© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5441.t1 |
| Gene name | |
| Location | scaffold_13:119762..120722 |
| Strand | - |
| Gene length (bp) | 960 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 8.12 | 2.59 | 13.65 |
| 5d_25C | Five days - 25 degrees Celsius | 2.87 | 0.35 | 5.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.28 | 0.69 | 7.86 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.86 | 0.00 | 1.97 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.46 | 0.97 | 7.94 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.35 | 0.60 | 6.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.021163 | yes |
| 3d_25C | 7d_25C | 0.146409 | no |
| 3d_25C | 7d_15C | 0.151518 | no |
| 3d_25C | 7d_30C | 0.026584 | yes |
| 3d_25C | 10d_25C | 0.003625 | yes |
| 5d_25C | 7d_25C | 0.484930 | no |
| 5d_25C | 7d_15C | 0.403387 | no |
| 5d_25C | 7d_30C | 0.812838 | no |
| 5d_25C | 10d_25C | 0.073778 | no |
| 7d_25C | 7d_15C | 0.953318 | no |
| 7d_25C | 7d_30C | 0.672504 | no |
| 7d_25C | 10d_25C | 0.022940 | yes |
| 7d_15C | 7d_30C | 0.592579 | no |
| 7d_15C | 10d_25C | 0.018295 | yes |
| 7d_30C | 10d_25C | 0.046552 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5441.t1 MRFNPTLSLAMVASATAAQLTTQLFNFTSSINIENSQLRPNGHLLLTTFYEAHLYTINPLARNPQAELVAALPGA TALTGIAAVGHDKYAVVGGVRGSYHYDNETIYTVDFSKNATNPTIQTVAHIPDADMLNGMASMPSQPHILLIADA RLGSIFRVDITTGVSKVVLKNDALAAPANSSMPIGINGLQVVGGNVYFTNSALNIFARVAVSEDGGTFGRIQVIA QLVREAGDTDSDWDDFAIDASGNAYVAQPSNAIAKITPDGTQSVVAGGGDSLAFIGPTSVQIVPGGKLAYVTTRG GDQGGVSYGGQVVALRLRE* |
| Coding | >Pro_DTO377G3_2|g5441.t1 ATGCGTTTCAATCCTACATTGAGCCTGGCCATGGTGGCCAGCGCCACAGCCGCCCAATTGACAACCCAACTATTC AACTTCACCAGCTCAATCAACATCGAAAACAGCCAGCTCCGGCCCAACGGCCATCTCCTCCTCACAACATTCTAC GAAGCCCATCTCTACACAATCAACCCGCTCGCCCGCAATCCCCAAGCCGAGCTAGTCGCCGCGCTCCCCGGCGCC ACAGCTCTAACCGGCATTGCAGCCGTCGGCCACGACAAGTATGCCGTCGTAGGCGGAGTCCGGGGCTCATACCAC TACGACAACGAAACCATCTACACTGTCGACTTTAGCAAGAATGCCACAAACCCCACCATCCAGACCGTCGCGCAC ATCCCGGACGCCGATATGCTAAACGGCATGGCCTCAATGCCGTCGCAGCCGCATATTCTCCTGATCGCGGACGCG CGGTTGGGATCCATATTCCGCGTCGACATCACTACCGGTGTCTCGAAGGTTGTGTTGAAGAACGACGCCCTGGCC GCGCCTGCGAACTCGTCCATGCCCATCGGCATCAATGGTCTGCAGGTTGTCGGAGGTAATGTGTACTTCACCAAT AGTGCGCTTAATATATTCGCCCGGGTGGCTGTCAGCGAAGACGGGGGGACTTTCGGTCGTATTCAGGTCATTGCG CAGTTGGTGCGCGAGGCCGGCGATACGGATTCGGATTGGGATGATTTTGCGATTGATGCTAGTGGTAATGCTTAT GTGGCGCAGCCGTCTAATGCCATTGCTAAGATCACGCCGGATGGAACGCAGAGTGTCGTTGCTGGTGGGGGTGAT AGCTTGGCTTTTATTGGCCCTACTTCTGTGCAGATCGTGCCGGGTGGGAAATTGGCTTATGTTACTACTCGTGGA GGTGACCAGGGGGGTGTCTCTTATGGTGGGCAGGTTGTTGCGCTTCGGCTTCGCGAGTAG |
| Transcript | >Pro_DTO377G3_2|g5441.t1 ATGCGTTTCAATCCTACATTGAGCCTGGCCATGGTGGCCAGCGCCACAGCCGCCCAATTGACAACCCAACTATTC AACTTCACCAGCTCAATCAACATCGAAAACAGCCAGCTCCGGCCCAACGGCCATCTCCTCCTCACAACATTCTAC GAAGCCCATCTCTACACAATCAACCCGCTCGCCCGCAATCCCCAAGCCGAGCTAGTCGCCGCGCTCCCCGGCGCC ACAGCTCTAACCGGCATTGCAGCCGTCGGCCACGACAAGTATGCCGTCGTAGGCGGAGTCCGGGGCTCATACCAC TACGACAACGAAACCATCTACACTGTCGACTTTAGCAAGAATGCCACAAACCCCACCATCCAGACCGTCGCGCAC ATCCCGGACGCCGATATGCTAAACGGCATGGCCTCAATGCCGTCGCAGCCGCATATTCTCCTGATCGCGGACGCG CGGTTGGGATCCATATTCCGCGTCGACATCACTACCGGTGTCTCGAAGGTTGTGTTGAAGAACGACGCCCTGGCC GCGCCTGCGAACTCGTCCATGCCCATCGGCATCAATGGTCTGCAGGTTGTCGGAGGTAATGTGTACTTCACCAAT AGTGCGCTTAATATATTCGCCCGGGTGGCTGTCAGCGAAGACGGGGGGACTTTCGGTCGTATTCAGGTCATTGCG CAGTTGGTGCGCGAGGCCGGCGATACGGATTCGGATTGGGATGATTTTGCGATTGATGCTAGTGGTAATGCTTAT GTGGCGCAGCCGTCTAATGCCATTGCTAAGATCACGCCGGATGGAACGCAGAGTGTCGTTGCTGGTGGGGGTGAT AGCTTGGCTTTTATTGGCCCTACTTCTGTGCAGATCGTGCCGGGTGGGAAATTGGCTTATGTTACTACTCGTGGA GGTGACCAGGGGGGTGTCTCTTATGGTGGGCAGGTTGTTGCGCTTCGGCTTCGCGAGTAG |
| Gene | >Pro_DTO377G3_2|g5441.t1 ATGCGTTTCAATCCTACATTGAGCCTGGCCATGGTGGCCAGCGCCACAGCCGCCCAATTGACAACCCAACTATTC AACTTCACCAGCTCAATCAACATCGAAAACAGCCAGCTCCGGCCCAACGGCCATCTCCTCCTCACAACATTCTAC GAAGCCCATCTCTACACAATCAACCCGCTCGCCCGCAATCCCCAAGCCGAGCTAGTCGCCGCGCTCCCCGGCGCC ACAGCTCTAACCGGCATTGCAGCCGTCGGCCACGACAAGTATGCCGTCGTAGGCGGAGTCCGGGGCTCATACCAC TACGACAACGAAACCATCTACACTGTCGACTTTAGCAAGAATGCCACAAACCCCACCATCCAGACCGTCGCGCAC ATCCCGGACGCCGATATGCTAAACGGCATGGCCTCAATGCCGTCGCAGCCGCATATTCTCCTGATCGCGGACGCG CGGTTGGGATCCATATTCCGCGTCGACATCACTACCGGTGTCTCGAAGGTTGTGTTGAAGAACGACGCCCTGGCC GCGCCTGCGAACTCGTCCATGCCCATCGGCATCAATGGTCTGCAGGTTGTCGGAGGTAATGTGTACTTCACCAAT AGTGCGCTTAATATATTCGCCCGGGTGGCTGTCAGCGAAGACGGGGGGACTTTCGGTCGTATTCAGGTCATTGCG CAGTTGGTGCGCGAGGCCGGCGATACGGATTCGGATTGGGATGATTTTGCGATTGATGCTAGTGGTAATGCTTAT GTGGCGCAGCCGTCTAATGCCATTGCTAAGATCACGCCGGATGGAACGCAGAGTGTCGTTGCTGGTGGGGGTGAT AGCTTGGCTTTTATTGGCCCTACTTCTGTGCAGATCGTGCCGGGTGGGAAATTGGCTTATGTTACTACTCGTGGA GGTGACCAGGGGGGTGTCTCTTATGGTGGGCAGGTTGTTGCGCTTCGGCTTCGCGAGTAG |