© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5503.t1 |
| Gene name | |
| Location | scaffold_13:290905..292766 |
| Strand | + |
| Gene length (bp) | 1861 |
| Transcript length (bp) | 1635 |
| Coding sequence length (bp) | 1635 |
| Protein length (aa) | 545 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 3.3E-77 | 53 | 517 |
| PF13520 | AA_permease_2 | Amino acid permease | 5.4E-18 | 51 | 478 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 54 | 76 | 22 |
| 2 | 81 | 103 | 22 |
| 3 | 124 | 146 | 22 |
| 4 | 161 | 180 | 19 |
| 5 | 192 | 214 | 22 |
| 6 | 240 | 262 | 22 |
| 7 | 283 | 305 | 22 |
| 8 | 320 | 352 | 32 |
| 9 | 385 | 404 | 19 |
| 10 | 414 | 436 | 22 |
| 11 | 457 | 479 | 22 |
| 12 | 494 | 516 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5503.t1 MFPRRRPGSRSSACELGPISVEPTIPQTIPETHQIEHALGFTDIYGSLTPRQISIITIGSAIGTGLMVGTGRALS MSGPAAIIISYTIVGLAVYLVLSALGEVGSWLPKPYTVADQAVRFCHPALGFSLGWIFWLKYAVVTPNQLTAAAL VVSYWVSAERVNPGIWITVFLSVIVILNFINHRLPSRIEFYVSSFKLVVMLGLMILSTVIALGGGPDQDRKGFRY WSYHGAFGPHHHHHALLEKFYITCSTMSSATFAYIGSERAGMTHFPNVRKATSRAIQNTFYRIMVFHLLAITLLG MIVPQDSVSVAFSSDANHEAAASAFVAALYLAGISVLPDMLNAFILLFVLSIADYDLYLATKAMCDLAVKRRAPA FLSRTTRRGVPIYALAVCSSTATLAYLNVRQDSTVVFGYFVDMVTMLGLLTWISILITHISFVRARKAQGIPDKA LAFRARFGLPGTCLALILCLFISVAIVFDSFSFDSGVRTFDVKSFIASYISIPVYIILMVGYKLAVHSKHVDPKE ADLWTDKIEPEIERGGGPS* |
| Coding | >Pro_DTO377G3_2|g5503.t1 ATGTTTCCGCGACGCCGACCGGGATCTCGATCCTCTGCCTGCGAACTCGGACCCATCAGCGTCGAGCCAACGATA CCACAAACAATCCCAGAAACTCATCAGATTGAACATGCCCTAGGCTTCACCGATATATACGGGTCATTGACACCC CGTCAAATCAGCATCATCACTATTGGATCTGCAATTGGAACGGGCTTGATGGTAGGTACTGGAAGAGCATTGTCT ATGAGCGGCCCGGCAGCTATTATAATCTCCTACACCATCGTCGGACTCGCCGTTTACCTCGTCCTTTCTGCCTTG GGTGAGGTGGGCTCTTGGTTACCAAAACCGTATACCGTTGCAGACCAAGCCGTTCGATTCTGTCATCCTGCACTT GGATTCAGCTTGGGCTGGATATTTTGGCTGAAATATGCTGTTGTCACACCGAATCAGCTCACAGCTGCAGCGCTG GTAGTCTCTTATTGGGTGAGTGCGGAGCGAGTCAACCCCGGTATCTGGATTACGGTTTTCCTTTCTGTCATTGTG ATTCTCAACTTCATCAATCATCGCCTCCCGAGCAGAATTGAGTTCTATGTCTCTTCCTTCAAGCTTGTCGTCATG CTAGGACTCATGATACTTTCCACTGTCATTGCTCTGGGAGGGGGGCCAGATCAAGACCGAAAAGGGTTTCGATAT TGGTCGTACCATGGTGCTTTCGGCCCTCACCACCATCATCACGCGTTGCTAGAGAAGTTCTACATAACCTGCTCG ACGATGTCATCTGCTACGTTTGCGTACATCGGAAGCGAGCGGGCTGGCATGACTCACTTCCCGAACGTTCGTAAA GCTACCTCGAGGGCCATCCAGAATACTTTCTATCGAATCATGGTTTTCCATCTTCTAGCAATCACCCTTCTCGGC ATGATTGTCCCCCAGGACTCGGTGTCTGTGGCATTTTCTAGCGACGCCAATCACGAGGCTGCCGCATCGGCATTC GTTGCTGCTCTGTATCTGGCAGGCATCTCCGTGCTACCGGACATGTTGAATGCATTCATACTGTTATTCGTCCTG TCAATCGCAGACTACGATCTCTATCTGGCGACCAAGGCAATGTGCGACCTCGCAGTGAAGCGCCGGGCTCCTGCT TTCCTATCACGCACTACCCGAAGAGGCGTCCCGATCTACGCTTTGGCGGTATGCTCGTCAACTGCAACATTGGCG TATCTTAACGTCCGCCAAGACTCAACTGTTGTCTTTGGATACTTCGTGGACATGGTCACCATGCTCGGGCTTCTG ACATGGATTTCCATTCTCATCACCCACATATCTTTTGTGCGAGCGCGAAAGGCTCAAGGTATTCCCGACAAAGCT CTAGCCTTTAGAGCTCGCTTCGGTCTGCCTGGAACGTGTTTGGCTCTCATTCTCTGCTTGTTCATCTCTGTCGCC ATTGTCTTTGACTCCTTCAGCTTCGATTCGGGCGTTCGGACATTCGACGTCAAATCTTTTATTGCCTCGTACATC AGTATTCCTGTCTACATCATCTTGATGGTTGGCTACAAGCTCGCTGTTCATAGTAAACACGTTGACCCCAAGGAG GCTGACCTATGGACAGATAAGATTGAGCCGGAGATTGAGAGAGGGGGGGGCCCTAGCTGA |
| Transcript | >Pro_DTO377G3_2|g5503.t1 ATGTTTCCGCGACGCCGACCGGGATCTCGATCCTCTGCCTGCGAACTCGGACCCATCAGCGTCGAGCCAACGATA CCACAAACAATCCCAGAAACTCATCAGATTGAACATGCCCTAGGCTTCACCGATATATACGGGTCATTGACACCC CGTCAAATCAGCATCATCACTATTGGATCTGCAATTGGAACGGGCTTGATGGTAGGTACTGGAAGAGCATTGTCT ATGAGCGGCCCGGCAGCTATTATAATCTCCTACACCATCGTCGGACTCGCCGTTTACCTCGTCCTTTCTGCCTTG GGTGAGGTGGGCTCTTGGTTACCAAAACCGTATACCGTTGCAGACCAAGCCGTTCGATTCTGTCATCCTGCACTT GGATTCAGCTTGGGCTGGATATTTTGGCTGAAATATGCTGTTGTCACACCGAATCAGCTCACAGCTGCAGCGCTG GTAGTCTCTTATTGGGTGAGTGCGGAGCGAGTCAACCCCGGTATCTGGATTACGGTTTTCCTTTCTGTCATTGTG ATTCTCAACTTCATCAATCATCGCCTCCCGAGCAGAATTGAGTTCTATGTCTCTTCCTTCAAGCTTGTCGTCATG CTAGGACTCATGATACTTTCCACTGTCATTGCTCTGGGAGGGGGGCCAGATCAAGACCGAAAAGGGTTTCGATAT TGGTCGTACCATGGTGCTTTCGGCCCTCACCACCATCATCACGCGTTGCTAGAGAAGTTCTACATAACCTGCTCG ACGATGTCATCTGCTACGTTTGCGTACATCGGAAGCGAGCGGGCTGGCATGACTCACTTCCCGAACGTTCGTAAA GCTACCTCGAGGGCCATCCAGAATACTTTCTATCGAATCATGGTTTTCCATCTTCTAGCAATCACCCTTCTCGGC ATGATTGTCCCCCAGGACTCGGTGTCTGTGGCATTTTCTAGCGACGCCAATCACGAGGCTGCCGCATCGGCATTC GTTGCTGCTCTGTATCTGGCAGGCATCTCCGTGCTACCGGACATGTTGAATGCATTCATACTGTTATTCGTCCTG TCAATCGCAGACTACGATCTCTATCTGGCGACCAAGGCAATGTGCGACCTCGCAGTGAAGCGCCGGGCTCCTGCT TTCCTATCACGCACTACCCGAAGAGGCGTCCCGATCTACGCTTTGGCGGTATGCTCGTCAACTGCAACATTGGCG TATCTTAACGTCCGCCAAGACTCAACTGTTGTCTTTGGATACTTCGTGGACATGGTCACCATGCTCGGGCTTCTG ACATGGATTTCCATTCTCATCACCCACATATCTTTTGTGCGAGCGCGAAAGGCTCAAGGTATTCCCGACAAAGCT CTAGCCTTTAGAGCTCGCTTCGGTCTGCCTGGAACGTGTTTGGCTCTCATTCTCTGCTTGTTCATCTCTGTCGCC ATTGTCTTTGACTCCTTCAGCTTCGATTCGGGCGTTCGGACATTCGACGTCAAATCTTTTATTGCCTCGTACATC AGTATTCCTGTCTACATCATCTTGATGGTTGGCTACAAGCTCGCTGTTCATAGTAAACACGTTGACCCCAAGGAG GCTGACCTATGGACAGATAAGATTGAGCCGGAGATTGAGAGAGGGGGGGGCCCTAGCTGA |
| Gene | >Pro_DTO377G3_2|g5503.t1 ATGTTTCCGCGACGCCGACCGGGATCTCGATCCTCTGCCTGCGAACTCGGACCCATCAGCGTCGAGCCAACGATA CCACAAACAATCCCAGAAACTCATCAGATTGAACATGCCCTAGGCTTCACCGATATATACGGGTCATTGACACCC CGTCAAATCAGCATCATCAGTCTGTACCCTCCATCTCGTACGGGGACTTGCATTTTAACACAGGTTTGCAGCTAT TGGATCTGCAATTGGAACGGGCTTGATGGTAGGTACTGGAAGAGCATTGTCTATGTAAGATTGGTTCATTATACC GAGCGGATTCCTTCTGTGCTGAAATTTGCTGACTCCGACACAGGAGCGGCGTACGTTATTCCCAAAAAGCTTATG AGCGAAGATATTGATTCCTCGTAGCCGGCAGCTATTATAATCTCCTACACCATCGTCGGACTCGCCGTTTACCTC GTCCTTTCTGCCTTGGGTGAGGTGGGCTCTTGGTTACCAAAACCGTATACCGTTGCAGACCAAGCCGTTCGATTC TGTCATCCTGCACTTGGATTCAGCTTGGGCTGGATGTAAGTCCCCCTTCGCGATGAGAATTGCGTCTAATTGATT TATTACTGACCGCGCCCCTAGATTTTGGCTGAAATATGCTGTTGTCACACCGAATCAGCTCACAGCTGCAGCGCT GGTAGTCTCTTATTGGGTGAGTGCGGAGCGAGTCAACCCCGGTATCTGGATTACGGTTTTCCTTTCTGTCATTGT GATTCTCAACTTCATCAATCATCGCCTCCCGAGCAGAATTGAGTTCTATGTCTCTTCCTTCAAGCTTGTCGTCAT GCTAGGACTCATGATACTTTCCACTGTCATTGCTCTGGGAGGGGGGCCAGATCAAGACCGAAAAGGGTTTCGATA TTGGTCGTACCATGGTGCTTTCGGCCCTCACCACCATCATCACGCGTTGCTAGAGAAGTTCTACATAACCTGCTC GACGATGTCATCTGCTACGTTTGCGTACATCGGAAGCGAGCGGGCTGGCATGACTCACTTCCCGAACGTTCGTAA AGCTACCTCGAGGGCCATCCAGAATACTTTCTATCGAATCATGGTTTTCCATCTTCTAGCAATCACCCTTCTCGG CATGATTGTCCCCCAGGACTCGGTGTCTGTGGCATTTTCTAGCGACGCCAATCACGAGGCTGCCGCATCGGCATT CGTTGCTGCTCTGTATCTGGCAGGCATCTCCGTGCTACCGGACATGTTGAATGCATTCATACTGTTATTCGTCCT GTCAATCGCAGACTACGATCTCTATCTGGCGACCAAGGCAATGTGCGACCTCGCAGTGAAGCGCCGGGCTCCTGC TTTCCTATCACGCACTACCCGAAGAGGCGTCCCGATCTACGCTTTGGCGGTATGCTCGTCAACTGCAACATTGGC GTATCTTAACGTCCGCCAAGACTCAACTGTTGTCTTTGGATACTTCGTGGACATGGTCACCATGCTCGGGCTTCT GACATGGATTTCCATTCTCATCACCCACATATCTTTTGTGCGAGCGCGAAAGGCTCAAGGTATTCCCGACAAAGC TCTAGCCTTTAGAGCTCGCTTCGGTCTGCCTGGAACGTGTTTGGCTCTCATTCTCTGCTTGTTCATCTCTGTCGC CATTGTCTTTGACTCCTTCAGCTTCGATTCGGGCGTTCGGACATTCGACGTCAAATCTTTTATTGCCTCGTACAT CAGTATTCCTGTCTACATCATCTTGATGGTTGGCTACAAGCTCGCTGTTCATAGTAAACACGTTGACCCCAAGGA GGCTGACCTATGGACAGATAAGATTGAGCCGGAGATTGAGAGAGGGGGGGGCCCTAGCTGA |