Protein ID | Pro_DTO377G3_2|g5468.t1 |
Gene name | |
Location | scaffold_13:198478..201168 |
Strand | - |
Gene length (bp) | 2690 |
Transcript length (bp) | 2628 |
Coding sequence length (bp) | 2628 |
Protein length (aa) | 876 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF17681 | GCP_N_terminal | Gamma tubulin complex component N-terminal | 1.8E-35 | 236 | 517 |
PF04130 | GCP_C_terminal | Gamma tubulin complex component C-terminal | 1.0E-21 | 609 | 852 |
GO Term | Description | Terminal node |
---|---|---|
GO:0043015 | gamma-tubulin binding | Yes |
GO:0005515 | protein binding | No |
GO:0008092 | cytoskeletal protein binding | No |
GO:0005488 | binding | No |
GO:0015631 | tubulin binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 14 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 35.71 | 21.70 | 49.72 |
5d_25C | Five days - 25 degrees Celsius | 31.38 | 18.95 | 43.81 |
7d_25C | Seven days - 25 degrees Celsius | 29.02 | 17.32 | 40.73 |
10d_25C | Ten days - 25 degrees Celsius | 31.14 | 18.72 | 43.57 |
7d_15C | Seven days - 15 degrees Celsius | 43.51 | 25.81 | 61.21 |
7d_30C | Seven days - 30 degrees Celsius | 25.83 | 15.23 | 36.43 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.640604 | no |
3d_25C | 7d_25C | 0.411957 | no |
3d_25C | 7d_15C | 0.441793 | no |
3d_25C | 7d_30C | 0.153031 | no |
3d_25C | 10d_25C | 0.621837 | no |
5d_25C | 7d_25C | 0.800616 | no |
5d_25C | 7d_15C | 0.150713 | no |
5d_25C | 7d_30C | 0.442143 | no |
5d_25C | 10d_25C | 0.984308 | no |
7d_25C | 7d_15C | 0.067273 | no |
7d_25C | 7d_30C | 0.687849 | no |
7d_25C | 10d_25C | 0.826229 | no |
7d_15C | 7d_30C | 0.014096 | yes |
7d_15C | 10d_25C | 0.148853 | no |
7d_30C | 10d_25C | 0.473609 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5468.t1 MALAADLSTLIDALITSVAKISPNHKGSARVQSLKRRVQGALRTGSHTRTDQFAVAKQLEGLQEKFQILNRDELA EALHARLAELESDRMPWLPEILSLLLQLSDRPALLSTVKRPKERAKAPEAKETLSWSDLDAAGTAFSDEEIWEQV DFAGDSSDDDFSSVASDVSLPKDRPQSATTVDEGYIIPDDVFVSEEDGDLVASIEKAQFWRAENHHSLPQAEATT SRLITESQLARETIFMLQGLPTSIYVRLDDDFGVDRRYTLAHSSNEALASLLQCFIEIGAKLNAVRYFTKLPQTI PYMQTFCRSLEERLLEFDRVLSQVQCKYLSPGSTVSLIQLLVDVRQHSHELALLADMIANLERNSNDQPMCCLDS LYNLVCMLEALGDESSSQRLAELFFMCFKTYSSSIRLWMETGQVDASDSTFFVRTNRENGDLRTLWHDWFVLDTG HRQQRIPQFLEAGVQKVFTAGKSMVFLRHLNALPDIEAMKFEDFYCQDSSLLLPFPALVESAFEKLVDVDHSLSA SLLRTELDQQCGLWTSLDALQHVYLAKDMSAISIVDAKIFELIDRGRSWDDRFLLTEISRTAFSSISVIDVSRLL VRPASTSLRVSQNDHRTVGILEAISIDYGLPWPIANIITEDAIQAYQRISTFLMQIRRAKYAIVKQRIRDARIIA PDEKDTLVHALHHNMLWVLDLIYGHLTYLVITTTTQSLHKDLSGAQDVDAMIAAHQSYMSSLEAQCLLSEDLSHI HDAIIHFLDLCVHFADLQTAHLLGDEDQYLENPKALRTKKKPEEEFESDDDEDDDDNEAYDHEHTLTVSFRDSTY SQQLKTVNYQFNHLTTFVTDGLKSLVRADGLQSWDILADRLEWRRNWRRL* |
Coding | >Pro_DTO377G3_2|g5468.t1 ATGGCTCTAGCGGCTGATCTGAGTACGCTTATCGACGCCTTAATCACTTCTGTCGCTAAGATATCACCAAACCAC AAGGGGTCTGCACGTGTCCAGAGTCTGAAGCGCCGTGTACAAGGAGCGCTCCGAACTGGTTCTCATACGCGCACC GACCAGTTTGCAGTCGCCAAGCAACTCGAGGGACTACAGGAAAAGTTTCAAATCTTGAATAGAGATGAACTTGCT GAAGCTCTTCACGCCCGCCTTGCGGAGCTGGAGAGCGACCGGATGCCCTGGCTTCCAGAGATTCTGAGTCTCTTA TTGCAACTCTCAGATCGCCCCGCTCTTTTGTCAACGGTCAAACGTCCGAAGGAACGGGCCAAGGCACCAGAAGCA AAAGAGACTCTTTCTTGGTCGGACCTTGATGCAGCTGGGACGGCATTCAGCGACGAAGAAATTTGGGAACAAGTA GACTTTGCTGGCGACTCATCAGATGACGACTTTTCATCCGTTGCCAGTGATGTATCTCTTCCCAAGGACAGACCT CAATCCGCCACAACAGTGGATGAAGGGTATATCATTCCAGATGACGTTTTTGTTTCGGAAGAGGATGGCGATCTT GTTGCCTCTATAGAAAAGGCCCAATTTTGGAGAGCCGAGAATCACCATTCGTTGCCCCAAGCAGAAGCAACCACC TCGCGACTTATCACAGAATCCCAGCTTGCTAGGGAGACAATCTTCATGCTTCAGGGCCTTCCCACGTCTATTTAC GTGCGCTTGGACGATGATTTTGGAGTGGATCGAAGATACACACTCGCACATTCATCCAACGAAGCCCTGGCATCG CTTTTGCAGTGTTTCATTGAGATAGGCGCCAAGCTCAACGCTGTACGGTATTTCACCAAGCTTCCACAGACCATC CCATATATGCAAACGTTTTGCCGGAGCTTAGAAGAGCGTCTCCTTGAATTTGATAGAGTCTTATCTCAAGTTCAG TGCAAATACCTTTCACCCGGTTCAACTGTCAGTCTCATCCAGCTTCTTGTTGATGTTCGTCAGCACTCTCATGAG CTAGCATTGCTCGCAGACATGATCGCCAATTTAGAAAGAAACTCAAATGATCAACCAATGTGCTGCCTTGATTCC TTATACAACTTAGTATGCATGCTGGAAGCCCTTGGCGACGAAAGTTCGTCTCAGCGCCTGGCGGAGCTATTTTTT ATGTGTTTCAAAACATATTCAAGCTCGATCCGACTCTGGATGGAAACAGGTCAGGTCGATGCTTCGGACAGCACT TTCTTCGTGCGAACAAATCGTGAGAATGGGGATCTGCGGACTCTTTGGCATGACTGGTTTGTGCTTGATACGGGC CACAGGCAGCAGAGGATCCCCCAGTTTCTCGAGGCCGGTGTGCAGAAAGTCTTCACTGCAGGAAAGAGCATGGTA TTTCTCCGCCATCTAAATGCGCTACCAGACATTGAAGCCATGAAATTTGAGGACTTCTATTGCCAGGATTCTTCA TTATTACTTCCTTTCCCCGCATTAGTAGAGTCTGCTTTTGAAAAACTCGTGGATGTGGACCATTCACTCAGTGCT AGCTTATTACGAACTGAACTCGACCAACAATGCGGACTATGGACCTCCCTTGATGCTCTTCAACATGTCTACCTT GCCAAAGACATGAGCGCCATCAGCATTGTTGACGCAAAAATCTTTGAGTTGATCGATCGGGGTCGTTCCTGGGAC GACAGATTCCTGCTCACTGAGATATCAAGGACAGCTTTCAGTTCAATATCCGTCATTGACGTATCAAGACTCCTT GTGCGGCCTGCTAGTACTTCATTGCGAGTTTCTCAAAATGATCATCGGACCGTGGGAATTCTAGAAGCAATCTCA ATTGATTATGGCCTCCCGTGGCCTATTGCGAACATAATCACCGAGGACGCAATACAGGCATACCAACGAATCTCG ACCTTCCTGATGCAGATCAGGCGCGCTAAATATGCCATTGTGAAACAGCGTATTCGCGACGCCCGTATCATCGCA CCTGACGAAAAGGACACATTGGTACACGCTCTACATCATAACATGCTCTGGGTCCTCGATCTCATCTACGGCCAT CTGACCTATCTCGTAATAACCACCACAACCCAATCTCTACACAAAGATCTATCTGGCGCACAAGATGTCGATGCC ATGATAGCTGCCCACCAATCCTACATGTCCTCTTTGGAAGCCCAGTGTCTTCTTTCTGAAGATTTATCACATATC CACGATGCAATCATCCATTTCTTAGATCTGTGTGTTCATTTCGCAGATCTACAAACCGCGCACTTGCTCGGCGAT GAAGACCAATATCTGGAGAATCCGAAGGCGCTGCGCACAAAGAAAAAACCCGAAGAAGAATTCGAGTCTGATGAT GATGAAGATGATGATGATAACGAGGCCTACGATCACGAACACACACTCACAGTCTCATTTCGTGACTCGACCTAT AGCCAGCAGCTGAAAACGGTCAATTACCAGTTCAACCATCTAACGACCTTTGTCACGGATGGCTTGAAAAGTTTA GTTCGTGCAGATGGGCTGCAAAGTTGGGATATTCTTGCCGACAGGCTCGAATGGCGGCGAAATTGGCGTAGGCTT TGA |
Transcript | >Pro_DTO377G3_2|g5468.t1 ATGGCTCTAGCGGCTGATCTGAGTACGCTTATCGACGCCTTAATCACTTCTGTCGCTAAGATATCACCAAACCAC AAGGGGTCTGCACGTGTCCAGAGTCTGAAGCGCCGTGTACAAGGAGCGCTCCGAACTGGTTCTCATACGCGCACC GACCAGTTTGCAGTCGCCAAGCAACTCGAGGGACTACAGGAAAAGTTTCAAATCTTGAATAGAGATGAACTTGCT GAAGCTCTTCACGCCCGCCTTGCGGAGCTGGAGAGCGACCGGATGCCCTGGCTTCCAGAGATTCTGAGTCTCTTA TTGCAACTCTCAGATCGCCCCGCTCTTTTGTCAACGGTCAAACGTCCGAAGGAACGGGCCAAGGCACCAGAAGCA AAAGAGACTCTTTCTTGGTCGGACCTTGATGCAGCTGGGACGGCATTCAGCGACGAAGAAATTTGGGAACAAGTA GACTTTGCTGGCGACTCATCAGATGACGACTTTTCATCCGTTGCCAGTGATGTATCTCTTCCCAAGGACAGACCT CAATCCGCCACAACAGTGGATGAAGGGTATATCATTCCAGATGACGTTTTTGTTTCGGAAGAGGATGGCGATCTT GTTGCCTCTATAGAAAAGGCCCAATTTTGGAGAGCCGAGAATCACCATTCGTTGCCCCAAGCAGAAGCAACCACC TCGCGACTTATCACAGAATCCCAGCTTGCTAGGGAGACAATCTTCATGCTTCAGGGCCTTCCCACGTCTATTTAC GTGCGCTTGGACGATGATTTTGGAGTGGATCGAAGATACACACTCGCACATTCATCCAACGAAGCCCTGGCATCG CTTTTGCAGTGTTTCATTGAGATAGGCGCCAAGCTCAACGCTGTACGGTATTTCACCAAGCTTCCACAGACCATC CCATATATGCAAACGTTTTGCCGGAGCTTAGAAGAGCGTCTCCTTGAATTTGATAGAGTCTTATCTCAAGTTCAG TGCAAATACCTTTCACCCGGTTCAACTGTCAGTCTCATCCAGCTTCTTGTTGATGTTCGTCAGCACTCTCATGAG CTAGCATTGCTCGCAGACATGATCGCCAATTTAGAAAGAAACTCAAATGATCAACCAATGTGCTGCCTTGATTCC TTATACAACTTAGTATGCATGCTGGAAGCCCTTGGCGACGAAAGTTCGTCTCAGCGCCTGGCGGAGCTATTTTTT ATGTGTTTCAAAACATATTCAAGCTCGATCCGACTCTGGATGGAAACAGGTCAGGTCGATGCTTCGGACAGCACT TTCTTCGTGCGAACAAATCGTGAGAATGGGGATCTGCGGACTCTTTGGCATGACTGGTTTGTGCTTGATACGGGC CACAGGCAGCAGAGGATCCCCCAGTTTCTCGAGGCCGGTGTGCAGAAAGTCTTCACTGCAGGAAAGAGCATGGTA TTTCTCCGCCATCTAAATGCGCTACCAGACATTGAAGCCATGAAATTTGAGGACTTCTATTGCCAGGATTCTTCA TTATTACTTCCTTTCCCCGCATTAGTAGAGTCTGCTTTTGAAAAACTCGTGGATGTGGACCATTCACTCAGTGCT AGCTTATTACGAACTGAACTCGACCAACAATGCGGACTATGGACCTCCCTTGATGCTCTTCAACATGTCTACCTT GCCAAAGACATGAGCGCCATCAGCATTGTTGACGCAAAAATCTTTGAGTTGATCGATCGGGGTCGTTCCTGGGAC GACAGATTCCTGCTCACTGAGATATCAAGGACAGCTTTCAGTTCAATATCCGTCATTGACGTATCAAGACTCCTT GTGCGGCCTGCTAGTACTTCATTGCGAGTTTCTCAAAATGATCATCGGACCGTGGGAATTCTAGAAGCAATCTCA ATTGATTATGGCCTCCCGTGGCCTATTGCGAACATAATCACCGAGGACGCAATACAGGCATACCAACGAATCTCG ACCTTCCTGATGCAGATCAGGCGCGCTAAATATGCCATTGTGAAACAGCGTATTCGCGACGCCCGTATCATCGCA CCTGACGAAAAGGACACATTGGTACACGCTCTACATCATAACATGCTCTGGGTCCTCGATCTCATCTACGGCCAT CTGACCTATCTCGTAATAACCACCACAACCCAATCTCTACACAAAGATCTATCTGGCGCACAAGATGTCGATGCC ATGATAGCTGCCCACCAATCCTACATGTCCTCTTTGGAAGCCCAGTGTCTTCTTTCTGAAGATTTATCACATATC CACGATGCAATCATCCATTTCTTAGATCTGTGTGTTCATTTCGCAGATCTACAAACCGCGCACTTGCTCGGCGAT GAAGACCAATATCTGGAGAATCCGAAGGCGCTGCGCACAAAGAAAAAACCCGAAGAAGAATTCGAGTCTGATGAT GATGAAGATGATGATGATAACGAGGCCTACGATCACGAACACACACTCACAGTCTCATTTCGTGACTCGACCTAT AGCCAGCAGCTGAAAACGGTCAATTACCAGTTCAACCATCTAACGACCTTTGTCACGGATGGCTTGAAAAGTTTA GTTCGTGCAGATGGGCTGCAAAGTTGGGATATTCTTGCCGACAGGCTCGAATGGCGGCGAAATTGGCGTAGGCTT TGA |
Gene | >Pro_DTO377G3_2|g5468.t1 ATGGCTCTAGCGGCTGATCTGAGTACGCTTATCGACGCCTTAATCACTTCTGTCGCTAAGATATCACCAAACCAC AAGGTAATATATTGAATTTCCATCAATCTCATATCGTCACACCCGGTGTACTCATATCTAAGTAGGGGTCTGCAC GTGTCCAGAGTCTGAAGCGCCGTGTACAAGGAGCGCTCCGAACTGGTTCTCATACGCGCACCGACCAGTTTGCAG TCGCCAAGCAACTCGAGGGACTACAGGAAAAGTTTCAAATCTTGAATAGAGATGAACTTGCTGAAGCTCTTCACG CCCGCCTTGCGGAGCTGGAGAGCGACCGGATGCCCTGGCTTCCAGAGATTCTGAGTCTCTTATTGCAACTCTCAG ATCGCCCCGCTCTTTTGTCAACGGTCAAACGTCCGAAGGAACGGGCCAAGGCACCAGAAGCAAAAGAGACTCTTT CTTGGTCGGACCTTGATGCAGCTGGGACGGCATTCAGCGACGAAGAAATTTGGGAACAAGTAGACTTTGCTGGCG ACTCATCAGATGACGACTTTTCATCCGTTGCCAGTGATGTATCTCTTCCCAAGGACAGACCTCAATCCGCCACAA CAGTGGATGAAGGGTATATCATTCCAGATGACGTTTTTGTTTCGGAAGAGGATGGCGATCTTGTTGCCTCTATAG AAAAGGCCCAATTTTGGAGAGCCGAGAATCACCATTCGTTGCCCCAAGCAGAAGCAACCACCTCGCGACTTATCA CAGAATCCCAGCTTGCTAGGGAGACAATCTTCATGCTTCAGGGCCTTCCCACGTCTATTTACGTGCGCTTGGACG ATGATTTTGGAGTGGATCGAAGATACACACTCGCACATTCATCCAACGAAGCCCTGGCATCGCTTTTGCAGTGTT TCATTGAGATAGGCGCCAAGCTCAACGCTGTACGGTATTTCACCAAGCTTCCACAGACCATCCCATATATGCAAA CGTTTTGCCGGAGCTTAGAAGAGCGTCTCCTTGAATTTGATAGAGTCTTATCTCAAGTTCAGTGCAAATACCTTT CACCCGGTTCAACTGTCAGTCTCATCCAGCTTCTTGTTGATGTTCGTCAGCACTCTCATGAGCTAGCATTGCTCG CAGACATGATCGCCAATTTAGAAAGAAACTCAAATGATCAACCAATGTGCTGCCTTGATTCCTTATACAACTTAG TATGCATGCTGGAAGCCCTTGGCGACGAAAGTTCGTCTCAGCGCCTGGCGGAGCTATTTTTTATGTGTTTCAAAA CATATTCAAGCTCGATCCGACTCTGGATGGAAACAGGTCAGGTCGATGCTTCGGACAGCACTTTCTTCGTGCGAA CAAATCGTGAGAATGGGGATCTGCGGACTCTTTGGCATGACTGGTTTGTGCTTGATACGGGCCACAGGCAGCAGA GGATCCCCCAGTTTCTCGAGGCCGGTGTGCAGAAAGTCTTCACTGCAGGAAAGAGCATGGTATTTCTCCGCCATC TAAATGCGCTACCAGACATTGAAGCCATGAAATTTGAGGACTTCTATTGCCAGGATTCTTCATTATTACTTCCTT TCCCCGCATTAGTAGAGTCTGCTTTTGAAAAACTCGTGGATGTGGACCATTCACTCAGTGCTAGCTTATTACGAA CTGAACTCGACCAACAATGCGGACTATGGACCTCCCTTGATGCTCTTCAACATGTCTACCTTGCCAAAGACATGA GCGCCATCAGCATTGTTGACGCAAAAATCTTTGAGTTGATCGATCGGGGTCGTTCCTGGGACGACAGATTCCTGC TCACTGAGATATCAAGGACAGCTTTCAGTTCAATATCCGTCATTGACGTATCAAGACTCCTTGTGCGGCCTGCTA GTACTTCATTGCGAGTTTCTCAAAATGATCATCGGACCGTGGGAATTCTAGAAGCAATCTCAATTGATTATGGCC TCCCGTGGCCTATTGCGAACATAATCACCGAGGACGCAATACAGGCATACCAACGAATCTCGACCTTCCTGATGC AGATCAGGCGCGCTAAATATGCCATTGTGAAACAGCGTATTCGCGACGCCCGTATCATCGCACCTGACGAAAAGG ACACATTGGTACACGCTCTACATCATAACATGCTCTGGGTCCTCGATCTCATCTACGGCCATCTGACCTATCTCG TAATAACCACCACAACCCAATCTCTACACAAAGATCTATCTGGCGCACAAGATGTCGATGCCATGATAGCTGCCC ACCAATCCTACATGTCCTCTTTGGAAGCCCAGTGTCTTCTTTCTGAAGATTTATCACATATCCACGATGCAATCA TCCATTTCTTAGATCTGTGTGTTCATTTCGCAGATCTACAAACCGCGCACTTGCTCGGCGATGAAGACCAATATC TGGAGAATCCGAAGGCGCTGCGCACAAAGAAAAAACCCGAAGAAGAATTCGAGTCTGATGATGATGAAGATGATG ATGATAACGAGGCCTACGATCACGAACACACACTCACAGTCTCATTTCGTGACTCGACCTATAGCCAGCAGCTGA AAACGGTCAATTACCAGTTCAACCATCTAACGACCTTTGTCACGGATGGCTTGAAAAGTTTAGTTCGTGCAGATG GGCTGCAAAGTTGGGATATTCTTGCCGACAGGCTCGAATGGCGGCGAAATTGGCGTAGGCTTTGA |