© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5421.t1 |
| Gene name | |
| Location | scaffold_13:44599..45324 |
| Strand | + |
| Gene length (bp) | 725 |
| Transcript length (bp) | 501 |
| Coding sequence length (bp) | 501 |
| Protein length (aa) | 167 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01284 | MARVEL | Membrane-associating domain | 4.9E-19 | 8 | 137 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 34 | 22 |
| 2 | 49 | 68 | 19 |
| 3 | 73 | 95 | 22 |
| 4 | 126 | 148 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.06 | 0.00 | 4.48 |
| 5d_25C | Five days - 25 degrees Celsius | 3.82 | 0.00 | 7.65 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.70 | 0.00 | 5.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.85 | 0.00 | 6.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 14.88 | 0.31 | 29.45 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.51 | 0.49 | 14.53 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.372938 | no |
| 3d_25C | 7d_25C | 0.775953 | no |
| 3d_25C | 7d_15C | 0.004450 | yes |
| 3d_25C | 7d_30C | 0.041989 | yes |
| 3d_25C | 10d_25C | 0.714136 | no |
| 5d_25C | 7d_25C | 0.667192 | no |
| 5d_25C | 7d_15C | 0.009124 | yes |
| 5d_25C | 7d_30C | 0.238525 | no |
| 5d_25C | 10d_25C | 0.718507 | no |
| 7d_25C | 7d_15C | 0.011993 | yes |
| 7d_25C | 7d_30C | 0.128133 | no |
| 7d_25C | 10d_25C | 0.960427 | no |
| 7d_15C | 7d_30C | 0.239688 | no |
| 7d_15C | 10d_25C | 0.010083 | yes |
| 7d_30C | 10d_25C | 0.122452 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5421.t1 MPVISRLASIILRVAEIAFAAVVAGVIGHYLAQVNHSGTDIDWWPQSRWIYTEVIAGLSILLGLIWLIPFASGFF SWPLDILISFAWFAAFGVLVDTIRRLPCGSIWSWHFRGDQTCGRWKAAEAFSFLSAIVWLASGIVGIWFTFRVRQ STSDGVRRRRWGRSAV* |
| Coding | >Pro_DTO377G3_2|g5421.t1 ATGCCCGTCATTTCACGCCTCGCGTCTATCATCCTCCGCGTTGCGGAGATTGCCTTTGCAGCTGTCGTCGCAGGT GTCATCGGACACTACCTTGCCCAGGTTAACCACAGCGGCACAGATATTGACTGGTGGCCTCAGTCGCGATGGATC TATACTGAAGTAATCGCCGGCTTATCGATACTGCTGGGCCTCATATGGCTGATCCCGTTCGCGTCGGGATTCTTC TCCTGGCCTCTGGACATCCTCATTTCATTTGCTTGGTTCGCTGCATTCGGTGTCCTCGTCGACACCATCCGCCGC CTGCCCTGCGGCAGCATCTGGTCCTGGCACTTTAGAGGGGACCAGACATGTGGTCGCTGGAAGGCAGCTGAGGCT TTCAGCTTCCTTTCAGCCATTGTCTGGCTTGCTTCTGGTATCGTGGGGATCTGGTTCACCTTCCGTGTTCGCCAA AGCACCTCTGACGGAGTTCGCCGCCGCCGCTGGGGTCGCTCCGCCGTCTAG |
| Transcript | >Pro_DTO377G3_2|g5421.t1 ATGCCCGTCATTTCACGCCTCGCGTCTATCATCCTCCGCGTTGCGGAGATTGCCTTTGCAGCTGTCGTCGCAGGT GTCATCGGACACTACCTTGCCCAGGTTAACCACAGCGGCACAGATATTGACTGGTGGCCTCAGTCGCGATGGATC TATACTGAAGTAATCGCCGGCTTATCGATACTGCTGGGCCTCATATGGCTGATCCCGTTCGCGTCGGGATTCTTC TCCTGGCCTCTGGACATCCTCATTTCATTTGCTTGGTTCGCTGCATTCGGTGTCCTCGTCGACACCATCCGCCGC CTGCCCTGCGGCAGCATCTGGTCCTGGCACTTTAGAGGGGACCAGACATGTGGTCGCTGGAAGGCAGCTGAGGCT TTCAGCTTCCTTTCAGCCATTGTCTGGCTTGCTTCTGGTATCGTGGGGATCTGGTTCACCTTCCGTGTTCGCCAA AGCACCTCTGACGGAGTTCGCCGCCGCCGCTGGGGTCGCTCCGCCGTCTAG |
| Gene | >Pro_DTO377G3_2|g5421.t1 ATGCCCGTCATTTCACGCCTCGCGTCTATCATCCTCCGCGTTGCGGAGATTGCCTTTGCAGCTGTGAATAGCCCT GATCAAGCTCAACTTATTGACCGCATCTGACTCTGTTCTAGGTCGTCGCAGGTGTCATCGGACACTACCTTGCCC AGGTTAACCACAGCGGCACAGATATTGACTGGTGGCCTCAGTCGCGATGGATCTATACTGAAGTAATCGCCGGCT TATCGATACTGCTGGGCCTCATATGGCTGATCCCGTTCGCGTCGGGATTCTTCTCCTGGCCTCGTATGTGCTGGA TATACCTGGTGAATATGGAGCAATACTTACTGGAATATAGTGGACATCCTCATTTCATTTGCTTGGTTCGCTGCA TTCGGTGTCCTCGTCGACACCATCCGCCGCCTGCCCTGCGGCAGCATCTGGTCCTGGCACTTTAGAGGGGACCAG ACATGTGGTCGCTGGAAGGCAGCTGAGGCTTTCAGCTTCCTTTCAGCCATTGTCTGGCTTGCTTCTGGTATCGTG GTATGTGATGAGATGATACAACCCACATGTGAATACGGACTAAGAAACTCTCAGGGGATCTGGTTCACCTTCCGT GTTCGCCAAAGCACCTCTGACGGAGTGTAAGTAACCAATGACATCTTCTGATAATAGCTTCTTGATTGATTGATA CTGATATACTGAACAGTCGCCGCCGCCGCTGGGGTCGCTCCGCCGTCTAG |