Fungal Genomics

at Utrecht University

General Properties

Protein ID	Pro_DTO377G3_2\|g5539.t1
Gene name
Location	scaffold_13:385895..387263
Strand	+
Gene length (bp)	1368
Transcript length (bp)	1368
Coding sequence length (bp)	1368
Protein length (aa)	456

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00117	GATase	Glutamine amidotransferase class-I	1.1E-45	221	396
PF00988	CPSase_sm_chain	Carbamoyl-phosphate synthase small chain, CPSase domain	1.4E-44	44	176

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 16	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Pro_DTO377G3_2\|g5539.t1 MISNLFKAMPARASAFASMSRTSGQARFMATVRRAAMEPATFTIRDGPMFSGKSFGARSNISGEAVFTTSLVGYP ESLTDPSYRGQILVFTQPLIGNYGVPSAEKDPNGLLKYFESPNLQAAGVVVADVAEQYSHWTAVQSLGEWCAREG VPAISGVDTRAIVTYLREQGSSLARITVGEEYDANEDEAFTDPEQIHLVRQVSTKQPFHVAAADPHSHVAVIDCG VKENILRSLVGRGSSVTVLPFDYPIHKVAHHFDGVFISNGPGDPTHCQDTVYHLKRLMETSQVPIFGICLGHQLL ALAAGASTIKLKYGNRAHNIPALDLSTGRCHITSQNHGYAVDASTLPSDWKPYFINLNDQSNEGMIHKSRPIFST QFHPEAKGGPLDSSYLFDIYLDSVLKYKNSQTGLYPQRDSRPSPLLVDLLAKERVGVQPTIGQQNVVAAAAASAA IAAAA*
Coding	>Pro_DTO377G3_2\|g5539.t1 ATGATCTCCAACCTCTTCAAGGCAATGCCTGCCCGGGCTTCTGCCTTCGCCTCCATGAGCCGAACCTCTGGTCAG GCCCGCTTCATGGCTACTGTGCGCCGTGCCGCTATGGAGCCTGCTACCTTCACTATCCGTGATGGTCCCATGTTC TCCGGCAAGTCTTTCGGTGCCCGCTCCAACATCTCTGGCGAAGCCGTCTTCACTACATCCCTTGTTGGATACCCC GAGTCCTTGACCGATCCCTCATACCGTGGTCAGATCCTAGTTTTCACCCAGCCTCTGATTGGCAACTACGGAGTT CCCTCCGCCGAGAAGGATCCCAATGGACTTTTGAAATACTTCGAGTCTCCCAATCTCCAGGCAGCTGGTGTTGTT GTTGCCGATGTCGCCGAGCAATACAGTCACTGGACTGCTGTCCAGAGTCTGGGCGAGTGGTGTGCCCGTGAAGGT GTTCCTGCCATCTCCGGTGTCGATACTCGTGCCATTGTCACCTACCTGCGTGAGCAAGGCTCTTCTCTGGCCCGT ATCACCGTCGGCGAAGAATACGACGCCAACGAGGATGAGGCTTTCACTGACCCTGAGCAAATCCACTTGGTGCGC CAGGTCAGCACCAAGCAGCCTTTCCATGTTGCCGCTGCTGATCCCCACTCCCACGTTGCTGTCATCGACTGTGGT GTTAAGGAGAACATTCTCCGCAGCTTGGTCGGTCGTGGCTCCAGCGTCACTGTCCTGCCCTTCGACTACCCCATC CACAAGGTCGCCCACCACTTCGATGGTGTCTTCATCTCCAACGGCCCTGGTGACCCAACCCACTGCCAGGACACC GTCTACCACCTGAAGCGTCTGATGGAGACCTCCCAGGTCCCCATTTTCGGTATCTGCCTGGGCCACCAGCTCCTC GCTCTGGCCGCCGGTGCCAGCACCATCAAGTTGAAGTACGGAAACCGGGCTCACAACATTCCCGCTCTTGACCTT AGCACTGGTCGCTGCCACATCACCAGCCAGAACCACGGTTACGCCGTTGATGCTTCGACTCTACCATCGGACTGG AAGCCGTACTTCATCAACCTGAACGACCAGAGCAACGAAGGCATGATCCACAAGTCTCGTCCCATCTTCAGCACC CAGTTCCACCCCGAGGCCAAGGGCGGTCCTCTTGACTCATCCTACCTCTTCGATATCTACCTGGACTCCGTGCTG AAGTACAAGAACAGCCAGACTGGTCTCTACCCTCAGCGTGACAGCCGCCCCAGCCCTCTGCTGGTCGACCTGCTT GCCAAGGAGCGCGTGGGTGTTCAGCCCACCATTGGCCAGCAGAACGTGGTAGCCGCTGCCGCTGCTTCTGCTGCC ATTGCCGCTGCTGCTTAA
Transcript	>Pro_DTO377G3_2\|g5539.t1 ATGATCTCCAACCTCTTCAAGGCAATGCCTGCCCGGGCTTCTGCCTTCGCCTCCATGAGCCGAACCTCTGGTCAG GCCCGCTTCATGGCTACTGTGCGCCGTGCCGCTATGGAGCCTGCTACCTTCACTATCCGTGATGGTCCCATGTTC TCCGGCAAGTCTTTCGGTGCCCGCTCCAACATCTCTGGCGAAGCCGTCTTCACTACATCCCTTGTTGGATACCCC GAGTCCTTGACCGATCCCTCATACCGTGGTCAGATCCTAGTTTTCACCCAGCCTCTGATTGGCAACTACGGAGTT CCCTCCGCCGAGAAGGATCCCAATGGACTTTTGAAATACTTCGAGTCTCCCAATCTCCAGGCAGCTGGTGTTGTT GTTGCCGATGTCGCCGAGCAATACAGTCACTGGACTGCTGTCCAGAGTCTGGGCGAGTGGTGTGCCCGTGAAGGT GTTCCTGCCATCTCCGGTGTCGATACTCGTGCCATTGTCACCTACCTGCGTGAGCAAGGCTCTTCTCTGGCCCGT ATCACCGTCGGCGAAGAATACGACGCCAACGAGGATGAGGCTTTCACTGACCCTGAGCAAATCCACTTGGTGCGC CAGGTCAGCACCAAGCAGCCTTTCCATGTTGCCGCTGCTGATCCCCACTCCCACGTTGCTGTCATCGACTGTGGT GTTAAGGAGAACATTCTCCGCAGCTTGGTCGGTCGTGGCTCCAGCGTCACTGTCCTGCCCTTCGACTACCCCATC CACAAGGTCGCCCACCACTTCGATGGTGTCTTCATCTCCAACGGCCCTGGTGACCCAACCCACTGCCAGGACACC GTCTACCACCTGAAGCGTCTGATGGAGACCTCCCAGGTCCCCATTTTCGGTATCTGCCTGGGCCACCAGCTCCTC GCTCTGGCCGCCGGTGCCAGCACCATCAAGTTGAAGTACGGAAACCGGGCTCACAACATTCCCGCTCTTGACCTT AGCACTGGTCGCTGCCACATCACCAGCCAGAACCACGGTTACGCCGTTGATGCTTCGACTCTACCATCGGACTGG AAGCCGTACTTCATCAACCTGAACGACCAGAGCAACGAAGGCATGATCCACAAGTCTCGTCCCATCTTCAGCACC CAGTTCCACCCCGAGGCCAAGGGCGGTCCTCTTGACTCATCCTACCTCTTCGATATCTACCTGGACTCCGTGCTG AAGTACAAGAACAGCCAGACTGGTCTCTACCCTCAGCGTGACAGCCGCCCCAGCCCTCTGCTGGTCGACCTGCTT GCCAAGGAGCGCGTGGGTGTTCAGCCCACCATTGGCCAGCAGAACGTGGTAGCCGCTGCCGCTGCTTCTGCTGCC ATTGCCGCTGCTGCTTAA
Gene	>Pro_DTO377G3_2\|g5539.t1 ATGATCTCCAACCTCTTCAAGGCAATGCCTGCCCGGGCTTCTGCCTTCGCCTCCATGAGCCGAACCTCTGGTCAG GCCCGCTTCATGGCTACTGTGCGCCGTGCCGCTATGGAGCCTGCTACCTTCACTATCCGTGATGGTCCCATGTTC TCCGGCAAGTCTTTCGGTGCCCGCTCCAACATCTCTGGCGAAGCCGTCTTCACTACATCCCTTGTTGGATACCCC GAGTCCTTGACCGATCCCTCATACCGTGGTCAGATCCTAGTTTTCACCCAGCCTCTGATTGGCAACTACGGAGTT CCCTCCGCCGAGAAGGATCCCAATGGACTTTTGAAATACTTCGAGTCTCCCAATCTCCAGGCAGCTGGTGTTGTT GTTGCCGATGTCGCCGAGCAATACAGTCACTGGACTGCTGTCCAGAGTCTGGGCGAGTGGTGTGCCCGTGAAGGT GTTCCTGCCATCTCCGGTGTCGATACTCGTGCCATTGTCACCTACCTGCGTGAGCAAGGCTCTTCTCTGGCCCGT ATCACCGTCGGCGAAGAATACGACGCCAACGAGGATGAGGCTTTCACTGACCCTGAGCAAATCCACTTGGTGCGC CAGGTCAGCACCAAGCAGCCTTTCCATGTTGCCGCTGCTGATCCCCACTCCCACGTTGCTGTCATCGACTGTGGT GTTAAGGAGAACATTCTCCGCAGCTTGGTCGGTCGTGGCTCCAGCGTCACTGTCCTGCCCTTCGACTACCCCATC CACAAGGTCGCCCACCACTTCGATGGTGTCTTCATCTCCAACGGCCCTGGTGACCCAACCCACTGCCAGGACACC GTCTACCACCTGAAGCGTCTGATGGAGACCTCCCAGGTCCCCATTTTCGGTATCTGCCTGGGCCACCAGCTCCTC GCTCTGGCCGCCGGTGCCAGCACCATCAAGTTGAAGTACGGAAACCGGGCTCACAACATTCCCGCTCTTGACCTT AGCACTGGTCGCTGCCACATCACCAGCCAGAACCACGGTTACGCCGTTGATGCTTCGACTCTACCATCGGACTGG AAGCCGTACTTCATCAACCTGAACGACCAGAGCAACGAAGGCATGATCCACAAGTCTCGTCCCATCTTCAGCACC CAGTTCCACCCCGAGGCCAAGGGCGGTCCTCTTGACTCATCCTACCTCTTCGATATCTACCTGGACTCCGTGCTG AAGTACAAGAACAGCCAGACTGGTCTCTACCCTCAGCGTGACAGCCGCCCCAGCCCTCTGCTGGTCGACCTGCTT GCCAAGGAGCGCGTGGGTGTTCAGCCCACCATTGGCCAGCAGAACGTGGTAGCCGCTGCCGCTGCTTCTGCTGCC ATTGCCGCTGCTGCTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail