© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5492.t1 |
| Gene name | |
| Location | scaffold_13:263210..265386 |
| Strand | - |
| Gene length (bp) | 2176 |
| Transcript length (bp) | 1980 |
| Coding sequence length (bp) | 1980 |
| Protein length (aa) | 660 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01565 | FAD_binding_4 | FAD binding domain | 2.8E-19 | 182 | 325 |
| PF08031 | BBE | Berberine and berberine like | 1.4E-06 | 588 | 625 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.13 | 0.0 | 0.32 |
| 5d_25C | Five days - 25 degrees Celsius | 0.14 | 0.0 | 0.37 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.03 | 0.0 | 0.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.13 | 0.0 | 0.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.06 | 0.0 | 0.18 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.17 | 0.0 | 0.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.0 | no |
| 3d_25C | 7d_25C | 1.0 | no |
| 3d_25C | 7d_15C | 1.0 | no |
| 3d_25C | 7d_30C | 1.0 | no |
| 3d_25C | 10d_25C | 1.0 | no |
| 5d_25C | 7d_25C | 1.0 | no |
| 5d_25C | 7d_15C | 1.0 | no |
| 5d_25C | 7d_30C | 1.0 | no |
| 5d_25C | 10d_25C | 1.0 | no |
| 7d_25C | 7d_15C | 1.0 | no |
| 7d_25C | 7d_30C | 1.0 | no |
| 7d_25C | 10d_25C | 1.0 | no |
| 7d_15C | 7d_30C | 1.0 | no |
| 7d_15C | 10d_25C | 1.0 | no |
| 7d_30C | 10d_25C | 1.0 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5492.t1 MKGMWGVTLLASTSLAQAISTASLTEAATTVVATANSAPSLFQNEEVQLTEGVLSDVSAALQNSTVANMFAFASN STVLKRSAHRSCKLMPGDSWWPVAPIWDIFDILLGGSLIKAVPLASYCYPDWPQYDAAKCASVTADWLSSDLHME DPTSVMSPLYQGRSCLPSPFNYTASCTQGAYPTYAVNVSTVAQIQLAVNFARNLNLRLVVKNTGHDFNGKSSGKG ALSIWTHHLKDKEYLPNFKAANGYVGPAIKFGSGIQVHEAYEFAKTLGHSVVGGEAVTVGLGGGYVAGGGHSPLS SMYGLAADQVLAMQVVLADGRFITATSTENSEVFWMLRGGGGSTIGVVTSLTVKALPQLQTTTVTFNFTISDTPG PDAFWAAIQSYLDNFETFVDAGTYGYFYIGASDALIGTTYAGDPDYYFRMESFVAPNMTVAQTEALLAPWFDTLK SLNISFTPWYNHADNFHDAWAVAFPQEYVGTDVVKTASRLLPRSVFQSDDLRNQTWAAYKDAITQGLFIAGFHIS GTGIAAEPPTDNAVLPAWRDALSHVIVGSEWNFTSSWDVVESSSRFVTEWMDVLREIAPDSGAYMSEADLVEPNL QDAFYGVNYPRLYALKQKYDPTGLFFALTAVGAEDWEVQTLDPVPYSWNNNGRLCPKSS* |
| Coding | >Pro_DTO377G3_2|g5492.t1 ATGAAGGGCATGTGGGGAGTTACTCTCCTCGCGAGCACTTCGCTCGCTCAGGCGATATCGACCGCATCACTCACA GAAGCAGCAACTACGGTGGTGGCCACGGCCAATTCGGCACCTTCGTTATTCCAAAATGAGGAAGTGCAGTTGACC GAAGGTGTCCTCTCTGATGTGTCGGCGGCATTGCAGAATAGCACGGTCGCTAACATGTTCGCATTTGCGAGCAAC TCCACGGTACTCAAGAGGAGTGCTCATCGTAGCTGCAAGCTAATGCCCGGGGACTCCTGGTGGCCGGTGGCTCCA ATTTGGGACATCTTCGATATCTTGCTTGGCGGCAGCCTGATCAAAGCGGTGCCCCTGGCATCCTACTGCTATCCA GACTGGCCGCAGTACGATGCCGCCAAGTGCGCAAGCGTCACAGCTGACTGGCTCAGCTCGGACCTGCATATGGAA GATCCTACCTCGGTGATGTCGCCGCTATACCAAGGCCGCTCGTGCCTGCCATCACCGTTCAACTATACTGCCAGC TGCACGCAGGGCGCATATCCGACGTATGCAGTGAACGTATCCACCGTGGCTCAGATCCAGCTAGCGGTCAACTTT GCCCGTAACTTGAACTTGCGACTAGTGGTCAAGAATACTGGACATGATTTCAATGGCAAGTCCTCCGGCAAGGGT GCTCTCTCCATTTGGACCCACCACCTCAAGGACAAGGAGTATCTCCCGAACTTTAAGGCTGCCAATGGCTATGTT GGTCCGGCCATTAAGTTTGGCTCCGGTATCCAAGTCCATGAGGCTTATGAGTTTGCTAAGACCCTCGGCCACTCG GTTGTTGGCGGAGAAGCTGTCACTGTCGGTTTGGGCGGTGGCTACGTTGCTGGTGGTGGCCACTCTCCCCTTTCC AGTATGTACGGTCTGGCGGCCGATCAAGTTCTGGCTATGCAAGTTGTTCTGGCAGATGGAAGATTTATCACTGCC ACCTCCACTGAGAACTCGGAAGTCTTCTGGATGCTTCGCGGTGGTGGTGGTAGTACCATTGGAGTCGTCACCTCT CTTACAGTCAAGGCCCTACCTCAGCTGCAGACGACTACTGTGACCTTCAATTTCACAATCAGCGACACTCCTGGT CCGGACGCTTTCTGGGCTGCTATTCAGTCCTACCTCGACAATTTTGAGACTTTTGTTGATGCTGGCACCTACGGT TACTTCTATATCGGTGCTTCCGATGCTTTGATTGGTACGACGTATGCCGGTGATCCTGACTATTATTTCCGTATG GAATCCTTCGTCGCACCCAACATGACTGTTGCCCAGACGGAGGCACTCCTGGCTCCATGGTTTGATACCCTCAAA AGCCTTAATATCTCCTTCACTCCGTGGTACAACCACGCGGATAACTTCCATGATGCCTGGGCCGTGGCCTTCCCT CAGGAATACGTTGGAACCGATGTCGTGAAGACTGCCTCTCGCCTGCTCCCCCGCAGCGTTTTCCAGAGCGATGAT CTCCGCAATCAAACCTGGGCCGCCTACAAGGATGCTATCACCCAGGGTCTCTTCATTGCCGGCTTCCACATCAGC GGCACCGGCATTGCCGCTGAGCCCCCCACAGACAATGCCGTGCTCCCTGCATGGCGCGATGCCCTCTCACACGTT ATTGTCGGTTCCGAATGGAACTTCACCTCCTCCTGGGATGTGGTGGAGAGCTCATCGCGCTTCGTGACTGAGTGG ATGGACGTTCTACGTGAAATTGCCCCAGACTCAGGTGCCTACATGAGCGAGGCCGATCTTGTCGAGCCGAATCTC CAGGATGCCTTTTACGGTGTTAACTACCCTCGTCTCTATGCGCTCAAGCAGAAGTATGATCCTACGGGTCTTTTC TTTGCCCTGACTGCCGTTGGTGCTGAGGACTGGGAGGTTCAGACTCTTGACCCGGTGCCTTACTCGTGGAACAAC AATGGGCGACTCTGCCCAAAGTCTTCTTGA |
| Transcript | >Pro_DTO377G3_2|g5492.t1 ATGAAGGGCATGTGGGGAGTTACTCTCCTCGCGAGCACTTCGCTCGCTCAGGCGATATCGACCGCATCACTCACA GAAGCAGCAACTACGGTGGTGGCCACGGCCAATTCGGCACCTTCGTTATTCCAAAATGAGGAAGTGCAGTTGACC GAAGGTGTCCTCTCTGATGTGTCGGCGGCATTGCAGAATAGCACGGTCGCTAACATGTTCGCATTTGCGAGCAAC TCCACGGTACTCAAGAGGAGTGCTCATCGTAGCTGCAAGCTAATGCCCGGGGACTCCTGGTGGCCGGTGGCTCCA ATTTGGGACATCTTCGATATCTTGCTTGGCGGCAGCCTGATCAAAGCGGTGCCCCTGGCATCCTACTGCTATCCA GACTGGCCGCAGTACGATGCCGCCAAGTGCGCAAGCGTCACAGCTGACTGGCTCAGCTCGGACCTGCATATGGAA GATCCTACCTCGGTGATGTCGCCGCTATACCAAGGCCGCTCGTGCCTGCCATCACCGTTCAACTATACTGCCAGC TGCACGCAGGGCGCATATCCGACGTATGCAGTGAACGTATCCACCGTGGCTCAGATCCAGCTAGCGGTCAACTTT GCCCGTAACTTGAACTTGCGACTAGTGGTCAAGAATACTGGACATGATTTCAATGGCAAGTCCTCCGGCAAGGGT GCTCTCTCCATTTGGACCCACCACCTCAAGGACAAGGAGTATCTCCCGAACTTTAAGGCTGCCAATGGCTATGTT GGTCCGGCCATTAAGTTTGGCTCCGGTATCCAAGTCCATGAGGCTTATGAGTTTGCTAAGACCCTCGGCCACTCG GTTGTTGGCGGAGAAGCTGTCACTGTCGGTTTGGGCGGTGGCTACGTTGCTGGTGGTGGCCACTCTCCCCTTTCC AGTATGTACGGTCTGGCGGCCGATCAAGTTCTGGCTATGCAAGTTGTTCTGGCAGATGGAAGATTTATCACTGCC ACCTCCACTGAGAACTCGGAAGTCTTCTGGATGCTTCGCGGTGGTGGTGGTAGTACCATTGGAGTCGTCACCTCT CTTACAGTCAAGGCCCTACCTCAGCTGCAGACGACTACTGTGACCTTCAATTTCACAATCAGCGACACTCCTGGT CCGGACGCTTTCTGGGCTGCTATTCAGTCCTACCTCGACAATTTTGAGACTTTTGTTGATGCTGGCACCTACGGT TACTTCTATATCGGTGCTTCCGATGCTTTGATTGGTACGACGTATGCCGGTGATCCTGACTATTATTTCCGTATG GAATCCTTCGTCGCACCCAACATGACTGTTGCCCAGACGGAGGCACTCCTGGCTCCATGGTTTGATACCCTCAAA AGCCTTAATATCTCCTTCACTCCGTGGTACAACCACGCGGATAACTTCCATGATGCCTGGGCCGTGGCCTTCCCT CAGGAATACGTTGGAACCGATGTCGTGAAGACTGCCTCTCGCCTGCTCCCCCGCAGCGTTTTCCAGAGCGATGAT CTCCGCAATCAAACCTGGGCCGCCTACAAGGATGCTATCACCCAGGGTCTCTTCATTGCCGGCTTCCACATCAGC GGCACCGGCATTGCCGCTGAGCCCCCCACAGACAATGCCGTGCTCCCTGCATGGCGCGATGCCCTCTCACACGTT ATTGTCGGTTCCGAATGGAACTTCACCTCCTCCTGGGATGTGGTGGAGAGCTCATCGCGCTTCGTGACTGAGTGG ATGGACGTTCTACGTGAAATTGCCCCAGACTCAGGTGCCTACATGAGCGAGGCCGATCTTGTCGAGCCGAATCTC CAGGATGCCTTTTACGGTGTTAACTACCCTCGTCTCTATGCGCTCAAGCAGAAGTATGATCCTACGGGTCTTTTC TTTGCCCTGACTGCCGTTGGTGCTGAGGACTGGGAGGTTCAGACTCTTGACCCGGTGCCTTACTCGTGGAACAAC AATGGGCGACTCTGCCCAAAGTCTTCTTGA |
| Gene | >Pro_DTO377G3_2|g5492.t1 ATGAAGGGCATGTGGGGAGTTACTCTCCTCGCGAGCACTTCGCTCGCTCAGGCGATATCGACCGCATCACTCACA GAAGCAGCAACTACGGTGGTGGCCACGGCCAATTCGGCACCTTCGTTATTCCAAAATGAGGAAGTGCAGTTGACC GAAGGTGTCCTCTCTGATGTGTCGGCGGCATTGCAGAATAGCACGGTCGCTAACATGTTCGCATTTGCGAGCAAC TCCACGGTACTCAAGAGGAGTGCTCATCGTAGCTGCAAGCTAATGCCCGGGGACTCCTGGTGGCCGGTGGCTCCA ATTTGGGACATCTTCGATATCTTGCTTGGCGGCAGCCTGATCAAAGCGGTGCCCCTGGCATCCTACTGCTATCCA GACTGGCCGCAGTACGATGCCGCCAAGTGCGCAAGCGTCACAGCTGACTGGCTCAGCTCGGACCTGCATATGGAA GATCCTACCTCGGTGATGTCGCCGCTATACCAAGGCCGCTCGTGCCTGCCATCACCGTTCAACTATACTGCCAGC TGCACGCAGGGCGCATATCCGACGTATGCAGTGAACGTATCCACCGTGGCTCAGATCCAGCTAGCGGTCAACTTT GCCCGTAACTTGAACTTGCGACTAGTGGTCAAGAATACTGGACATGATTTCAATGGCAAGTCCTCCGGCAAGGGT GCTCTCTCCATTTGGACCCACCACCTCAAGGACAAGGAGTATCTCCCGAACTTTAAGGCTGCCAATGGCTATGTT GGTCCGGCCATTAAGTTTGGCTCCGGTATCCAAGTCCATGAGGCTTATGAGTTTGCTAAGACCCTCGGCCACTCG GTTGTTGGCGGAGAAGCTGTCACTGTCGGTTTGGGCGGTGGCTACGTTGCTGGTGGTGGCCACTCTCCCCTTTCC AGTATGTACGGTCTGGCGGCCGATCAAGTTCTGGCTATGCAAGGTAAGTCTCTTTTTCTATGAGAAATTTGTGCA AAGAATCTCCCTATTAACTCTGTTTAGTTGTTCTGGCAGATGGAAGATTTATCACTGCCACCTCCACTGAGAACT CGGAAGTCTTCTGGATGCTTCGCGGTGGTGGTGGTAGTACCATTGGAGTCGTCACCTCTCTTACAGTCAAGGCCC TACCTCAGCTGCAGACGACTACTGTGACCTTCAATTTCACAATCAGCGACACTCCTGGTCCGGACGCTTTCTGGG CTGCTATTCAGTCCTACCTCGACAATTTTGAGACTTTTGTTGATGCTGGCACCTACGGTTACTTCTATATCGGTG CTTCCGATGCTTTGATTGGTACGACGTATGCCGGTGATCCTGACTATTATTTCCGTATGGAATCCTTCGTCGCAC CCAACATGACTGTTGCCCAGACGGAGGCACTCCTGGCTCCATGGTTTGATACCCTCAAAAGCCTTAATATCTCCT TCACTCCGTGGTACAACCACGCGGATAACTTGTACGTCTGAGTTCTCCCCGTTCCTTGCAAAATCTGTGCATCTA CATCCCAGCTAAAACTTTCTTCCAGCCATGATGCCTGGGCCGTGGCCTTCCCTCAGGAATACGTTGGAACCGATG TCGTGAAGACTGCCTCTCGCCTGCTCCCCCGCAGCGTTTTCCAGAGCGATGATCTCCGCAATCAAACCTGGGCCG CCTACAAGGATGCTATCACCCAGGTATGTCATATATGCATACACAAATGCATAATCTCTCCCCTTTTGAAATAAT TTCTGACATGTTATAGGGTCTCTTCATTGCCGGCTTCCACATCAGCGGCACCGGCATTGCCGCTGAGCCCCCCAC AGACAATGCCGTGCTCCCTGCATGGCGCGATGCCCTCTCACACGTTATTGTCGGTTCCGAATGGAACTTCACCTC CTCCTGGGATGTGGTGGAGAGCTCATCGCGCTTCGTGACTGAGTGGATGGACGTTCTACGTGAAATTGCCCCAGA CTCAGGTGCCTACATGAGCGAGGCCGATCTTGTCGAGCCGAATCTCCAGGATGCCTTTTACGGTGTTAACTACCC TCGTCTCTATGCGCTCAAGCAGAAGTATGATCCTACGGGTCTTTTCTTTGCCCTGACTGCCGTTGGTGCTGAGGA CTGGGAGGTTCAGACTCTTGACCCGGTGCCTTACTCGTGGAACAACAATGGGCGACTCTGCCCAAAGTCTTCTTG A |