© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5447.t1 |
| Gene name | |
| Location | scaffold_13:140716..142304 |
| Strand | - |
| Gene length (bp) | 1588 |
| Transcript length (bp) | 1287 |
| Coding sequence length (bp) | 1287 |
| Protein length (aa) | 429 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 9.9E-39 | 268 | 422 |
| PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 8.1E-33 | 48 | 157 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 2.2E-27 | 161 | 256 |
| PF08028 | Acyl-CoA_dh_2 | Acyl-CoA dehydrogenase, C-terminal domain | 1.5E-13 | 284 | 405 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| Orthofinder run ID | 2 |
| Orthogroup | 4256 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5447.t1 MASLTLPLLRTSTRAVRLTRIPALTPYFRSISTKHPTGFVPPSESDLLELRERVQDFTRREIPADVAARTDEQNE FPAEMWKKMGDAGFLGVTADEEYGGLGMGYQAHCVVMEEISRASGSIGLSYAAHSQLCVNQLSLNGSTEQKERIL PGLLSGEKVGALAMSEHSAGSDVVSMKTTAKEVDGGWLLNGTKMWITNGPDADYIVVYAKTAPELGSKGITAFIV EKTFKGFSCARKLDKLGMRGSNTGELIFEDVFVPRENVLGELNRGVRVLMEGLDLERLVLSAGPLGIMQAALDLV LPYTHVRKQFGAPIAHNQLVQGKLADMYTKLAASRAYTYVTARHVDNAAVEPSEMAVRTHDCAGAILYAAERATE CTLDAIQLMGGTGYINEIPAGRLLRDAKLYEIGAGTSEIRRMVIGRAFNKEYA* |
| Coding | >Pro_DTO377G3_2|g5447.t1 ATGGCGTCCCTAACCCTCCCTCTCCTTCGCACCTCAACACGCGCGGTACGGCTAACCCGCATCCCCGCACTTACC CCGTATTTCCGCTCTATCTCAACAAAACACCCCACGGGCTTTGTACCTCCGTCCGAGAGTGATCTCCTAGAGCTG CGGGAGCGCGTGCAAGATTTCACAAGGCGTGAGATCCCAGCCGATGTTGCTGCACGGACAGATGAACAGAATGAG TTCCCAGCGGAAATGTGGAAGAAGATGGGTGATGCTGGGTTCCTCGGTGTCACAGCGGACGAGGAGTACGGTGGC CTGGGTATGGGCTACCAGGCACACTGCGTGGTGATGGAGGAGATCAGTCGAGCATCCGGAAGCATCGGTCTCTCT TATGCCGCCCACTCCCAGCTCTGTGTGAACCAGCTCTCCCTCAATGGCTCGACGGAACAAAAAGAGCGCATTCTT CCCGGTCTCCTATCAGGCGAGAAGGTCGGTGCTCTTGCCATGTCGGAGCATTCAGCTGGCTCCGATGTAGTCAGC ATGAAGACCACGGCGAAGGAAGTTGATGGAGGCTGGCTCTTGAATGGAACTAAGATGTGGATTACGAACGGCCCC GATGCCGATTACATTGTCGTGTACGCTAAGACAGCGCCTGAACTAGGCTCCAAAGGTATCACAGCATTCATAGTT GAGAAGACCTTCAAGGGCTTCTCATGCGCACGCAAGCTAGACAAGTTGGGTATGCGTGGCTCTAACACAGGCGAA CTCATCTTTGAGGATGTTTTCGTTCCCCGGGAGAACGTCCTGGGTGAGTTAAATCGCGGTGTCCGCGTCTTGATG GAGGGTCTGGACTTGGAGCGACTCGTCCTGAGTGCAGGACCATTAGGAATCATGCAAGCTGCGCTTGACCTCGTC CTTCCTTACACACACGTGCGCAAGCAATTCGGTGCACCGATCGCCCACAACCAGCTGGTCCAGGGCAAGCTAGCG GACATGTACACTAAGCTGGCTGCCTCGCGTGCGTACACATATGTTACGGCACGGCATGTAGACAACGCCGCCGTG GAACCTAGCGAGATGGCCGTGCGCACTCATGACTGCGCCGGTGCAATCCTCTACGCCGCCGAACGTGCGACTGAA TGCACGCTCGATGCCATCCAACTCATGGGAGGAACCGGCTATATCAACGAGATTCCTGCTGGGCGCCTTCTCCGG GATGCGAAGCTGTATGAGATTGGCGCTGGTACAAGCGAGATCCGCAGAATGGTCATTGGCCGCGCATTCAACAAG GAGTATGCTTAA |
| Transcript | >Pro_DTO377G3_2|g5447.t1 ATGGCGTCCCTAACCCTCCCTCTCCTTCGCACCTCAACACGCGCGGTACGGCTAACCCGCATCCCCGCACTTACC CCGTATTTCCGCTCTATCTCAACAAAACACCCCACGGGCTTTGTACCTCCGTCCGAGAGTGATCTCCTAGAGCTG CGGGAGCGCGTGCAAGATTTCACAAGGCGTGAGATCCCAGCCGATGTTGCTGCACGGACAGATGAACAGAATGAG TTCCCAGCGGAAATGTGGAAGAAGATGGGTGATGCTGGGTTCCTCGGTGTCACAGCGGACGAGGAGTACGGTGGC CTGGGTATGGGCTACCAGGCACACTGCGTGGTGATGGAGGAGATCAGTCGAGCATCCGGAAGCATCGGTCTCTCT TATGCCGCCCACTCCCAGCTCTGTGTGAACCAGCTCTCCCTCAATGGCTCGACGGAACAAAAAGAGCGCATTCTT CCCGGTCTCCTATCAGGCGAGAAGGTCGGTGCTCTTGCCATGTCGGAGCATTCAGCTGGCTCCGATGTAGTCAGC ATGAAGACCACGGCGAAGGAAGTTGATGGAGGCTGGCTCTTGAATGGAACTAAGATGTGGATTACGAACGGCCCC GATGCCGATTACATTGTCGTGTACGCTAAGACAGCGCCTGAACTAGGCTCCAAAGGTATCACAGCATTCATAGTT GAGAAGACCTTCAAGGGCTTCTCATGCGCACGCAAGCTAGACAAGTTGGGTATGCGTGGCTCTAACACAGGCGAA CTCATCTTTGAGGATGTTTTCGTTCCCCGGGAGAACGTCCTGGGTGAGTTAAATCGCGGTGTCCGCGTCTTGATG GAGGGTCTGGACTTGGAGCGACTCGTCCTGAGTGCAGGACCATTAGGAATCATGCAAGCTGCGCTTGACCTCGTC CTTCCTTACACACACGTGCGCAAGCAATTCGGTGCACCGATCGCCCACAACCAGCTGGTCCAGGGCAAGCTAGCG GACATGTACACTAAGCTGGCTGCCTCGCGTGCGTACACATATGTTACGGCACGGCATGTAGACAACGCCGCCGTG GAACCTAGCGAGATGGCCGTGCGCACTCATGACTGCGCCGGTGCAATCCTCTACGCCGCCGAACGTGCGACTGAA TGCACGCTCGATGCCATCCAACTCATGGGAGGAACCGGCTATATCAACGAGATTCCTGCTGGGCGCCTTCTCCGG GATGCGAAGCTGTATGAGATTGGCGCTGGTACAAGCGAGATCCGCAGAATGGTCATTGGCCGCGCATTCAACAAG GAGTATGCTTAA |
| Gene | >Pro_DTO377G3_2|g5447.t1 ATGGCGTCCCTAACCCTCCCTCTCCTTCGCACCTCAACACGCGCGGTACGGCTAACCCGCATCCCCGCACTTACC CCGTATTTCCGCTCTATCTCAACAAAACACCCCACGGGCTTTGTACCTCCGTCCGAGAGTGATCTCCTAGAGCTG CGGGAGCGCGTGCAAGATTTCACAAGTACATTATCTATGCTCTAACCCAAGTCGCACTTCTAACCTTGCTGTAGG GCGTGAGATCCCAGCCGATGTTGCTGCACGGACAGATGAACAGAATGAGTTCCCAGCGGAAATGTGGAAGAAGAT GGGTGATGCTGGGTATGGTTCTCTCAAATGGTTGACTCTCTTCTTTGTGAAGGGAGTGTGTTATACAGCGCATAC TAACATATATCAAGGTTCCTCGGTGTCACAGCGGACGAGGAGTACGGTGGCCTGGGTATGGGCTACCAGGCACAC TGCGTGGTGATGGAGGAGATCAGTCGAGCATCCGGTATGTCTTCCAGTATATGGCTGAGGGGAACATTGATCTGA CCTCGATTCTGGATAAAAGGAAGCATCGGTCTCTCTTATGCCGCCCACTCCCAGCTCTGTGTGAACCAGCTCTCC CTCAATGGCTCGACGGAACAAAAAGAGCGCATTCTTCCCGGTCTCCTATCAGGCGAGAAGGTCGGTGCTCTTGCC ATGTCGGAGCATTCAGCTGGCTCCGATGTAGTCAGCATGAAGACCACGGCGAAGGAAGTTGATGGAGGCTGGCTC TTGAATGGAACTAAGATGTGGATTACGAACGTAAGTAGTTTGGGGATATAGAGGGGCTTCGAAGTTCCGATCACA TTGCTCACACCTTCTTACAGGGCCCCGATGCCGATTACATTGTCGTGTACGCTAAGACAGCGCCTGAACTAGGCT CCAAAGGTATCACAGCATTCATAGTTGAGAAGACCTTCAAGGGCTTCTCATGCGCACGCAAGCTAGACAAGTTGG GTATGCGTGGCTCTAACACAGGCGAACTCATCTTTGAGGATGTTTTCGTTCCCCGGGAGAACGTCCTGGGTGAGT TAAATCGCGGTGTCCGCGTCTTGATGGAGGGTCTGGACTTGGAGCGACTCGTCCTGAGTGCAGGACCATTAGGGT GAGCCATCCAATACCCCAGCACAACTCTCGTATTCTAACACTCCCCAGAATCATGCAAGCTGCGCTTGACCTCGT CCTTCCTTACACACACGTGCGCAAGCAATTCGGTGCACCGATCGCCCACAACCAGCTGGTCCAGGGCAAGCTAGC GGACATGTACACTAAGCTGGCTGCCTCGCGTGCGTACACATATGTTACGGCACGGCATGTAGACAACGCCGCCGT GGAACCTAGCGAGATGGCCGTGCGCACTCATGACTGCGCCGGTGCAATCCTCTACGCCGCCGAACGTGCGACTGA ATGCACGCTCGATGCCATCCAACTCATGGGAGGAACCGGCTATATCAACGAGATTCCTGCTGGGCGCCTTCTCCG GGATGCGAAGCTGTATGAGATTGGCGCTGGTACAAGCGAGATCCGCAGAATGGTCATTGGCCGCGCATTCAACAA GGAGTATGCTTAA |