© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5541.t1 |
| Gene name | |
| Location | scaffold_13:389303..390955 |
| Strand | + |
| Gene length (bp) | 1652 |
| Transcript length (bp) | 1209 |
| Coding sequence length (bp) | 1209 |
| Protein length (aa) | 403 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16131 | Torus | Torus domain | 5.9E-39 | 56 | 161 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-07 | 200 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 68.93 | 41.41 | 96.46 |
| 5d_25C | Five days - 25 degrees Celsius | 75.87 | 45.97 | 105.76 |
| 7d_25C | Seven days - 25 degrees Celsius | 76.35 | 46.32 | 106.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 88.51 | 53.92 | 123.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 67.29 | 40.21 | 94.38 |
| 7d_30C | Seven days - 30 degrees Celsius | 64.43 | 38.41 | 90.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.744380 | no |
| 3d_25C | 7d_25C | 0.723859 | no |
| 3d_25C | 7d_15C | 0.944740 | no |
| 3d_25C | 7d_30C | 0.830856 | no |
| 3d_25C | 10d_25C | 0.300764 | no |
| 5d_25C | 7d_25C | 0.985937 | no |
| 5d_25C | 7d_15C | 0.670644 | no |
| 5d_25C | 7d_30C | 0.533374 | no |
| 5d_25C | 10d_25C | 0.559367 | no |
| 7d_25C | 7d_15C | 0.649850 | no |
| 7d_25C | 7d_30C | 0.512545 | no |
| 7d_25C | 10d_25C | 0.578667 | no |
| 7d_15C | 7d_30C | 0.896739 | no |
| 7d_15C | 10d_25C | 0.241986 | no |
| 7d_30C | 10d_25C | 0.157056 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5541.t1 MADTSVAEPPAPISTTPETLEVNAEQTIVATTGADETVQGEQQLQSVKKTKIIRRKKRPARIQVDASTIKAEPAQ QPGLDYNIWYNKSGDNDDKYGLSQPAPSRCNIARDSGYTRADRIPGSFFCIHFARGVCVKGQDCEYLHRLPTIHD MFNPNMDCFGRDKHSDYKEDMSGVGSFTRQNRTIYVGRITVSDDIEEVCSRHFAEWGQIERTRVLTGRGVAFVTY SSESNAQFALAAMQNQSLDHEEILNVRWATVDPNPMAQKREARRLEEQAAEAVRRALPAAFVAEIEGRDPEAKRR KKIEGTFGLQGYDVPDDVWHARTRQLEDASRAAQLEAPQQPMMIESASVSVQEQEQQPQSNGIFSSSALAALRGL NGGTVTTQAPKAVGGPLVGYGSDDESD* |
| Coding | >Pro_DTO377G3_2|g5541.t1 ATGGCAGATACATCGGTTGCTGAGCCACCAGCTCCCATTTCCACCACCCCCGAAACCCTTGAAGTCAATGCCGAA CAGACAATTGTGGCAACAACCGGCGCGGACGAGACTGTGCAAGGAGAGCAGCAGCTTCAGTCGGTCAAGAAGACC AAGATTATTCGCAGGAAGAAACGCCCAGCGAGGATACAAGTCGACGCGTCAACCATCAAAGCTGAGCCTGCACAG CAGCCGGGACTCGACTATAATATTTGGTACAACAAGAGCGGCGACAACGACGACAAATATGGCCTCAGCCAGCCT GCGCCTAGTCGCTGCAATATTGCGCGTGACTCGGGATACACTCGCGCTGATCGCATTCCGGGCTCCTTTTTCTGC ATACATTTTGCGCGAGGCGTCTGCGTGAAAGGTCAGGACTGTGAATACCTCCATCGTCTACCGACGATTCACGAT ATGTTCAATCCAAACATGGACTGCTTTGGGAGAGACAAGCACAGCGATTACAAGGAAGATATGTCCGGAGTAGGC TCGTTCACACGCCAAAATAGGACAATCTACGTGGGTCGGATTACGGTTTCCGATGATATCGAGGAAGTGTGCTCA AGGCATTTTGCGGAATGGGGTCAAATTGAAAGAACCAGAGTACTTACCGGACGGGGCGTGGCTTTCGTGACCTAT TCGTCAGAAAGTAATGCGCAGTTTGCTCTAGCTGCGATGCAAAACCAAAGCTTGGATCATGAAGAAATTCTTAAC GTACGATGGGCAACGGTCGACCCGAACCCAATGGCACAGAAGCGCGAGGCACGCCGGTTAGAAGAGCAAGCCGCC GAGGCTGTGCGCCGGGCACTACCCGCAGCTTTTGTAGCAGAGATCGAAGGCCGAGATCCCGAAGCCAAGAGGCGG AAGAAGATCGAGGGAACTTTTGGACTACAGGGCTATGACGTTCCAGATGATGTGTGGCATGCTAGAACCCGTCAA TTGGAGGATGCGAGCCGGGCCGCTCAGCTAGAGGCACCCCAACAACCGATGATGATCGAGTCTGCTTCGGTTTCG GTACAGGAGCAGGAGCAGCAGCCTCAGAGTAATGGCATCTTCTCCAGCTCAGCTCTCGCAGCCCTACGGGGTCTT AATGGCGGAACGGTGACGACCCAGGCACCCAAGGCTGTTGGTGGACCGTTAGTCGGCTACGGCAGCGACGATGAG AGTGACTGA |
| Transcript | >Pro_DTO377G3_2|g5541.t1 ATGGCAGATACATCGGTTGCTGAGCCACCAGCTCCCATTTCCACCACCCCCGAAACCCTTGAAGTCAATGCCGAA CAGACAATTGTGGCAACAACCGGCGCGGACGAGACTGTGCAAGGAGAGCAGCAGCTTCAGTCGGTCAAGAAGACC AAGATTATTCGCAGGAAGAAACGCCCAGCGAGGATACAAGTCGACGCGTCAACCATCAAAGCTGAGCCTGCACAG CAGCCGGGACTCGACTATAATATTTGGTACAACAAGAGCGGCGACAACGACGACAAATATGGCCTCAGCCAGCCT GCGCCTAGTCGCTGCAATATTGCGCGTGACTCGGGATACACTCGCGCTGATCGCATTCCGGGCTCCTTTTTCTGC ATACATTTTGCGCGAGGCGTCTGCGTGAAAGGTCAGGACTGTGAATACCTCCATCGTCTACCGACGATTCACGAT ATGTTCAATCCAAACATGGACTGCTTTGGGAGAGACAAGCACAGCGATTACAAGGAAGATATGTCCGGAGTAGGC TCGTTCACACGCCAAAATAGGACAATCTACGTGGGTCGGATTACGGTTTCCGATGATATCGAGGAAGTGTGCTCA AGGCATTTTGCGGAATGGGGTCAAATTGAAAGAACCAGAGTACTTACCGGACGGGGCGTGGCTTTCGTGACCTAT TCGTCAGAAAGTAATGCGCAGTTTGCTCTAGCTGCGATGCAAAACCAAAGCTTGGATCATGAAGAAATTCTTAAC GTACGATGGGCAACGGTCGACCCGAACCCAATGGCACAGAAGCGCGAGGCACGCCGGTTAGAAGAGCAAGCCGCC GAGGCTGTGCGCCGGGCACTACCCGCAGCTTTTGTAGCAGAGATCGAAGGCCGAGATCCCGAAGCCAAGAGGCGG AAGAAGATCGAGGGAACTTTTGGACTACAGGGCTATGACGTTCCAGATGATGTGTGGCATGCTAGAACCCGTCAA TTGGAGGATGCGAGCCGGGCCGCTCAGCTAGAGGCACCCCAACAACCGATGATGATCGAGTCTGCTTCGGTTTCG GTACAGGAGCAGGAGCAGCAGCCTCAGAGTAATGGCATCTTCTCCAGCTCAGCTCTCGCAGCCCTACGGGGTCTT AATGGCGGAACGGTGACGACCCAGGCACCCAAGGCTGTTGGTGGACCGTTAGTCGGCTACGGCAGCGACGATGAG AGTGACTGA |
| Gene | >Pro_DTO377G3_2|g5541.t1 ATGGCAGATACATCGGTTGCTGAGCCACCAGCTCCCATTTCCACCACCCCCGAAACCCTTGAAGTCAATGCCGAA CAGACAATTGTGGCAACAACCGGCGCGGACGAGACTGTGCAAGGAGAGCAGCAGCTTCAGTCGGTCAAGAAGACC AAGATTATTCGCAGGAAGAAACGCCCAGCGAGGATACAAGTCGACGCGTCAACCATCAAAGCTGAGCCTGCACAG CAGCCGGGACTCGACTATAATATTTGGTACAACAAGAGCGGCGACAACGACGACAAATATGGCCTCAGCCAGCCT GCGCCTAGTCGCTGCAATATTGCGCGTGACTCGGGATACACTCGCGCTGATCGCATTCCGGGCTCCTTTTTCTGG TAGGAAATTTTACCATTGCGCATCGCGGTAGACATTTGCTAATCCTTTTTCCGTCCTATCTAGCATACATTTTGC GCGAGGCGTCTGCGTGAAAGGTCAGGACTGTGAATACCTCCATCGTCTACCGACGATTCACGATATGTTAGTGAT TCCCATGCCGTACGCGATTCGAGGATTCTTCTACTCTGTTGGACTCGTCGGATACAAAAGAACCTGGCTAATCAA TGATTCTTAGGTTCAATCCAAACATGGACTGCTTTGGTTAGTCTCCTTGCTATTTGATTTTAAAACAGGCGACTG ACTCCAGACTATAGGGAGAGACAAGCACAGCGATTACAAGGAAGTGAGTATCTCTTTGTGACTAGGAGATGTTGC TTCGCTATGAACATATCGCTAACGCTACTTGAAATAGGATATGTCCGGAGTAGGCTCGTTCACACGCCAAAATAG GACAATCTACGTGGGTCGGATTACGGTTTCGTGAGTACCTCGAAAGGCTATACTTCGTATTGTTGCTAATCAACA TCTAGCGATGATATCGAGGAAGTGTGCTCAAGGCATTTTGCGGAATGGGGTCAAATTGAAAGAACCAGAGTACTT ACCGGACGGGGCGTGGCTTTCGTGACCTATTCGTCAGAAAGTAATGCGCAGTTTGCGTAAGATACCCCTTCCCAA GCTCTCTATTTGTACCGAACTAACATATGACTAAAGTCTAGCTGCGATGCAAAACCAAAGCTTGGATCATGAAGT GAGTTCAACATTTCAATCCACAAGATGTGTTATACAAAGGTACTAACAACAAGTAGGAAATTCTTAACGTACGAT GGGCAACGGTCGACCCGAACCCAATGGCACAGAAGCGCGAGGCACGCCGGTTAGAAGAGCAAGCCGCCGAGGCTG TGCGCCGGGCACTACCCGCAGCTTTTGTAGCAGAGATCGAAGGCCGAGATCCCGAAGCCAAGAGGCGGAAGAAGA TCGAGGGAACTTTTGGACTACAGGGCTATGACGTTCCAGATGATGTGTGGCATGCTAGAACCCGTCAATTGGAGG ATGCGAGCCGGGCCGCTCAGCTAGAGGCACCCCAACAACCGATGATGATCGAGTCTGCTTCGGTTTCGGTACAGG AGCAGGAGCAGCAGCCTCAGAGTAATGGCATCTTCTCCAGCTCAGCTCTCGCAGCCCTACGGGGTCTTAATGGCG GAACGGTGACGACCCAGGCACCCAAGGCTGTTGGTGGACCGTTAGTCGGCTACGGCAGCGACGATGAGAGTGACT GA |