAAAAAGCCAGCCCAGGCCAACGATTCGGCGAGACTGTCGACTACATTCCGTTGGACCAGGAT ACTAGTTCGGGCCAGAGATTTGGCGAGTCGGCCGACTTCATTCCATTGAATCAGTTGTCGCAAGTAGTTGGCGCC GATGAAGAGGATGAGGAAGCGCTCGATGTGCTTCAAGGGTCCCAGGAAGTGGATGAAACCTCTTTAACAAGCTCA ATCCTCTATGGTATCGTTTCCACAAAGATCGTTGGTGTACGCTTTTACAGGGGTCGTGCCAGCCCAGGTGAACGG GTCATCATAATTCGGGATTCTAATAATCAATACGATAGCAATGCTATTAAGGTTACTAATGTCATGGGCGCCCAA ATCGGCCACATTCCACGACAGATGGCAGCTAAGTTGGCGTCATATATGGATGCTCGTGATCTCATTATTGAAGGC ACGCTGACTGGTGCGATTGGGGATTATACATGCCCTGTTGATTTGAAACTGTTCGGAACTTGCGAGCCTACCAGA CGAACTAATCTGAAGCAACGAATGCAGAAGGACAAGCTTCCTGTGCGCCAAATGAACGAGTTGGAGCACGAGGAG CGCAAGGCAGAGAAAGCAGCCGAGAAACAGCAGAAGGAGGCCGCAAAGAAAGCTCGCGCCATGGCTCTTGGCAAA GCTGCAAAATGGCAAGCCAACCAGAACCCAGAGTATGCGAACCTCTCGATTCCAACGGGACTTGGTGGCGAGCAA AGTGAAAGCTTGGAGGAACTCCTTAACCAGAGCTCCACCTTCAATCCCCGAGATATTGGCCAGGTTGTGGAAACT TTCGGACAGAAGGAGTCTGACCTGGTTAATTTGCCGATGGTCGATACTCCAGCCGGCCTTTCCACCCAGTTGCTT CCATATCAGCGCCAAGGACTAGCTTGGATGATCAAGCAAGAATCGCCAAGCCTTCCCGCAAGGGGCTCTGATGAT ATCGTGCAATTGTGGAAGCGGAAAAATAATGACTTTCTCAATATCGCAACAAATTATGCCACAGCCACGGAGCCA GCCCTCGCCAGTGGTGGTATTCTTGCTGATGACATGGGCTTGGGCAAGACAATCCAGATCATCTCATTGATTCTT TCAAATGCAAAGCCTCTCACTGCAGGCTCCTCTAAGACCACTTTGATCATTGCCCCTGTCGGTGTTATGAGCAAC TGGAGAAATCAGATCCAAGACCACGCCCATAAGGAGACCGCCCCGAGTGTCTTGATCTATCACGGCTCTGGGAAG AAGGAAGCTGAAAACTTGGCCAAGTATGATGTTGTAATCACTAGCTATGGAGCCCTGGCCCTGGACTTCAACCCG AAAGCAAATAAGACGCCAGCTAAGGGCATCTTTTCGGTGCACTGGCGTCGTGTCGTACTTGACGAAGGCCATACC ATCCGCAATCCCAGTTCCAAAGCCTCCCTTGCGGCTTGTGGCTTACGTGCCGACTCCCGCTGGACCCTGACCGGA ACCCCCATTATCAACACTCTGAAGGATTTGTATGCGCAAATACGTTTCCTTAAGTTTTCCGGTGGATTGGAAGAT TTGGGGATCTTCAACAGTGTCTTGATTCGACCCTTAACTGCAGGAGAGCCCGAGGCTCGACTGCTGCTTGAGGCT CTCATGGGCACCATCTGCTTACGACGTAGGAAGGATATGAGCTTTATCAATTTGAAGCTACCCGAGATGACGTCT CGTCTCATTAGAATCAAGTTCAATGCTCATGAACAGGAAAAGTACCATGCTTTCCAAACCGAGGCCCAGGGTGCT CTTCTCGACTTCAAGGACAAAGATGGCAAGACTAAATACTCTCATCTTCTCGAGGTTCTTCTCCGACTTCGTCAA GTCTGCAATCACTGGGCGCTCTGCAAAAACCGCATCGACAAACTCATGGGCATGTTGGAGGAACACAAAGTCGTG CCTCTGACACCCGAGAACGTCCGTGCTCTACAAGAGATGCTGCAGCTCCAGATAGAAAGCCAAGAACTGTGTGCC ATCTGCCTCGACAACCTAGAGCAACCCGTCATAACCGCCTGCGCCCACGCCTATTGCCGGGGCTGCATCGAGCAG GTTATCGAACGCCAACACAAGTGTCCGCTCTGCCGCGCAGATATCAAGGAAACCAACACACTCGTCTCCCCAGCT GCGGAACTGGGTGAAGACACTGACATCGTTGAGGCCGACCCCGACAGTCCAAGCAGCAAGATTGAGACCCTAGTC AAGATCCTGACTGCTCAGGGCCAGGCACCAGGAACAAAGACCGTAGTCTTCAGCCAATGGACATCATTCCTAAAT CTCATCGAGCCACACCTTAAGCAGCGCGGGATCAAGTTCGCCCGCGTAGATGGCAAGATGCAGTCTGTGAAACGC GACAACTCCATTAACTCATTCTCCAACGACCCCGAGTGTACTGTCCTCCTCGCAAGTCTGAGCGTGTGCAGTGTT GGTCTCAACCTCGTTGCAGCAAACCAGGTCATCTTGTGTGACAGTTGGTGGGCGCCTGCTATCGAGGATCAAGCC GTCGATCGGGTGTATCGGCTTGGGCAGAAGCGGGAGACGACAGTCTGGAGACTGGTCATGGAAGATAGTATTGAG GAGCGGGTGTTGGCGATCCAGGAGCGTAAGAGGAGTCTAATGCAGGCTGCTTTCCGAGAGACGAAAAAGAAGGCC GAGGATAGAGGTACTCGTGTTGCAGATCTTGAGTCTCTTCTGCAATAG |
Gene | >Pro_DTO377G3_2|g5555.t1 ATGGTAGTAAAACGCAAGGCCCCCGGTTCTACCGGAGACGCTGGTCGTGCGCCAAAAATCATCCGCACAGCCCCG ACTTTGAACACCGAAAAAGCCAGCCCAGGCCAACGATTCGGCGAGACTGTCGACTACATTCCGTTGGACCAGGAT ACTAGTTCGGGCCAGAGATTTGGCGAGTCGGCCGACTTCATTCCATTGAATCAGTTGTCGCAAGTAGTTGGCGCC GATGAAGAGGATGAGGAAGCGCTCGATGTGCTTCAAGGGTCCCAGGAAGTGGATGAAACCTCTTTAACAAGCTCA ATCCTCTATGGTATGCTCCTTTCCACATAATCTCGGTCCCTCGTGTACGGATGATCTAGAAACCATACTAAACAG CACCCAATAGGTATCGTTTCCACAAAGATCGTTGGTGTACGCTTTTACAGGGGTCGTGCCAGCCCAGGTGAACGG GTCATCATAATTCGGGATTCTAATAATCAATACGATAGCAATGCTATTAAGGTTACTAATGTCATGGGCGCCCAA ATCGGCCACATTCCACGACAGATGGCAGCTAAGTTGGCGTCATATATGGTAAGAATCTCCAATCATATTGCTTCC GATATTTTGCTAACGTTCGTCATCAAAGGATGCTCGTGATCTCATTATTGAAGGCACGCTGACTGGTGCGATTGG GGATTATACATGCCCTGTTGATTTGAAACTGTTCGGAACTTGCGAGCCTACCAGACGAACTAATCTGAAGCAACG AATGCAGAAGGACAAGCTTCCTGTGCGCCAAATGAACGAGTTGGAGCACGAGGAGCGCAAGGCAGAGAAAGCAGC CGAGAAACAGCAGAAGGAGGCCGCAAAGAAAGCTCGCGCCATGGCTCTTGGCAAAGCTGCAAAATGGCAAGCCAA CCAGAACCCAGAGTATGCGAACCTCTCGATTCCAACGGGACTTGGTGGCGAGCAAAGTGAAAGCTTGGAGGAACT CCTTAACCAGAGCTCCACCTTCAATCCCCGAGATATTGGCCAGGTTGTGGAAACTTTCGGACAGAAGGAGTCTGA CCTGGTTAATTTGCCGATGGTCGATACTCCAGCCGGCCTTTCCACCCAGTTGCTTCCATATCAGCGCCAAGGACT AGCTTGGATGATCAAGCAAGAATCGCCAAGCCTTCCCGCAAGGGGCTCTGATGATATCGTGCAATTGTGGAAGCG GAAAAATAATGACTTTCTCAATATCGCAACAAATTATGCCACAGCCACGGAGCCAGCCCTCGCCAGTGGTGGTAT TCTTGCTGATGACATGGGCTTGGGCAAGACAATCCAGATCATCTCATTGATTCTTTCAAATGCAAAGCCTCTCAC TGCAGGCTCCTCTAAGACCACTTTGATCATTGCCCCTGTCGGTGTTATGAGCAACTGGAGAAATCAGATCCAAGA CCACGCCCATAAGGAGACCGCCCCGAGTGTCTTGATCTATCACGGCTCTGGGAAGAAGGAAGCTGAAAACTTGGC CAAGTATGATGTTGTAATCACTAGCTATGGAGCCCTGGCCCTGGACTTCAACCCGAAAGCAAATAAGACGCCAGC TAAGGGCATCTTTTCGGTGCACTGGCGTCGTGTCGTACTTGACGAAGGCCATACCATCCGCAATCCCAGTTCCAA AGCCTCCCTTGCGGCTTGTGGCTTACGTGCCGACTCCCGCTGGACCCTGACCGGAACCCCCATTATCAACACTCT GAAGGATTTGTATGCGCAAATACGTTTCCTTAAGTTTTCCGGTGGATTGGAAGATTTGGGGATCTTCAACAGTGT CTTGATTCGACCCTTAACTGCAGGAGAGCCCGAGGCTCGACTGCTGCTTGAGGCTCTCATGGGCACCATCTGCTT ACGACGTAGGAAGGATATGAGCTTTATCAATTTGAAGCTACCCGAGATGACGTCTCGTCTCATTAGAATCAAGTT CAATGCTCATGAACAGGAAAAGTACCATGCTTTCCAGTATGTATCGAGTGACTACCCACAGTGAAAACAAATTTG CTAATAACAATCATAGAACCGAGGCCCAGGGTGCTCTTCTCGACTTCAAGGACAAAGATGGCAAGACTAAATACT CTCATCTTCTCGAGGTTCTTCTCCGACTTCGTCAAGTCTGCAATCACTGGGCGCTCTGCAAAAACCGCATCGACA AACTCATGGGCATGTTGGAGGAACACAAAGTCGTGCCTCTGACACCCGAGAACGTCCGTGCTCTACAAGAGATGC TGCAGCTCCAGATAGAAAGCCAAGAACTGTGTGCCATCTGCCTCGACAACCTAGAGCAACCCGTCATAACCGCCT GCGCCCACGCCTATTGCCGGGGCTGCATCGAGCAGGTTATCGAACGCCAACACAAGTGTCCGCTCTGCCGCGCAG ATATCAAGGAAACCAACACACTCGTCTCCCCAGCTGCGGAACTGGGTGAAGACACTGACATCGTTGAGGCCGACC CCGACAGTCCAAGCAGCAAGATTGAGACCCTAGTCAAGATCCTGACTGCTCAGGGCCAGGCACCAGGAACAAAGA CCGTAGTCTTCAGCCAATGGACATCATTCCTAAATCTCATCGAGCCACACCTTAAGCAGCGCGGGATCAAGTTCG CCCGCGTAGATGGCAAGATGCAGTCTGTGAAACGCGACAACTCCATTAACTCATTCTCCAACGACCCCGAGTGTA CTGTCCTCCTCGCAAGTCTGAGCGTGTGCAGTGTTGGTCTCAACCTCGTTGCAGCAAACCAGGTCATCTTGTGTG ACAGTTGGTGGGCGCCTGCTATCGAGGATCAAGCCGTCGATCGGGTGTATCGGCTTGGGCAGAAGCGGGAGACGA CAGTCTGGAGACTGGTCATGGAAGATAGTATTGAGGAGCGGGTGTTGGCGATCCAGGAGCGTAAGAGGAGTCTAA TGCAGGCTGCTTTCCGAGAGACGAAAAAGAAGGCCGAGGATAGAGGTACTCGTGTTGCAGATCTTGAGTCTCTTC TGCAATAG |