© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g55.t1 |
| Gene name | |
| Location | scaffold_01:135282..136824 |
| Strand | + |
| Gene length (bp) | 1542 |
| Transcript length (bp) | 1425 |
| Coding sequence length (bp) | 1425 |
| Protein length (aa) | 475 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00171 | Aldedh | Aldehyde dehydrogenase family | 3.0E-141 | 25 | 470 |
| PF05893 | LuxC | Acyl-CoA reductase (LuxC) | 1.1E-04 | 45 | 295 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003995 | acyl-CoA dehydrogenase activity | Yes |
| GO:0008218 | bioluminescence | Yes |
| GO:0008150 | biological_process | No |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | No |
| GO:0009987 | cellular process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 4.48 | 1.21 | 7.76 |
| 5d_25C | Five days - 25 degrees Celsius | 3.03 | 0.75 | 5.30 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.19 | 0.43 | 3.94 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.76 | 0.56 | 4.97 |
| 7d_15C | Seven days - 15 degrees Celsius | 3.11 | 0.77 | 5.44 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.56 | 2.72 | 12.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.397979 | no |
| 3d_25C | 7d_25C | 0.091904 | no |
| 3d_25C | 7d_15C | 0.431201 | no |
| 3d_25C | 7d_30C | 0.200317 | no |
| 3d_25C | 10d_25C | 0.307536 | no |
| 5d_25C | 7d_25C | 0.516453 | no |
| 5d_25C | 7d_15C | 0.969214 | no |
| 5d_25C | 7d_30C | 0.014377 | yes |
| 5d_25C | 10d_25C | 0.887156 | no |
| 7d_25C | 7d_15C | 0.477885 | no |
| 7d_25C | 7d_30C | 0.001804 | yes |
| 7d_25C | 10d_25C | 0.688432 | no |
| 7d_15C | 7d_30C | 0.013810 | yes |
| 7d_15C | 10d_25C | 0.850014 | no |
| 7d_30C | 10d_25C | 0.011388 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g55.t1 MADSTLNFETFFNIVNGESRVSDTTTFSVDPSTESKLWSVPVASKNDVEDAVRSANEAFKSWSTTPFEERVGKLV QWRQLYEPYIEDFTKLLMAECGKPRGVAAGEANEVLALFDHNVQLRIPEERLEDESRIAITRHVPVGVVAAICPW NFPLVLSIGKILPALLTGCTIIVKPSPFTPYSALKFVELAQQILPPGVVQAIGGEDSIGPALVQHPNVNKISFTG SSATGKRIMASAAATLKRVTLELGGNDPAIVYPDVDIEKTAPEVAMGCFVFCGQVCVATKRVYVHESIYEPFLKA MVDAVSQMEVGKADSPSTVLGPMQNKMQYDKVQDLVADTKAQGYKFALAPRAIEGKGYYISPSIVDNPPPTARIV VEEQFGPIVPVLKWSDENDVIARANGTTSGLGASVWSGDASRAEKVAKQMQAGSVFVNSWAKTTPRAMLSGHKES GIGGEWGSTGFLEYCNTQVVHLFK* |
| Coding | >Pro_DTO377G3_2|g55.t1 ATGGCCGACTCAACCCTAAACTTCGAAACCTTCTTCAACATAGTCAATGGCGAGAGCCGAGTCTCCGATACCACG ACATTCAGCGTTGATCCTTCCACGGAATCCAAGCTATGGAGTGTGCCCGTGGCCTCCAAGAATGACGTGGAAGAT GCTGTTCGCTCTGCCAATGAAGCATTCAAGTCCTGGTCTACGACACCCTTTGAGGAGCGAGTGGGCAAGCTCGTT CAGTGGAGACAGCTTTACGAGCCATACATTGAGGATTTCACCAAGCTACTAATGGCAGAGTGTGGCAAACCCCGT GGCGTAGCAGCCGGCGAGGCGAACGAAGTTCTTGCTCTGTTTGATCACAACGTGCAGCTTCGCATTCCGGAAGAG AGGCTCGAAGACGAGAGCCGCATCGCAATCACTCGTCATGTCCCTGTTGGAGTCGTCGCTGCTATCTGCCCATGG AATTTCCCTCTCGTCTTGTCTATTGGAAAGATCCTGCCAGCTTTGCTGACCGGATGTACGATCATTGTCAAGCCG TCGCCCTTCACGCCGTACTCGGCACTCAAATTTGTTGAACTGGCGCAGCAAATCTTGCCTCCCGGCGTCGTCCAA GCCATTGGTGGCGAGGACTCTATTGGCCCAGCGCTGGTTCAGCACCCCAATGTCAACAAGATTTCATTCACGGGA TCCAGTGCAACTGGAAAGAGAATCATGGCTTCCGCAGCCGCGACACTGAAACGTGTGACTCTTGAACTGGGAGGA AATGATCCAGCAATTGTCTACCCTGATGTGGACATCGAAAAAACTGCCCCTGAAGTGGCCATGGGGTGCTTCGTC TTCTGCGGTCAAGTTTGCGTCGCCACCAAGAGAGTATACGTCCACGAAAGCATTTACGAGCCATTCCTGAAGGCT ATGGTGGATGCGGTCTCTCAAATGGAGGTGGGCAAGGCTGACAGCCCTAGCACTGTACTGGGTCCGATGCAGAAC AAAATGCAGTATGACAAAGTCCAGGACCTGGTTGCCGATACCAAAGCCCAGGGCTACAAATTCGCTCTCGCTCCG CGTGCGATAGAAGGAAAAGGCTACTACATCTCTCCAAGCATTGTGGACAATCCTCCTCCGACCGCACGAATCGTT GTGGAAGAGCAATTTGGTCCAATTGTGCCAGTCCTCAAATGGTCCGATGAAAATGATGTTATCGCTCGCGCCAAC GGAACGACTTCGGGCCTTGGCGCATCCGTGTGGAGTGGAGATGCTTCCCGAGCCGAGAAAGTAGCCAAGCAAATG CAGGCTGGAAGTGTCTTTGTGAATTCCTGGGCGAAAACCACGCCTCGGGCGATGTTGTCTGGGCACAAAGAGAGT GGAATCGGCGGTGAATGGGGCTCTACAGGGTTCCTTGAGTACTGTAACACGCAAGTTGTGCACTTATTCAAGTGA |
| Transcript | >Pro_DTO377G3_2|g55.t1 ATGGCCGACTCAACCCTAAACTTCGAAACCTTCTTCAACATAGTCAATGGCGAGAGCCGAGTCTCCGATACCACG ACATTCAGCGTTGATCCTTCCACGGAATCCAAGCTATGGAGTGTGCCCGTGGCCTCCAAGAATGACGTGGAAGAT GCTGTTCGCTCTGCCAATGAAGCATTCAAGTCCTGGTCTACGACACCCTTTGAGGAGCGAGTGGGCAAGCTCGTT CAGTGGAGACAGCTTTACGAGCCATACATTGAGGATTTCACCAAGCTACTAATGGCAGAGTGTGGCAAACCCCGT GGCGTAGCAGCCGGCGAGGCGAACGAAGTTCTTGCTCTGTTTGATCACAACGTGCAGCTTCGCATTCCGGAAGAG AGGCTCGAAGACGAGAGCCGCATCGCAATCACTCGTCATGTCCCTGTTGGAGTCGTCGCTGCTATCTGCCCATGG AATTTCCCTCTCGTCTTGTCTATTGGAAAGATCCTGCCAGCTTTGCTGACCGGATGTACGATCATTGTCAAGCCG TCGCCCTTCACGCCGTACTCGGCACTCAAATTTGTTGAACTGGCGCAGCAAATCTTGCCTCCCGGCGTCGTCCAA GCCATTGGTGGCGAGGACTCTATTGGCCCAGCGCTGGTTCAGCACCCCAATGTCAACAAGATTTCATTCACGGGA TCCAGTGCAACTGGAAAGAGAATCATGGCTTCCGCAGCCGCGACACTGAAACGTGTGACTCTTGAACTGGGAGGA AATGATCCAGCAATTGTCTACCCTGATGTGGACATCGAAAAAACTGCCCCTGAAGTGGCCATGGGGTGCTTCGTC TTCTGCGGTCAAGTTTGCGTCGCCACCAAGAGAGTATACGTCCACGAAAGCATTTACGAGCCATTCCTGAAGGCT ATGGTGGATGCGGTCTCTCAAATGGAGGTGGGCAAGGCTGACAGCCCTAGCACTGTACTGGGTCCGATGCAGAAC AAAATGCAGTATGACAAAGTCCAGGACCTGGTTGCCGATACCAAAGCCCAGGGCTACAAATTCGCTCTCGCTCCG CGTGCGATAGAAGGAAAAGGCTACTACATCTCTCCAAGCATTGTGGACAATCCTCCTCCGACCGCACGAATCGTT GTGGAAGAGCAATTTGGTCCAATTGTGCCAGTCCTCAAATGGTCCGATGAAAATGATGTTATCGCTCGCGCCAAC GGAACGACTTCGGGCCTTGGCGCATCCGTGTGGAGTGGAGATGCTTCCCGAGCCGAGAAAGTAGCCAAGCAAATG CAGGCTGGAAGTGTCTTTGTGAATTCCTGGGCGAAAACCACGCCTCGGGCGATGTTGTCTGGGCACAAAGAGAGT GGAATCGGCGGTGAATGGGGCTCTACAGGGTTCCTTGAGTACTGTAACACGCAAGTTGTGCACTTATTCAAGTGA |
| Gene | >Pro_DTO377G3_2|g55.t1 ATGGCCGACTCAACCCTAAACTTCGAAACCTTCTTCAACATAGTCAATGGCGAGAGCCGAGTCTCCGATACCACG ACATTCAGCGTTGATCCTTCCACGGAATCCAAGCTATGGAGTGTGCCCGTGGCCTCCAAGAATGACGTGGAAGAT GCTGTTCGCTCTGCCAATGAAGCATTCAAGTCCTGGTCTACGACACCCTTTGAGGAGCGAGTGGGCAAGCTCGTT CAGTGGAGACAGCTTTACGAGCCATACATTGAGGATTTCACCAAGCTACTAATGGCAGAGTGTGGCAAACCCCGT GGCGTAGCAGCCGGCGAGGCGAACGAAGTTCTTGCTCTGTTTGATCACAACGTGCAGCTTCGCATTCCGGAAGAG AGGCTCGAAGACGAGAGCCGCATCGCAATCACTCGTCATGTCCCTGTTGGAGTCGTCGCTGCTATCTGCCCATGG AATTTCCCTCTCGTCTTGTCTATTGGAAAGATCCTGCCAGCTTTGCTGACCGGATGTACGATCATTGTCAAGCCG TCGCCCTTCACGCCGTACTCGGCACTCAAATTTGTTGAACTGGCGCAGCAAATCTTGCCTCCCGGCGTCGTCCAA GCCATTGGTGGCGAGGACTCTATTGGCCCAGCGCTGGTTCAGCACCCCAATGTCAACAAGATTTCATTCACGGGA TCCAGTGCAACTGGAAAGAGAATCATGGCTTCCGCAGCCGCGACACTGAAACGTGTGACTCTTGAACTGTGCGTA TAATTCCCTCGCACGGCACTCGAAGAATATCCTGCTCACACACAAGATTTTCTAGGGGAGGAAATGATCCAGCAA TTGTCTACCCTGATGTGGACATCGAAAAAACTGCCCCTGAAGTGGCCATGGGGTGCTTCGTCTTCTGCGGTCAAG TTTGCGTCGCCACCAAGAGAGTATACGTCCACGAAAGCATTTACGAGCCATTCCTGAAGGCTATGGTGGATGCGG TCTCTCAAATGGAGGTGGGCAAGGCTGACAGCCCTAGCACTGTACTGGGTCCGATGCAGAACAAAATGCAGTATG ACAAAGTCCAGGACCTGGTTGCCGATACCAAAGCCCAGGGCTACAAATTCGCTCTCGCTCCGCGTGCGATAGAAG GAAAAGGCTACTACATCTCTCCAAGCATTGTGGACAATCCTCCTCCGACCGCACGAATCGTTGTGGAAGAGCAAT TTGGTTCGTTGATCAGTCCCATGGGAAAAAATGAACATACTAATTCTGCTGTGTTTAGGTCCAATTGTGCCAGTC CTCAAATGGTCCGATGAAAATGATGTTATCGCTCGCGCCAACGGAACGACTTCGGGCCTTGGCGCATCCGTGTGG AGTGGAGATGCTTCCCGAGCCGAGAAAGTAGCCAAGCAAATGCAGGCTGGAAGTGTCTTTGTGAATTCCTGGGCG AAAACCACGCCTCGGGCGATGTTGTCTGGGCACAAAGAGAGTGGAATCGGCGGTGAATGGGGCTCTACAGGGTTC CTTGAGTACTGTAACACGCAAGTTGTGCACTTATTCAAGTGA |