© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5463.t1 |
| Gene name | |
| Location | scaffold_13:183935..185567 |
| Strand | - |
| Gene length (bp) | 1632 |
| Transcript length (bp) | 1521 |
| Coding sequence length (bp) | 1521 |
| Protein length (aa) | 507 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02096 | 60KD_IMP | 60Kd inner membrane protein | 1.1E-22 | 141 | 335 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0032977 | membrane insertase activity | Yes |
| GO:0140104 | molecular carrier activity | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0140597 | protein carrier chaperone | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 135 | 157 | 22 |
| 2 | 296 | 318 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 46.88 | 27.72 | 66.03 |
| 5d_25C | Five days - 25 degrees Celsius | 30.82 | 17.34 | 44.30 |
| 7d_25C | Seven days - 25 degrees Celsius | 26.48 | 14.22 | 38.75 |
| 10d_25C | Ten days - 25 degrees Celsius | 19.77 | 10.10 | 29.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 26.12 | 14.10 | 38.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 28.26 | 15.67 | 40.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.069866 | no |
| 3d_25C | 7d_25C | 0.013513 | yes |
| 3d_25C | 7d_15C | 0.011388 | yes |
| 3d_25C | 7d_30C | 0.029538 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.633673 | no |
| 5d_25C | 7d_15C | 0.592611 | no |
| 5d_25C | 7d_30C | 0.802023 | no |
| 5d_25C | 10d_25C | 0.078462 | no |
| 7d_25C | 7d_15C | 0.974984 | no |
| 7d_25C | 7d_30C | 0.861822 | no |
| 7d_25C | 10d_25C | 0.307301 | no |
| 7d_15C | 7d_30C | 0.825520 | no |
| 7d_15C | 10d_25C | 0.333672 | no |
| 7d_30C | 10d_25C | 0.182104 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5463.t1 MMGSVGLKGSGAAAALARQRMTAMSRSSRSMSTLRSQSLRFPSQRSQLKSALSGSAPWRMTPAVVGPAAIRFNST SSTHPDVLPEYAIDGSLKNTVDMTEITAIPETIGYLKELGLDFGWGFTTTMQWLIEHTHIWTGLPWWASIVAVGI LTRVAMLKAVIGASENSTRMTNAKPETEPLRKRMFTATTDGNQQEAQILRAQINEINQKHGIVTWKSFIPMLQIP LGFGCFRVVRAMTTLPVPALAAEQVGWLKDLTVADPTYILPMMAAGTLCLSLRRGGESGAMPMMQTEAGKYIVYG FPVMSFAFMAFMPSALQLYFVASGIFGLGQTYLINSEAFRKWMHLSIARRPSNGPKYSAVTQNTESKPLRRLLER LEKEKAAQEKAQEKARSELAASPEQGGKISLIDRIYNKFGKVGTNFSKSVSESIGTSTVEQRLAKDKKKRADEYE QQRKDEDELMRKERNELRRKEHMQTLENERAKASKSLKNSQTAARKPNGRRGSRRA* |
| Coding | >Pro_DTO377G3_2|g5463.t1 ATGATGGGATCTGTTGGCCTGAAAGGGTCCGGCGCAGCCGCTGCCCTTGCCCGTCAGAGAATGACCGCCATGTCC CGCTCCTCTAGATCTATGTCTACCTTGCGGTCACAAAGCCTGCGGTTCCCTAGCCAGCGGAGCCAATTGAAATCA GCACTATCCGGCAGTGCTCCCTGGCGCATGACACCAGCTGTTGTCGGCCCGGCCGCAATCCGATTCAATTCCACC TCCTCTACCCACCCCGACGTACTCCCTGAATATGCTATAGACGGCTCATTGAAAAATACGGTAGACATGACTGAG ATTACCGCGATCCCGGAGACCATTGGATATCTCAAGGAGCTTGGGCTGGACTTCGGCTGGGGCTTCACGACGACA ATGCAATGGCTTATCGAGCACACTCACATATGGACCGGCTTGCCATGGTGGGCTAGTATCGTGGCCGTCGGTATT TTGACTCGTGTGGCAATGCTGAAGGCTGTCATTGGCGCCTCCGAGAATTCTACAAGAATGACCAACGCCAAACCG GAGACTGAGCCCCTCCGGAAAAGGATGTTTACTGCCACGACCGATGGGAACCAGCAGGAAGCCCAGATTTTGAGG GCCCAGATCAACGAGATCAACCAGAAGCACGGCATTGTCACATGGAAGTCATTTATTCCCATGTTGCAAATTCCA CTTGGTTTCGGATGTTTCCGAGTCGTGCGAGCAATGACTACGTTGCCAGTGCCGGCCCTAGCCGCGGAACAAGTG GGATGGCTTAAGGATCTGACTGTTGCTGATCCTACGTACATCTTGCCTATGATGGCTGCAGGCACGCTGTGTCTG TCTCTGAGGAGAGGTGGTGAATCCGGCGCTATGCCCATGATGCAAACTGAAGCAGGAAAGTACATCGTGTATGGT TTCCCTGTCATGTCTTTTGCCTTCATGGCGTTCATGCCGAGTGCCCTGCAGCTCTACTTTGTGGCAAGTGGTATT TTCGGCCTAGGTCAAACTTATTTGATCAACTCGGAGGCCTTCCGGAAGTGGATGCACCTGTCGATCGCCCGGAGA CCATCCAATGGACCGAAGTACTCGGCAGTTACCCAAAACACCGAAAGCAAGCCCCTTCGCAGGCTGCTGGAACGG CTTGAGAAGGAAAAAGCCGCGCAAGAGAAAGCACAAGAGAAAGCACGCAGCGAACTAGCTGCCTCCCCGGAACAA GGTGGGAAAATCAGCTTGATTGACCGCATCTACAACAAATTCGGCAAAGTCGGCACCAACTTCTCAAAGTCTGTC TCAGAAAGCATTGGCACTTCAACGGTGGAGCAACGTCTCGCCAAGGACAAGAAGAAGCGCGCTGATGAATACGAA CAACAGCGAAAAGACGAGGATGAGCTCATGCGGAAGGAGCGTAACGAACTCCGCCGCAAGGAGCACATGCAAACC CTAGAGAACGAACGGGCCAAGGCAAGCAAGTCCTTGAAGAATAGCCAGACGGCAGCTCGCAAACCCAACGGGCGG CGTGGCTCTCGCCGTGCTTGA |
| Transcript | >Pro_DTO377G3_2|g5463.t1 ATGATGGGATCTGTTGGCCTGAAAGGGTCCGGCGCAGCCGCTGCCCTTGCCCGTCAGAGAATGACCGCCATGTCC CGCTCCTCTAGATCTATGTCTACCTTGCGGTCACAAAGCCTGCGGTTCCCTAGCCAGCGGAGCCAATTGAAATCA GCACTATCCGGCAGTGCTCCCTGGCGCATGACACCAGCTGTTGTCGGCCCGGCCGCAATCCGATTCAATTCCACC TCCTCTACCCACCCCGACGTACTCCCTGAATATGCTATAGACGGCTCATTGAAAAATACGGTAGACATGACTGAG ATTACCGCGATCCCGGAGACCATTGGATATCTCAAGGAGCTTGGGCTGGACTTCGGCTGGGGCTTCACGACGACA ATGCAATGGCTTATCGAGCACACTCACATATGGACCGGCTTGCCATGGTGGGCTAGTATCGTGGCCGTCGGTATT TTGACTCGTGTGGCAATGCTGAAGGCTGTCATTGGCGCCTCCGAGAATTCTACAAGAATGACCAACGCCAAACCG GAGACTGAGCCCCTCCGGAAAAGGATGTTTACTGCCACGACCGATGGGAACCAGCAGGAAGCCCAGATTTTGAGG GCCCAGATCAACGAGATCAACCAGAAGCACGGCATTGTCACATGGAAGTCATTTATTCCCATGTTGCAAATTCCA CTTGGTTTCGGATGTTTCCGAGTCGTGCGAGCAATGACTACGTTGCCAGTGCCGGCCCTAGCCGCGGAACAAGTG GGATGGCTTAAGGATCTGACTGTTGCTGATCCTACGTACATCTTGCCTATGATGGCTGCAGGCACGCTGTGTCTG TCTCTGAGGAGAGGTGGTGAATCCGGCGCTATGCCCATGATGCAAACTGAAGCAGGAAAGTACATCGTGTATGGT TTCCCTGTCATGTCTTTTGCCTTCATGGCGTTCATGCCGAGTGCCCTGCAGCTCTACTTTGTGGCAAGTGGTATT TTCGGCCTAGGTCAAACTTATTTGATCAACTCGGAGGCCTTCCGGAAGTGGATGCACCTGTCGATCGCCCGGAGA CCATCCAATGGACCGAAGTACTCGGCAGTTACCCAAAACACCGAAAGCAAGCCCCTTCGCAGGCTGCTGGAACGG CTTGAGAAGGAAAAAGCCGCGCAAGAGAAAGCACAAGAGAAAGCACGCAGCGAACTAGCTGCCTCCCCGGAACAA GGTGGGAAAATCAGCTTGATTGACCGCATCTACAACAAATTCGGCAAAGTCGGCACCAACTTCTCAAAGTCTGTC TCAGAAAGCATTGGCACTTCAACGGTGGAGCAACGTCTCGCCAAGGACAAGAAGAAGCGCGCTGATGAATACGAA CAACAGCGAAAAGACGAGGATGAGCTCATGCGGAAGGAGCGTAACGAACTCCGCCGCAAGGAGCACATGCAAACC CTAGAGAACGAACGGGCCAAGGCAAGCAAGTCCTTGAAGAATAGCCAGACGGCAGCTCGCAAACCCAACGGGCGG CGTGGCTCTCGCCGTGCTTGA |
| Gene | >Pro_DTO377G3_2|g5463.t1 ATGATGGGATCTGTTGGCCTGAAAGGGTCCGGCGCAGCCGCTGCCCTTGCCCGTCAGAGAATGACCGCCATGTCC CGCTCCTCTAGATCTGTCTGTTCTCCCGTTGACTCGGATTTGCAAAAACATCGAAATTGACTTGGCTTTGCAGAT GTCTACCTTGCGGTCACAAAGCCTGCGGTTCCCTAGCCAGCGGAGCCAATTGAAATCAGCACTATCCGGCAGTGC TCCCTGGCGCATGACACCAGCTGTTGTCGGCCCGGCCGCAATCCGATTCAATTCCACCTCCTCTACCCACCCCGA CGTACTCCCTGAATATGCTATAGACGGCTCATTGAAAAATACGGTAGACATGACTGAGATTACCGCGATCCCGGA GACCATTGGATATCTCAAGGAGCTTGGGCTGGACTTCGGCTGGGGCTTCACGACGACAATGCAATGGCTTATCGA GCACACTCACATATGGACCGGCTTGCCATGGTGGGCTAGTATCGTGGCCGTCGGTATTTTGACTCGTGTGGCAAT GCTGAAGGCTGTCATTGGCGCCTCCGAGAATTCTACAAGAATGACCAACGCCAAACCGGAGACTGAGCCCCTCCG GAAAAGGATGTTTACTGCCACGACCGATGGGAACCAGCAGGAAGCCCAGATTTTGAGGGCCCAGATCAACGAGAT CAACCAGAAGCACGGCATTGTCACATGGAAGTCATTTATTCCCATGTTGCAAATTCCACTTGGTTTCGGATGTTT CCGAGTCGTGCGAGCAATGACTACGTTGCCAGTGCCGGCCCTAGCCGCGGAACAAGTGGGATGGCTTAAGGATCT GACTGTTGCTGATCCTACGTACATCTTGCCTATGATGGCTGCAGGCACGCTGTGTCTGTCTCTGAGGGTAAGTTG GTCTCATATGGTCTACTATAACTGCGATACTAACCAAGATAACAGAGAGGTGGTGAATCCGGCGCTATGCCCATG ATGCAAACTGAAGCAGGAAAGTACATCGTGTATGGTTTCCCTGTCATGTCTTTTGCCTTCATGGCGTTCATGCCG AGTGCCCTGCAGCTCTACTTTGTGGCAAGTGGTATTTTCGGCCTAGGTCAAACTTATTTGATCAACTCGGAGGCC TTCCGGAAGTGGATGCACCTGTCGATCGCCCGGAGACCATCCAATGGACCGAAGTACTCGGCAGTTACCCAAAAC ACCGAAAGCAAGCCCCTTCGCAGGCTGCTGGAACGGCTTGAGAAGGAAAAAGCCGCGCAAGAGAAAGCACAAGAG AAAGCACGCAGCGAACTAGCTGCCTCCCCGGAACAAGGTGGGAAAATCAGCTTGATTGACCGCATCTACAACAAA TTCGGCAAAGTCGGCACCAACTTCTCAAAGTCTGTCTCAGAAAGCATTGGCACTTCAACGGTGGAGCAACGTCTC GCCAAGGACAAGAAGAAGCGCGCTGATGAATACGAACAACAGCGAAAAGACGAGGATGAGCTCATGCGGAAGGAG CGTAACGAACTCCGCCGCAAGGAGCACATGCAAACCCTAGAGAACGAACGGGCCAAGGCAAGCAAGTCCTTGAAG AATAGCCAGACGGCAGCTCGCAAACCCAACGGGCGGCGTGGCTCTCGCCGTGCTTGA |