© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5528.t1 |
| Gene name | |
| Location | scaffold_13:358525..360622 |
| Strand | + |
| Gene length (bp) | 2097 |
| Transcript length (bp) | 1929 |
| Coding sequence length (bp) | 1929 |
| Protein length (aa) | 643 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00258 | Flavodoxin_1 | Flavodoxin | 4.4E-31 | 16 | 153 |
| PF00667 | FAD_binding_1 | FAD binding domain | 7.3E-30 | 229 | 450 |
| PF00175 | NAD_binding_1 | Oxidoreductase NAD-binding domain | 6.4E-15 | 482 | 600 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0010181 | FMN binding | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 49.78 | 30.28 | 69.28 |
| 5d_25C | Five days - 25 degrees Celsius | 62.33 | 38.19 | 86.47 |
| 7d_25C | Seven days - 25 degrees Celsius | 55.07 | 33.33 | 76.81 |
| 10d_25C | Ten days - 25 degrees Celsius | 64.71 | 39.34 | 90.07 |
| 7d_15C | Seven days - 15 degrees Celsius | 95.70 | 56.82 | 134.59 |
| 7d_30C | Seven days - 30 degrees Celsius | 42.39 | 25.42 | 59.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.342521 | no |
| 3d_25C | 7d_25C | 0.728653 | no |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.544216 | no |
| 3d_25C | 10d_25C | 0.268934 | no |
| 5d_25C | 7d_25C | 0.654685 | no |
| 5d_25C | 7d_15C | 0.045367 | yes |
| 5d_25C | 7d_30C | 0.072497 | no |
| 5d_25C | 10d_25C | 0.910919 | no |
| 7d_25C | 7d_15C | 0.008469 | yes |
| 7d_25C | 7d_30C | 0.269079 | no |
| 7d_25C | 10d_25C | 0.538055 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.072817 | no |
| 7d_30C | 10d_25C | 0.048261 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5528.t1 MGDTQSLRPLERSVLILYGSETGNAQEVAEELGALTERLRFATHVSELNQCKPESLFSYTLTIFVASTTGQGDLP ANARSFWKSLLLKKLPATFLNGINFTCFGLGDSSYPKFNWAIRKLYKRLLQLGANEIYPTGEADQQHPEGLEGTF LPWMTDFRKHLLDRHPLPDGQHPIPDDVQLPPKWKLQLAVENDSAPIPQAAVANEHQASTDEYPGLYHLDHDSRP IPHTLCATLTENRRATPQKHWQDVRHITLTVPGLVSYVPGDMIAITPKSSSIDVQTLIDLMGWNDQADRPISLVP MGDIPSPPPIPGLDSYPNLTLRALLVDYLDVKGIPRRSFFSTIAHYTNDEMHKERLLEFTNPEYLDELWDYTTRP RRSILEILHEFDSVKIPWQHAISVIPAMRARQFSIASGGKRKQTADGNTQFELLIAIVKYQTVIKRIREGVCTKY LSVLRPGSTLQVQLQPGGLKSSVQQLTAATVLIGPGTGIAPLRSILWEKAALVQAYREQNPDVNPPIGPTILLYG GRNRESDFFFEEEWTELSKLIPLQVITAFSRDQQRKVYVQDTIRENFALFFCVLHDMQGSVYICGSSGRMPQAVR EALIETFQNGGAPLPGQPFTRSQAEGYLISMEQTGRYKQETW* |
| Coding | >Pro_DTO377G3_2|g5528.t1 ATGGGCGACACCCAAAGTCTACGTCCCTTAGAACGGTCTGTGCTCATTCTCTATGGCTCCGAAACGGGCAATGCG CAGGAAGTGGCCGAGGAATTGGGCGCCTTGACTGAGCGACTCCGTTTTGCGACGCATGTATCCGAGTTGAATCAA TGCAAGCCGGAGTCCCTTTTTTCATACACACTCACCATATTTGTGGCCTCGACTACCGGGCAAGGCGATTTGCCG GCCAATGCGCGGTCTTTTTGGAAGTCGCTCTTGTTGAAAAAGCTACCTGCTACCTTCTTGAATGGCATAAATTTC ACTTGTTTTGGGCTGGGGGATAGCTCGTATCCCAAATTCAACTGGGCGATACGCAAGCTCTATAAACGACTATTA CAACTAGGCGCAAATGAGATCTATCCCACAGGCGAGGCAGACCAGCAACATCCAGAAGGACTCGAGGGAACTTTC CTACCATGGATGACGGACTTCCGAAAACATTTGCTAGATAGACATCCTCTCCCTGATGGACAGCACCCGATCCCA GACGATGTGCAGCTCCCACCAAAATGGAAGTTGCAATTAGCGGTGGAAAACGATTCGGCCCCAATACCCCAAGCT GCAGTCGCAAATGAACATCAAGCTTCTACGGATGAATATCCGGGACTATACCATCTGGACCATGACTCCCGACCT ATCCCACATACGCTATGTGCGACATTGACTGAAAATCGGCGCGCGACTCCGCAAAAGCATTGGCAGGATGTGCGC CACATTACCCTGACCGTCCCAGGCCTTGTCTCTTACGTTCCTGGAGACATGATCGCCATCACACCGAAAAGCTCT TCGATTGATGTCCAAACCCTTATTGATTTGATGGGTTGGAACGATCAGGCAGATCGACCAATCTCTCTCGTTCCA ATGGGAGATATTCCATCACCGCCACCCATTCCTGGCCTCGACTCATATCCCAACCTCACTCTTCGCGCTCTCCTC GTAGACTATCTCGACGTCAAGGGAATACCCCGCCGGTCCTTCTTCTCGACGATTGCACATTACACCAACGATGAA ATGCACAAAGAACGGTTACTAGAATTTACAAATCCGGAATATCTCGACGAGCTATGGGATTACACGACACGCCCA CGACGTAGTATACTTGAGATCTTGCATGAGTTCGACAGTGTCAAAATTCCCTGGCAGCACGCAATATCTGTTATC CCGGCCATGCGCGCCCGCCAGTTTAGCATTGCCAGCGGCGGAAAACGCAAGCAGACTGCTGATGGCAATACACAG TTCGAATTACTCATTGCCATTGTCAAATACCAGACAGTAATCAAGAGAATCCGCGAGGGAGTCTGTACCAAGTAT CTTTCCGTGCTCCGGCCAGGGAGCACCCTTCAAGTCCAGCTCCAACCCGGCGGGCTCAAGTCATCAGTTCAGCAA CTAACCGCAGCAACCGTGCTTATTGGACCGGGCACTGGAATTGCACCCCTGCGCTCCATCCTCTGGGAGAAAGCG GCACTTGTGCAGGCTTACCGCGAGCAAAACCCTGACGTCAATCCACCGATCGGCCCGACAATTCTCCTATACGGA GGCCGAAACCGAGAATCCGACTTCTTCTTCGAGGAAGAGTGGACGGAGCTCAGTAAGCTCATCCCGCTGCAGGTG ATTACTGCTTTTTCGCGTGATCAGCAACGCAAGGTCTACGTGCAAGATACCATTCGCGAGAACTTCGCGCTCTTC TTCTGTGTGTTGCATGATATGCAGGGGTCGGTTTACATTTGTGGTTCCTCGGGCCGCATGCCGCAAGCTGTGCGC GAGGCGCTCATCGAAACCTTCCAAAATGGAGGAGCTCCTTTGCCGGGGCAACCTTTCACCCGTTCTCAGGCTGAG GGCTATCTCATTAGCATGGAGCAGACTGGCCGTTACAAACAAGAGACTTGGTGA |
| Transcript | >Pro_DTO377G3_2|g5528.t1 ATGGGCGACACCCAAAGTCTACGTCCCTTAGAACGGTCTGTGCTCATTCTCTATGGCTCCGAAACGGGCAATGCG CAGGAAGTGGCCGAGGAATTGGGCGCCTTGACTGAGCGACTCCGTTTTGCGACGCATGTATCCGAGTTGAATCAA TGCAAGCCGGAGTCCCTTTTTTCATACACACTCACCATATTTGTGGCCTCGACTACCGGGCAAGGCGATTTGCCG GCCAATGCGCGGTCTTTTTGGAAGTCGCTCTTGTTGAAAAAGCTACCTGCTACCTTCTTGAATGGCATAAATTTC ACTTGTTTTGGGCTGGGGGATAGCTCGTATCCCAAATTCAACTGGGCGATACGCAAGCTCTATAAACGACTATTA CAACTAGGCGCAAATGAGATCTATCCCACAGGCGAGGCAGACCAGCAACATCCAGAAGGACTCGAGGGAACTTTC CTACCATGGATGACGGACTTCCGAAAACATTTGCTAGATAGACATCCTCTCCCTGATGGACAGCACCCGATCCCA GACGATGTGCAGCTCCCACCAAAATGGAAGTTGCAATTAGCGGTGGAAAACGATTCGGCCCCAATACCCCAAGCT GCAGTCGCAAATGAACATCAAGCTTCTACGGATGAATATCCGGGACTATACCATCTGGACCATGACTCCCGACCT ATCCCACATACGCTATGTGCGACATTGACTGAAAATCGGCGCGCGACTCCGCAAAAGCATTGGCAGGATGTGCGC CACATTACCCTGACCGTCCCAGGCCTTGTCTCTTACGTTCCTGGAGACATGATCGCCATCACACCGAAAAGCTCT TCGATTGATGTCCAAACCCTTATTGATTTGATGGGTTGGAACGATCAGGCAGATCGACCAATCTCTCTCGTTCCA ATGGGAGATATTCCATCACCGCCACCCATTCCTGGCCTCGACTCATATCCCAACCTCACTCTTCGCGCTCTCCTC GTAGACTATCTCGACGTCAAGGGAATACCCCGCCGGTCCTTCTTCTCGACGATTGCACATTACACCAACGATGAA ATGCACAAAGAACGGTTACTAGAATTTACAAATCCGGAATATCTCGACGAGCTATGGGATTACACGACACGCCCA CGACGTAGTATACTTGAGATCTTGCATGAGTTCGACAGTGTCAAAATTCCCTGGCAGCACGCAATATCTGTTATC CCGGCCATGCGCGCCCGCCAGTTTAGCATTGCCAGCGGCGGAAAACGCAAGCAGACTGCTGATGGCAATACACAG TTCGAATTACTCATTGCCATTGTCAAATACCAGACAGTAATCAAGAGAATCCGCGAGGGAGTCTGTACCAAGTAT CTTTCCGTGCTCCGGCCAGGGAGCACCCTTCAAGTCCAGCTCCAACCCGGCGGGCTCAAGTCATCAGTTCAGCAA CTAACCGCAGCAACCGTGCTTATTGGACCGGGCACTGGAATTGCACCCCTGCGCTCCATCCTCTGGGAGAAAGCG GCACTTGTGCAGGCTTACCGCGAGCAAAACCCTGACGTCAATCCACCGATCGGCCCGACAATTCTCCTATACGGA GGCCGAAACCGAGAATCCGACTTCTTCTTCGAGGAAGAGTGGACGGAGCTCAGTAAGCTCATCCCGCTGCAGGTG ATTACTGCTTTTTCGCGTGATCAGCAACGCAAGGTCTACGTGCAAGATACCATTCGCGAGAACTTCGCGCTCTTC TTCTGTGTGTTGCATGATATGCAGGGGTCGGTTTACATTTGTGGTTCCTCGGGCCGCATGCCGCAAGCTGTGCGC GAGGCGCTCATCGAAACCTTCCAAAATGGAGGAGCTCCTTTGCCGGGGCAACCTTTCACCCGTTCTCAGGCTGAG GGCTATCTCATTAGCATGGAGCAGACTGGCCGTTACAAACAAGAGACTTGGTGA |
| Gene | >Pro_DTO377G3_2|g5528.t1 ATGGGCGACACCCAAAGTCTACGTCCCTTAGAACGGTCTGTGCTCATTCTCTATGGCTCCGAAACGGGCAATGCG CAGGAAGTGGCCGAGGAATTGGGCGCCTTGACTGAGCGACTCCGTTTTGCGACGCATGTATCCGAGTTGAATCAA TGCAAGCCGGTATGCACTTATCCGCAAGACAATGATCCTCTACAGACCTAATACCTCTGAAATTATAGGAGTCCC TTTTTTCATACACACTCACCATATTTGTGGCCTCGACTACCGGGCAAGGCGATTTGCCGGCCAATGCGCGGTCTT TTTGGAAGTCGCTCTTGTTGAAAAAGCTACCTGCTACCTTCTTGAATGGCATAAATTTCACTTGTTTTGGGCTGG GGGATAGCTCGTATCCCAAGTATGGAACCTATACCACAATTGTGGTTTTCAATGGCTGATTGTGATAGATTCAAC TGGGCGATACGCAAGCTCTATAAACGACTATTACAACTAGGCGCAAATGAGATCTATCCCACAGGCGAGGCAGAC CAGCAACATCCAGAAGGGTGAGTACTATCTTGATCTTCACGCTATATGTCCACGACTTACGTGGGTTTGACACAC AGACTCGAGGGAACTTTCCTACCATGGATGACGGACTTCCGAAAACATTTGCTAGATAGACATCCTCTCCCTGAT GGACAGCACCCGATCCCAGACGATGTGCAGCTCCCACCAAAATGGAAGTTGCAATTAGCGGTGGAAAACGATTCG GCCCCAATACCCCAAGCTGCAGTCGCAAATGAACATCAAGCTTCTACGGATGAATATCCGGGACTATACCATCTG GACCATGACTCCCGACCTATCCCACATACGCTATGTGCGACATTGACTGAAAATCGGCGCGCGACTCCGCAAAAG CATTGGCAGGATGTGCGCCACATTACCCTGACCGTCCCAGGCCTTGTCTCTTACGTTCCTGGAGACATGATCGCC ATCACACCGAAAAGCTCTTCGATTGATGTCCAAACCCTTATTGATTTGATGGGTTGGAACGATCAGGCAGATCGA CCAATCTCTCTCGTTCCAATGGGAGATATTCCATCACCGCCACCCATTCCTGGCCTCGACTCATATCCCAACCTC ACTCTTCGCGCTCTCCTCGTAGACTATCTCGACGTCAAGGGAATACCCCGCCGGTCCTTCTTCTCGACGATTGCA CATTACACCAACGATGAAATGCACAAAGAACGGTTACTAGAATTTACAAATCCGGAATATCTCGACGAGCTATGG GATTACACGACACGCCCACGACGTAGTATACTTGAGATCTTGCATGAGTTCGACAGTGTCAAAATTCCCTGGCAG CACGCAATATCTGTTATCCCGGCCATGCGCGCCCGCCAGTTTAGCATTGCCAGCGGCGGAAAACGCAAGCAGACT GCTGATGGCAATACACAGTTCGAATTACTCATTGCCATTGTCAAATACCAGACAGTAATCAAGAGAATCCGCGAG GGAGTCTGTACCAAGTATCTTTCCGTGCTCCGGCCAGGGAGCACCCTTCAAGTCCAGCTCCAACCCGGCGGGCTC AAGTCATCAGTTCAGCAACTAACCGCAGCAACCGTGCTTATTGGACCGGGCACTGGAATTGCACCCCTGCGCTCC ATCCTCTGGGAGAAAGCGGCACTTGTGCAGGCTTACCGCGAGCAAAACCCTGACGTCAATCCACCGATCGGCCCG ACAATTCTCCTATACGGAGGCCGAAACCGAGAATCCGACTTCTTCTTCGAGGAAGAGTGGACGGAGCTCAGTAAG CTCATCCCGCTGCAGGTGATTACTGCTTTTTCGCGTGATCAGCAACGCAAGGTCTACGTGCAAGATACCATTCGC GAGAACTTCGCGCTCTTCTTCTGTGTGTTGCATGATATGCAGGGGTCGGTTTACATTTGTGGTTCCTCGGGCCGC ATGCCGCAAGCTGTGCGCGAGGCGCTCATCGAAACCTTCCAAAATGGAGGAGCTCCTTTGCCGGGGCAACCTTTC ACCCGTTCTCAGGCTGAGGGCTATCTCATTAGCATGGAGCAGACTGGCCGTTACAAACAAGAGACTTGGTGA |