© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5473.t1 |
| Gene name | |
| Location | scaffold_13:213558..215704 |
| Strand | - |
| Gene length (bp) | 2146 |
| Transcript length (bp) | 1647 |
| Coding sequence length (bp) | 1647 |
| Protein length (aa) | 549 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 3.8E-45 | 54 | 496 |
| PF00324 | AA_permease | Amino acid permease | 5.8E-15 | 70 | 462 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 47 | 66 | 19 |
| 2 | 79 | 101 | 22 |
| 3 | 178 | 197 | 19 |
| 4 | 204 | 226 | 22 |
| 5 | 248 | 270 | 22 |
| 6 | 291 | 313 | 22 |
| 7 | 341 | 363 | 22 |
| 8 | 394 | 416 | 22 |
| 9 | 421 | 440 | 19 |
| 10 | 461 | 483 | 22 |
| 11 | 487 | 509 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.56 | 18.64 | 46.48 |
| 5d_25C | Five days - 25 degrees Celsius | 18.05 | 9.14 | 26.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.76 | 10.20 | 29.33 |
| 10d_25C | Ten days - 25 degrees Celsius | 14.14 | 6.75 | 21.54 |
| 7d_15C | Seven days - 15 degrees Celsius | 21.79 | 11.52 | 32.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.64 | 5.24 | 18.04 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.015558 | yes |
| 3d_25C | 7d_25C | 0.042614 | yes |
| 3d_25C | 7d_15C | 0.112569 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.811285 | no |
| 5d_25C | 7d_15C | 0.561897 | no |
| 5d_25C | 7d_30C | 0.120895 | no |
| 5d_25C | 10d_25C | 0.441739 | no |
| 7d_25C | 7d_15C | 0.798087 | no |
| 7d_25C | 7d_30C | 0.055847 | no |
| 7d_25C | 10d_25C | 0.268492 | no |
| 7d_15C | 7d_30C | 0.018295 | yes |
| 7d_15C | 10d_25C | 0.120090 | no |
| 7d_30C | 10d_25C | 0.583725 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5473.t1 MASHDPVAGSADLLTHEGEGDRAELKKQDDTALLETMGYKPVLHRTYTLFENFSTTFAALYFVGGVRVTFSTGIA AGGNLAYWTSYLVTMVFTFITAAVIAEVCSASPSAGSIYLWAAEAGGPRFGRLLGFIVAWWSTTAWTTFCASNTQ AAANYMLAEITVFNLDFPSDSSSVKFRAVQWICTEILLALAALLNFLPPRYFKYVFWWSSAVVMLDFILNIVWLP IGTAQTWGFRTTHEAFMTTYNGTGAPAGWNWCLSYLATAGILIGFDASGHVAEETKNASITAARGIFWSTVASGF GGLATIILFLFCAPDADTLMGFGGPQPFVPLYAVVLGKGGHIFMNIICIFALWLNTAIAIIAASRLVFAVARDGV LPFSGWVSRVKDGQPRNAVIVVWVVAALVSCTILPSATAFTSLVSAAGVPSAAAYGLICLGRLFCTPSRFPKPQW SLGRWSKPFQFIGVFWNGWVVAVLFSPYVFPVTGENLNYAPIIMAGVTIFALISYFMMPESAWLPRDRITHFIDS KGAVQATVDEVGSTDHGETSGGQ* |
| Coding | >Pro_DTO377G3_2|g5473.t1 ATGGCTTCCCACGACCCTGTCGCCGGTTCCGCCGACCTCCTCACCCATGAAGGTGAAGGTGACCGGGCTGAGCTC AAGAAACAGGATGATACCGCTTTATTGGAAACTATGGGCTATAAGCCAGTTCTTCATCGGACATACACTTTGTTC GAGAATTTTTCAACCACGTTCGCTGCTCTGTACTTTGTTGGCGGTGTCCGCGTTACTTTCAGCACTGGTATTGCC GCCGGTGGAAACCTGGCCTATTGGACTAGTTACCTAGTAACCATGGTATTCACGTTCATTACTGCTGCTGTCATC GCCGAGGTCTGTTCGGCTTCTCCATCCGCCGGGTCAATCTACTTGTGGGCCGCCGAAGCTGGTGGGCCTCGATTT GGCCGACTGCTTGGCTTTATCGTCGCCTGGTGGAGTACAACGGCTTGGACGACTTTCTGTGCAAGCAACACCCAG GCTGCGGCGAATTACATGCTTGCGGAAATAACCGTATTCAACCTCGATTTCCCATCAGACTCAAGCAGCGTGAAG TTCCGCGCAGTCCAGTGGATCTGCACTGAGATCTTGCTTGCTCTGGCCGCCCTGTTGAACTTTTTGCCTCCTCGC TATTTCAAATATGTCTTTTGGTGGTCTTCCGCAGTCGTGATGCTCGACTTTATCCTGAACATTGTCTGGCTGCCC ATTGGCACCGCTCAAACCTGGGGATTCCGTACCACCCACGAGGCCTTCATGACCACGTACAACGGTACCGGAGCC CCGGCTGGCTGGAACTGGTGTCTTTCTTATCTTGCTACCGCTGGCATTCTGATTGGGTTTGATGCCTCGGGTCAC GTTGCGGAAGAAACCAAGAATGCGTCGATCACTGCTGCGCGTGGTATTTTCTGGAGTACCGTTGCCAGTGGGTTC GGTGGTTTGGCTACGATTATTCTCTTTTTGTTCTGCGCTCCCGACGCCGACACACTCATGGGTTTCGGTGGGCCC CAACCCTTTGTGCCTCTTTACGCTGTTGTTCTAGGCAAGGGCGGCCATATCTTCATGAACATCATTTGCATTTTC GCTTTGTGGCTGAACACCGCAATTGCCATCATCGCCGCCTCTCGCCTTGTCTTCGCCGTCGCCCGTGATGGTGTA CTCCCATTCTCCGGCTGGGTCTCTCGTGTAAAGGACGGTCAGCCACGGAACGCAGTTATTGTTGTCTGGGTTGTC GCCGCCCTAGTCAGTTGCACCATTCTTCCATCCGCCACGGCTTTCACTTCCCTTGTCTCGGCAGCCGGTGTCCCC AGCGCTGCCGCCTACGGTCTGATCTGTCTGGGTCGACTATTCTGCACTCCGTCGCGGTTCCCGAAGCCACAGTGG AGTCTCGGCCGCTGGAGTAAGCCGTTCCAGTTCATTGGTGTCTTCTGGAACGGCTGGGTTGTCGCTGTCCTGTTC TCGCCCTACGTGTTCCCAGTCACTGGCGAGAATCTGAATTACGCCCCCATTATCATGGCTGGAGTCACCATCTTC GCATTGATCTCCTACTTCATGATGCCAGAGAGTGCTTGGCTTCCTCGAGACCGCATCACTCACTTTATTGATAGT AAGGGCGCTGTCCAGGCGACCGTGGATGAAGTTGGCTCTACTGACCATGGTGAAACGAGTGGTGGTCAATGA |
| Transcript | >Pro_DTO377G3_2|g5473.t1 ATGGCTTCCCACGACCCTGTCGCCGGTTCCGCCGACCTCCTCACCCATGAAGGTGAAGGTGACCGGGCTGAGCTC AAGAAACAGGATGATACCGCTTTATTGGAAACTATGGGCTATAAGCCAGTTCTTCATCGGACATACACTTTGTTC GAGAATTTTTCAACCACGTTCGCTGCTCTGTACTTTGTTGGCGGTGTCCGCGTTACTTTCAGCACTGGTATTGCC GCCGGTGGAAACCTGGCCTATTGGACTAGTTACCTAGTAACCATGGTATTCACGTTCATTACTGCTGCTGTCATC GCCGAGGTCTGTTCGGCTTCTCCATCCGCCGGGTCAATCTACTTGTGGGCCGCCGAAGCTGGTGGGCCTCGATTT GGCCGACTGCTTGGCTTTATCGTCGCCTGGTGGAGTACAACGGCTTGGACGACTTTCTGTGCAAGCAACACCCAG GCTGCGGCGAATTACATGCTTGCGGAAATAACCGTATTCAACCTCGATTTCCCATCAGACTCAAGCAGCGTGAAG TTCCGCGCAGTCCAGTGGATCTGCACTGAGATCTTGCTTGCTCTGGCCGCCCTGTTGAACTTTTTGCCTCCTCGC TATTTCAAATATGTCTTTTGGTGGTCTTCCGCAGTCGTGATGCTCGACTTTATCCTGAACATTGTCTGGCTGCCC ATTGGCACCGCTCAAACCTGGGGATTCCGTACCACCCACGAGGCCTTCATGACCACGTACAACGGTACCGGAGCC CCGGCTGGCTGGAACTGGTGTCTTTCTTATCTTGCTACCGCTGGCATTCTGATTGGGTTTGATGCCTCGGGTCAC GTTGCGGAAGAAACCAAGAATGCGTCGATCACTGCTGCGCGTGGTATTTTCTGGAGTACCGTTGCCAGTGGGTTC GGTGGTTTGGCTACGATTATTCTCTTTTTGTTCTGCGCTCCCGACGCCGACACACTCATGGGTTTCGGTGGGCCC CAACCCTTTGTGCCTCTTTACGCTGTTGTTCTAGGCAAGGGCGGCCATATCTTCATGAACATCATTTGCATTTTC GCTTTGTGGCTGAACACCGCAATTGCCATCATCGCCGCCTCTCGCCTTGTCTTCGCCGTCGCCCGTGATGGTGTA CTCCCATTCTCCGGCTGGGTCTCTCGTGTAAAGGACGGTCAGCCACGGAACGCAGTTATTGTTGTCTGGGTTGTC GCCGCCCTAGTCAGTTGCACCATTCTTCCATCCGCCACGGCTTTCACTTCCCTTGTCTCGGCAGCCGGTGTCCCC AGCGCTGCCGCCTACGGTCTGATCTGTCTGGGTCGACTATTCTGCACTCCGTCGCGGTTCCCGAAGCCACAGTGG AGTCTCGGCCGCTGGAGTAAGCCGTTCCAGTTCATTGGTGTCTTCTGGAACGGCTGGGTTGTCGCTGTCCTGTTC TCGCCCTACGTGTTCCCAGTCACTGGCGAGAATCTGAATTACGCCCCCATTATCATGGCTGGAGTCACCATCTTC GCATTGATCTCCTACTTCATGATGCCAGAGAGTGCTTGGCTTCCTCGAGACCGCATCACTCACTTTATTGATAGT AAGGGCGCTGTCCAGGCGACCGTGGATGAAGTTGGCTCTACTGACCATGGTGAAACGAGTGGTGGTCAATGA |
| Gene | >Pro_DTO377G3_2|g5473.t1 ATGGCTTCCCACGACCCTGTCGCCGGTTCCGCCGACCTCCTCACCCATGAAGGTGAAGGTGACCGGGCTGAGCTC AAGAAACAGGATGATACCGCTTTATTGGTAGGTGTATCCAGGCCTTGTTTTGTAAACATCAACCTAACATGAAAT CTTCTAGGAAACTATGGGCTATAAGCCAGTACGTCGAATCGTAGATTTAAGATGTCTCGTGGTCAGCAACTGATT CACTAAACAGGTTCTTCATCGGACATACACTTTGTTCGAGAATTTTTCAACCACGTTCGGTACGTTTTTCGCTGT CACTACTTTGTGGGTGCATTTATACTGACTCTTTCTAGCTGCTCTGTACTTTGTTGGCGGTGTCCGCGTTACTTT CAGCACTGGTATTGCCGCCGGTGGAAACCTGGCCTATTGGACTAGTTACCTAGTAACCATGGTATTCACGTTCAT TACTGCTGCTGTCATCGCCGAGGTCTGTTCGGCTTCTCCATCCGCCGGGTCAATCTACTTGTGGGCCGCCGAAGC TGGTGGGCCTCGATTTGGCCGACTGCTTGGCTTTATCGTCGCCTGGTGGAGTACAACGGCTTGGACGACTTTCTG TGCAAGTATGTTGCGTATCTACCTTAAGACAAGGATTACATGGTGCTAATTTGATTATAGGCAACACCCAGGCTG CGGCGAATTACATGCTTGCGGTATGCTTTTTTTCTTTCTTGGTTTCCCGGGATTCAGACTGATACATTGCGTTTA GGAAATAACCGTATTCAACCTCGATTTCCCATCAGACTCAAGCAGCGTGAAGTTCCGCGCAGTCCAGTGGATCTG CACTGAGATCTTGCTTGCTCTGGCCGCCCTGTTGAACTTTTTGCCTCGTATGTACAAACGCGTAACTTTGATTCA TCACCTCTGACAGCATTCTAGCTCGCTATTTCAAATATGTCTTTTGGTGGTCTTCCGCAGTCGTGATGCTCGACT TTATCCTGAACATTGTCTGGCTGCCCATTGGCACCGCTCAAACCTGGGGATTCCGTACCACCCACGAGGCCTTCA TGACCACGTACAACGGTACCGGAGCCCCGGCTGGCTGGAACTGGTGTCTTTCTTATCTTGCTACCGCTGGCATTC TGATTGGGTTTGATGCCTCGGGTCACGTTGCGGAAGAAACCAAGAATGCGTCGATCACTGCTGCGCGTGGTATTT TCTGGAGTACCGTTGCCAGTGGGTTCGGTGGTTTGGCTACGATTATTCTCTTTTTGTTCTGCGCTGTTCGTCTCC CGTCGTCTCTGCGAACGCCGAAATTCGAAATTCTGACCTTGTTTTTCTATAGCCCGACGCCGACACACTCATGGG TTTCGGTGGGCCCCAACCCTTTGTGCCTCTTTACGCTGTTGTTCTAGGCAAGGGCGGCCATATCTTCATGAACAT CATTTGCATTTTCGCTTTGTGGCTGGTGAGCTATCATTCTGTGCACGGATATCTCATATCTCACAACTGACTTTC ATTCTCAGAACACCGCAATTGCCATCATCGCCGCCTCTCGCCTTGTCTTCGCCGTCGCCCGTGATGGTGTACTCC CATTCTCCGGCTGGGTCTCTCGTGTAAAGGACGGTCAGCCACGGAACGCAGTTATTGTTGTCTGGGTTGTCGCCG CCCTAGTCAGTTGCACCATTCTTCCATCCGCCACGGCTTTCACTTCCCTTGTCTCGGCAGCCGGTGTCCCCAGCG CTGCCGCCTACGGTCTGATCTGTCTGGGTCGACTATTCTGCACTCCGTCGCGGTTCCCGAAGCCACAGTGGAGTC TCGGCCGCTGGAGTAAGCCGTTCCAGTTCATTGGTGTCTTCTGGAACGGCTGGGTTGTCGCTGTCCTGTTCTCGC CCTACGTGTTCCCAGTCACTGGCGAGAATCTGAATTGTAAGATGTTCTTTCTTATAAGGTTTTATCGCGCTAACT AAGTTGCTTGATAGACGCCCCCATTATCATGGCTGGAGTCACCATCTTCGCATTGATCTCCTACTTCATGATGCC AGAGAGTGCTTGGCTTCCTCGAGACCGCATCACTCACTTTATTGATAGTAAGGGCGCTGTCCAGGCGACCGTGGA TGAAGTTGGCTCTACTGACCATGGTGAAACGAGTGGTGGTCAATGA |