© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5471.t1 |
| Gene name | |
| Location | scaffold_13:205782..206899 |
| Strand | + |
| Gene length (bp) | 1117 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01151 | ELO | GNS1/SUR4 family | 4.7E-64 | 51 | 291 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0009922 | fatty acid elongase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0016740 | transferase activity | No |
| GO:0016746 | acyltransferase activity | No |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0004312 | fatty acid synthase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 36 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 83 | 105 | 22 |
| 2 | 183 | 205 | 22 |
| 3 | 224 | 246 | 22 |
| 4 | 261 | 283 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5471.t1 MASEILKYVDVPTLDRPFGVHLWPLFDQAYEKVMGYPASKFNFTEGVTPLSTLKETTMMLVTYYVLIFGGREVMK KLPAFKLNTLFMIHNLLLTTVSAILLALFIEQLLPTLWRHGVFYTICDQQGGWTRPLIILYYLNYINKYVEFIDT IFLVLKKKPLTFLHTYHHGATALLCYTQLIGVTAVQWVPITINLLVHVVMYWYYFQSARGVRIWWKKYITMLQIL QFVIDVGFIYFASYTYFTSAYFPWLPNMGKCAGEEFAALAGIGIISSYLVLFISFYIATYNKTAKTGRPRRNTGQ KSLIDMRNFEIPSPAGTKSAKSTGRSNGPVTRSRKA* |
| Coding | >Pro_DTO377G3_2|g5471.t1 ATGGCTTCCGAAATCCTTAAATATGTCGATGTCCCGACTCTCGATCGACCCTTTGGTGTGCACCTGTGGCCCCTC TTCGACCAGGCCTACGAGAAGGTCATGGGGTATCCCGCCAGCAAGTTCAACTTCACCGAGGGTGTGACCCCTCTG TCCACCTTGAAGGAGACTACAATGATGCTTGTCACCTACTACGTTCTCATCTTCGGTGGCCGCGAGGTGATGAAG AAGTTGCCTGCGTTCAAGCTTAACACCTTGTTCATGATCCACAACCTCCTTTTGACCACCGTTAGCGCTATCCTG CTGGCCTTGTTCATTGAGCAGCTTCTTCCCACTCTCTGGAGACACGGAGTCTTCTACACTATCTGTGACCAGCAG GGTGGTTGGACTCGCCCTCTGATCATTCTGTACTACCTCAACTACATCAACAAATACGTCGAGTTCATTGATACT ATCTTCCTTGTCCTCAAGAAGAAGCCATTGACCTTCCTCCACACCTACCACCACGGTGCCACCGCCCTCCTCTGC TACACTCAGCTTATCGGTGTGACTGCCGTGCAGTGGGTGCCTATCACCATCAACCTGCTTGTCCATGTCGTGATG TACTGGTACTACTTTCAGAGTGCCCGTGGTGTTCGCATTTGGTGGAAGAAGTATATCACTATGCTGCAGATCCTC CAGTTCGTCATTGACGTCGGCTTCATTTACTTCGCCTCGTACACCTACTTCACCTCTGCCTACTTCCCGTGGCTT CCCAACATGGGCAAGTGTGCCGGTGAGGAATTCGCTGCCTTGGCTGGTATCGGCATCATCAGCTCCTACTTGGTC CTGTTCATCTCCTTCTACATTGCCACCTACAATAAGACCGCCAAGACTGGACGTCCCCGCCGCAACACTGGCCAA AAATCGTTGATCGACATGAGGAACTTTGAAATTCCTTCCCCGGCCGGTACCAAGAGCGCCAAGTCCACTGGCCGC TCCAACGGCCCTGTGACACGCTCTCGCAAGGCCTAA |
| Transcript | >Pro_DTO377G3_2|g5471.t1 ATGGCTTCCGAAATCCTTAAATATGTCGATGTCCCGACTCTCGATCGACCCTTTGGTGTGCACCTGTGGCCCCTC TTCGACCAGGCCTACGAGAAGGTCATGGGGTATCCCGCCAGCAAGTTCAACTTCACCGAGGGTGTGACCCCTCTG TCCACCTTGAAGGAGACTACAATGATGCTTGTCACCTACTACGTTCTCATCTTCGGTGGCCGCGAGGTGATGAAG AAGTTGCCTGCGTTCAAGCTTAACACCTTGTTCATGATCCACAACCTCCTTTTGACCACCGTTAGCGCTATCCTG CTGGCCTTGTTCATTGAGCAGCTTCTTCCCACTCTCTGGAGACACGGAGTCTTCTACACTATCTGTGACCAGCAG GGTGGTTGGACTCGCCCTCTGATCATTCTGTACTACCTCAACTACATCAACAAATACGTCGAGTTCATTGATACT ATCTTCCTTGTCCTCAAGAAGAAGCCATTGACCTTCCTCCACACCTACCACCACGGTGCCACCGCCCTCCTCTGC TACACTCAGCTTATCGGTGTGACTGCCGTGCAGTGGGTGCCTATCACCATCAACCTGCTTGTCCATGTCGTGATG TACTGGTACTACTTTCAGAGTGCCCGTGGTGTTCGCATTTGGTGGAAGAAGTATATCACTATGCTGCAGATCCTC CAGTTCGTCATTGACGTCGGCTTCATTTACTTCGCCTCGTACACCTACTTCACCTCTGCCTACTTCCCGTGGCTT CCCAACATGGGCAAGTGTGCCGGTGAGGAATTCGCTGCCTTGGCTGGTATCGGCATCATCAGCTCCTACTTGGTC CTGTTCATCTCCTTCTACATTGCCACCTACAATAAGACCGCCAAGACTGGACGTCCCCGCCGCAACACTGGCCAA AAATCGTTGATCGACATGAGGAACTTTGAAATTCCTTCCCCGGCCGGTACCAAGAGCGCCAAGTCCACTGGCCGC TCCAACGGCCCTGTGACACGCTCTCGCAAGGCCTAA |
| Gene | >Pro_DTO377G3_2|g5471.t1 ATGGCTTCCGAAATCCTTAAATATGTCGATGTCCCGACTCTCGATCGACCCTTTGGTGTGCACCTGTGGCCCCTC TTCGACCAGGCCTACGAGAAGGTCATGGGGTATCCCGCCAGCAAGTTCAACTTCACCGAGGGTGTGACCCCTCTG TCCACCTTGAAGGAGACTACAATGATGCTTGTCACCTACTACGTTCTCATCTTCGGTGGCCGCGAGGTGATGAAG AAGTTGCCTGCGTTCAAGCTTAACACCTTGTTCATGATCCACAACCTCCTTTTGACCACCGTTAGCGCTATCCTG CTGGCCTTGTTCATTGAGCAGCTTCTTCCCACTCTCTGGAGACACGGAGTCTTCTACACTATCTGTGACCAGCAG GGTGGTTGGACTCGCCCTCTGATCATTCTGTACTACGTAAGTTGCGAAGCGCTTGAACCGGGAGAAAAGAAACTC ACAACTTTGATTAGCTCAACTACATCAACAAATACGTCGAGTTCATTGATACTATCTTCCTTGTCCTCAAGAAGA AGCCATTGACCTTCCTCCACACCTACCACCACGGTGCCACCGCCCTCCTCTGCTACACTCAGCTTATCGGTGTGA CTGCCGTGCAGTGGGTGCCTATCACCATCAACCTGCTTGTCCATGTCGTGATGTACTGGTACTACTTTCAGAGTG CCCGTGGTGTTCGCATTTGGTGGAAGAAGTATATCACTATGCTGCAGATCCTCCAGTTCGTCATTGACGTCGGTA AGTCATTGCAGGCCCGGAACCTGCAAATAACAGAATACTGACAGTTTCAGGCTTCATTTACTTCGCCTCGTACAC CTACTTCACCTCTGCCTACTTCCCGTGGCTTCCCAACATGGGCAAGTGTGCCGGTGAGGAATTCGCTGCCTTGGC TGGTATCGGCATCATCAGCTCCTACTTGGTCCTGTTCATCTCCTTCTACATTGCCACCTACAATAAGACCGCCAA GACTGGACGTCCCCGCCGCAACACTGGCCAAAAATCGTTGATCGACATGAGGAACTTTGAAATTCCTTCCCCGGC CGGTACCAAGAGCGCCAAGTCCACTGGCCGCTCCAACGGCCCTGTGACACGCTCTCGCAAGGCCTAA |