© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5450.t1 |
| Gene name | |
| Location | scaffold_13:147835..148842 |
| Strand | + |
| Gene length (bp) | 1007 |
| Transcript length (bp) | 516 |
| Coding sequence length (bp) | 516 |
| Protein length (aa) | 172 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03134 | TB2_DP1_HVA22 | TB2/DP1, HVA22 family | 2.0E-27 | 69 | 144 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 37 | 68 | 31 |
| 2 | 88 | 110 | 22 |
| 3 | 115 | 137 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1204.56 | 714.46 | 1694.65 |
| 5d_25C | Five days - 25 degrees Celsius | 1066.81 | 634.78 | 1498.84 |
| 7d_25C | Seven days - 25 degrees Celsius | 976.49 | 582.26 | 1370.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 994.73 | 593.05 | 1396.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 1389.72 | 814.83 | 1964.61 |
| 7d_30C | Seven days - 30 degrees Celsius | 971.25 | 579.11 | 1363.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.675291 | no |
| 3d_25C | 7d_25C | 0.412034 | no |
| 3d_25C | 7d_15C | 0.613077 | no |
| 3d_25C | 7d_30C | 0.399120 | no |
| 3d_25C | 10d_25C | 0.464367 | no |
| 5d_25C | 7d_25C | 0.772615 | no |
| 5d_25C | 7d_15C | 0.276299 | no |
| 5d_25C | 7d_30C | 0.755433 | no |
| 5d_25C | 10d_25C | 0.826723 | no |
| 7d_25C | 7d_15C | 0.123322 | no |
| 7d_25C | 7d_30C | 0.988193 | no |
| 7d_25C | 10d_25C | 0.957688 | no |
| 7d_15C | 7d_30C | 0.110690 | no |
| 7d_15C | 10d_25C | 0.140796 | no |
| 7d_30C | 10d_25C | 0.947757 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5450.t1 MASFQERAQHSIAQLDKELSKYPVLANLERQTNVPKVYVILGLIGIYFFLVFFNIAGEFLVNFAGFLIPGYYSLN ALFTSSTQDDTQWLTYWVVFAFLTVIESAISAAYWFPFYYIFKFVLIMWMALPQTSGAQIVFNSFLQPVLGRFFS SNGTSSNLRAQAEAASKPHST* |
| Coding | >Pro_DTO377G3_2|g5450.t1 ATGGCCTCTTTCCAGGAACGTGCCCAGCACTCTATTGCTCAGCTCGACAAGGAGCTCTCCAAGTACCCTGTCCTT GCCAACCTTGAGCGTCAGACCAATGTCCCCAAGGTCTATGTTATCCTTGGCCTTATCGGAATCTACTTCTTCCTT GTCTTCTTTAACATTGCTGGCGAGTTCCTCGTCAACTTTGCCGGTTTCCTGATCCCCGGTTACTACTCCCTTAAC GCACTTTTCACCTCAAGCACTCAGGATGACACCCAGTGGCTCACGTACTGGGTTGTGTTTGCTTTCCTGACTGTC ATTGAGAGTGCCATCAGCGCTGCTTACTGGTTCCCCTTCTACTACATCTTCAAGTTCGTTCTGATCATGTGGATG GCCCTTCCCCAGACCAGCGGTGCCCAAATTGTCTTCAACTCCTTCCTCCAGCCCGTGCTTGGCCGTTTCTTCAGC TCCAACGGCACTTCCTCCAACCTGCGCGCTCAGGCCGAGGCTGCGAGCAAGCCCCACTCCACTTAA |
| Transcript | >Pro_DTO377G3_2|g5450.t1 ATGGCCTCTTTCCAGGAACGTGCCCAGCACTCTATTGCTCAGCTCGACAAGGAGCTCTCCAAGTACCCTGTCCTT GCCAACCTTGAGCGTCAGACCAATGTCCCCAAGGTCTATGTTATCCTTGGCCTTATCGGAATCTACTTCTTCCTT GTCTTCTTTAACATTGCTGGCGAGTTCCTCGTCAACTTTGCCGGTTTCCTGATCCCCGGTTACTACTCCCTTAAC GCACTTTTCACCTCAAGCACTCAGGATGACACCCAGTGGCTCACGTACTGGGTTGTGTTTGCTTTCCTGACTGTC ATTGAGAGTGCCATCAGCGCTGCTTACTGGTTCCCCTTCTACTACATCTTCAAGTTCGTTCTGATCATGTGGATG GCCCTTCCCCAGACCAGCGGTGCCCAAATTGTCTTCAACTCCTTCCTCCAGCCCGTGCTTGGCCGTTTCTTCAGC TCCAACGGCACTTCCTCCAACCTGCGCGCTCAGGCCGAGGCTGCGAGCAAGCCCCACTCCACTTAA |
| Gene | >Pro_DTO377G3_2|g5450.t1 ATGGCCTCTTTCCAGGAACGTGCCCAGCACTCTATTGCTCAGCTCGACAAGGAGGTACGTTTCCAGCCATTGTTG TGTGTTTCGCTGTCCTCCTAGGTCAAACCCTCGCCTGGTGGCTGCAATGCCCCTAAGCGGTAGTGACCACAGCAG GAGTATCTGCAATCACATCCTTTGATACATACTTCACTATAGTATCTATCGCTGTGGTTTTGAGCTAACATCTGC TATTTCGTAGCTCTCCAAGTACCCTGTCCTTGCCAACCTTGAGCGTCAGACCAATGTCCCCAAGGTCTATGTTAT CCTTGGCCTTATCGGAATCTACTTCTTCCTTGTCTTCTTTAACATTGCTGGCGAGTTCCTCGTCAACTTTGCCGG TTTCCTGATCCCCGGTTACTACTCCCTTAACGCACTTTTCACCTCAAGCACTCAGGATGACACCCAGGTGAGTTT TTTTTTTGTAAATTTCCCCCTTTACACACAAATTACTAACCTTGTCTTTTTTCGCTCCTCTAGTGGCTCACGGTA TGTTCACATGATTTTATCACCTGGTTGTTACAATCGTGCGGAAGTAATCACCGCCGATTGTTATCATACACCACC CACGTGACATATTTCCCGCTTGCACGCGATCAGTAATTCTAACATATGACTTGATAGTACTGGGTTGTGTTTGCT TTCCTGACTGTCATTGAGAGTGCCATCAGCGCTGCTTACTGGTTCCGTACGTGCCCACAATATGCCGATTTTCTG ACTATCTTGCTAACTGATCGCAGCCTTCTACTACATCTTCAAGTTCGTTCTGATCATGTGGATGGCCCTTCCCCA GACCAGGTATGTTACTATTCCATGACCAAGTTAAGACCAGTAGCTGATCTCTTTTAAGCGGTGCCCAAATTGTCT TCAACTCCTTCCTCCAGCCCGTGCTTGGCCGTTTCTTCAGCTCCAACGGCACTTCCTCCAACCTGCGCGCTCAGG CCGAGGCTGCGAGCAAGCCCCACTCCACTTAA |