Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5417.t1
Gene name
Locationscaffold_13:26559..29563
Strand-
Gene length (bp)3004
Transcript length (bp)1854
Coding sequence length (bp)1854
Protein length (aa) 618

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01184 Gpr1_Fun34_YaaH GPR1/FUN34/yaaH family 2.1E-63 60 267
PF01926 MMR_HSR1 50S ribosome-binding GTPase 3.1E-14 411 514

GO

GO Term Description Terminal node
GO:0005525 GTP binding Yes
GO:0016021 integral component of membrane Yes
GO:0036094 small molecule binding No
GO:0032553 ribonucleotide binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0043167 ion binding No
GO:0017076 purine nucleotide binding No
GO:0097367 carbohydrate derivative binding No
GO:0005575 cellular_component No
GO:0000166 nucleotide binding No
GO:0005488 binding No
GO:1901265 nucleoside phosphate binding No
GO:0003674 molecular_function No
GO:0032561 guanyl ribonucleotide binding No
GO:0019001 guanyl nucleotide binding No
GO:0097159 organic cyclic compound binding No
GO:0032555 purine ribonucleotide binding No
GO:0031224 intrinsic component of membrane No
GO:0110165 cellular anatomical entity No
GO:1901363 heterocyclic compound binding No
GO:0043168 anion binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 16 0.45

Transmembrane Domains

Domain # Start End Length
1 74 96 22
2 100 122 22
3 129 151 22
4 171 190 19
5 197 216 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 11.60 5.50 17.71
5d_25C Five days - 25 degrees Celsius 11.07 5.16 16.98
7d_25C Seven days - 25 degrees Celsius 10.77 5.03 16.51
10d_25C Ten days - 25 degrees Celsius 9.96 4.59 15.33
7d_15C Seven days - 15 degrees Celsius 13.40 6.60 20.19
7d_30C Seven days - 30 degrees Celsius 9.97 4.56 15.38

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.918412 no
3d_25C 7d_25C 0.863851 no
3d_25C 7d_15C 0.698695 no
3d_25C 7d_30C 0.692863 no
3d_25C 10d_25C 0.687813 no
5d_25C 7d_25C 0.956439 no
5d_25C 7d_15C 0.594703 no
5d_25C 7d_30C 0.803566 no
5d_25C 10d_25C 0.802997 no
7d_25C 7d_15C 0.524575 no
7d_25C 7d_30C 0.857196 no
7d_25C 10d_25C 0.856719 no
7d_15C 7d_30C 0.351823 no
7d_15C 10d_25C 0.351900 no
7d_30C 10d_25C 0.998349 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5417.t1
MEHTITVTTVQRTKAASNHHIQPSTQDKIGSPVVSQASRDYSPPPSNIPETPIPLCKLELQSLPVNVRTIANPAP
LGLCAFALTSFLSNCVALNVGGMKVAGVSMSLALSYGGIAQVLAGMWEMAAGNTFGATTFCSFGAYWISFSLIST
FDDTDFTRSTVDPLCQNELLMGLFMLGWCIFTTLMLLCTLKSNLAMFSLYFFMDMNYLLLGIAHIQCNSHGEIPV
ALERTGGIFGILAASSAWYNAFAAISDINNSFLIVPVGHFPWSTAAHLRRVKAKEFVPRNVFPHYGAIPRSYFLG
HHRAGLTKMKSMLSTIDYVVECRDYRAPVTSINPMFEEALGKMRRLVVYTKRDLGSTPRSSAQKIIERKLQGFDP
KSAVFFTSSSSRQDVSQIIKHLRTDAEAPDKLVGCRVLVVGMPNVGKSTLINNLRNSGTGKAKAMKTGQQPGITR
KVATQVKIIDRENGSHVYVLDTPGVFMPYVPEAENMLKLALCGCVKDNVISAITMADYLLYHINLNDPSVYKRWS
EPTNDVVPLIESFARQTGLLAKGGVPMMDGAALLFIQKWRQGELGQFLVDDLEAEEQRRGDPTQTPRMSMTQALR
VERTTRKNKPDATTSDL*
Coding >Pro_DTO377G3_2|g5417.t1
ATGGAGCATACTATTACCGTCACTACGGTCCAAAGAACCAAGGCTGCATCAAACCATCACATCCAGCCGAGTACG
CAGGACAAGATTGGCTCCCCAGTGGTGTCTCAAGCCAGCCGTGATTACTCTCCGCCCCCATCAAATATTCCGGAG
ACACCTATACCATTGTGCAAACTGGAACTTCAGTCTTTGCCTGTTAACGTTCGGACCATTGCCAATCCCGCTCCC
CTGGGTCTATGTGCATTTGCATTGACATCGTTCCTCTCGAATTGTGTCGCCCTCAATGTGGGAGGTATGAAAGTA
GCAGGGGTCAGTATGTCCTTGGCTTTGAGTTATGGTGGTATAGCGCAGGTGTTGGCTGGAATGTGGGAAATGGCG
GCTGGGAATACTTTTGGTGCGACGACCTTTTGTTCTTTCGGTGCCTATTGGATATCATTTTCTCTGATCTCGACT
TTCGACGATACCGATTTTACAAGAAGTACAGTAGATCCACTATGTCAGAACGAGCTCTTAATGGGCCTGTTCATG
TTGGGCTGGTGCATCTTCACTACACTGATGCTCTTGTGCACTCTCAAATCTAATCTTGCGATGTTCTCTCTGTAC
TTTTTCATGGACATGAACTACCTTCTACTCGGCATTGCGCACATTCAATGCAACTCTCATGGCGAGATTCCGGTT
GCACTTGAGAGGACAGGCGGTATTTTTGGCATTTTGGCAGCGTCTTCGGCTTGGTATAATGCCTTTGCGGCTATT
TCTGATATCAATAACAGTTTTCTAATAGTTCCCGTTGGTCATTTCCCTTGGTCTACAGCTGCACATCTTCGTCGG
GTTAAGGCTAAAGAGTTCGTTCCGCGCAATGTATTCCCTCATTATGGGGCTATTCCACGGTCCTATTTCTTAGGA
CACCACAGGGCTGGTCTGACCAAGATGAAAAGCATGCTCTCAACTATCGACTATGTTGTCGAGTGTCGTGATTAT
CGAGCTCCCGTGACCTCGATCAACCCCATGTTTGAGGAAGCTTTGGGCAAGATGCGACGACTGGTCGTCTACACT
AAGAGAGATCTGGGAAGCACTCCCAGATCATCTGCCCAGAAAATAATAGAACGCAAACTGCAAGGTTTTGATCCA
AAGAGCGCCGTGTTTTTCACCAGCTCGTCCTCCCGGCAAGATGTCAGCCAGATCATCAAGCACCTTCGAACCGAC
GCCGAAGCTCCCGATAAGTTAGTAGGCTGTCGAGTGTTAGTTGTCGGAATGCCCAATGTTGGCAAGTCAACACTG
ATCAACAATCTACGCAACTCAGGCACGGGCAAAGCCAAGGCTATGAAAACCGGGCAGCAACCCGGTATCACACGC
AAGGTAGCCACGCAGGTGAAGATCATTGATCGTGAGAACGGATCACATGTCTACGTTCTGGACACGCCGGGAGTG
TTTATGCCATATGTTCCAGAAGCAGAGAATATGCTCAAGCTGGCTCTCTGTGGCTGTGTCAAGGACAATGTCATT
TCCGCGATAACCATGGCGGATTACTTGTTGTATCATATAAACCTGAATGATCCATCAGTATACAAGCGCTGGTCG
GAACCGACCAATGATGTGGTTCCATTAATTGAAAGCTTTGCGCGCCAAACTGGCCTGCTCGCAAAAGGCGGGGTG
CCAATGATGGATGGAGCCGCACTTCTTTTTATACAGAAATGGAGACAAGGAGAGCTAGGTCAATTTTTGGTGGAC
GACCTAGAAGCAGAGGAACAACGGCGGGGAGATCCTACGCAAACACCGCGCATGAGCATGACGCAGGCCTTGAGA
GTGGAAAGGACAACTCGAAAGAACAAACCGGATGCAACAACGAGCGATCTGTAA
Transcript >Pro_DTO377G3_2|g5417.t1
ATGGAGCATACTATTACCGTCACTACGGTCCAAAGAACCAAGGCTGCATCAAACCATCACATCCAGCCGAGTACG
CAGGACAAGATTGGCTCCCCAGTGGTGTCTCAAGCCAGCCGTGATTACTCTCCGCCCCCATCAAATATTCCGGAG
ACACCTATACCATTGTGCAAACTGGAACTTCAGTCTTTGCCTGTTAACGTTCGGACCATTGCCAATCCCGCTCCC
CTGGGTCTATGTGCATTTGCATTGACATCGTTCCTCTCGAATTGTGTCGCCCTCAATGTGGGAGGTATGAAAGTA
GCAGGGGTCAGTATGTCCTTGGCTTTGAGTTATGGTGGTATAGCGCAGGTGTTGGCTGGAATGTGGGAAATGGCG
GCTGGGAATACTTTTGGTGCGACGACCTTTTGTTCTTTCGGTGCCTATTGGATATCATTTTCTCTGATCTCGACT
TTCGACGATACCGATTTTACAAGAAGTACAGTAGATCCACTATGTCAGAACGAGCTCTTAATGGGCCTGTTCATG
TTGGGCTGGTGCATCTTCACTACACTGATGCTCTTGTGCACTCTCAAATCTAATCTTGCGATGTTCTCTCTGTAC
TTTTTCATGGACATGAACTACCTTCTACTCGGCATTGCGCACATTCAATGCAACTCTCATGGCGAGATTCCGGTT
GCACTTGAGAGGACAGGCGGTATTTTTGGCATTTTGGCAGCGTCTTCGGCTTGGTATAATGCCTTTGCGGCTATT
TCTGATATCAATAACAGTTTTCTAATAGTTCCCGTTGGTCATTTCCCTTGGTCTACAGCTGCACATCTTCGTCGG
GTTAAGGCTAAAGAGTTCGTTCCGCGCAATGTATTCCCTCATTATGGGGCTATTCCACGGTCCTATTTCTTAGGA
CACCACAGGGCTGGTCTGACCAAGATGAAAAGCATGCTCTCAACTATCGACTATGTTGTCGAGTGTCGTGATTAT
CGAGCTCCCGTGACCTCGATCAACCCCATGTTTGAGGAAGCTTTGGGCAAGATGCGACGACTGGTCGTCTACACT
AAGAGAGATCTGGGAAGCACTCCCAGATCATCTGCCCAGAAAATAATAGAACGCAAACTGCAAGGTTTTGATCCA
AAGAGCGCCGTGTTTTTCACCAGCTCGTCCTCCCGGCAAGATGTCAGCCAGATCATCAAGCACCTTCGAACCGAC
GCCGAAGCTCCCGATAAGTTAGTAGGCTGTCGAGTGTTAGTTGTCGGAATGCCCAATGTTGGCAAGTCAACACTG
ATCAACAATCTACGCAACTCAGGCACGGGCAAAGCCAAGGCTATGAAAACCGGGCAGCAACCCGGTATCACACGC
AAGGTAGCCACGCAGGTGAAGATCATTGATCGTGAGAACGGATCACATGTCTACGTTCTGGACACGCCGGGAGTG
TTTATGCCATATGTTCCAGAAGCAGAGAATATGCTCAAGCTGGCTCTCTGTGGCTGTGTCAAGGACAATGTCATT
TCCGCGATAACCATGGCGGATTACTTGTTGTATCATATAAACCTGAATGATCCATCAGTATACAAGCGCTGGTCG
GAACCGACCAATGATGTGGTTCCATTAATTGAAAGCTTTGCGCGCCAAACTGGCCTGCTCGCAAAAGGCGGGGTG
CCAATGATGGATGGAGCCGCACTTCTTTTTATACAGAAATGGAGACAAGGAGAGCTAGGTCAATTTTTGGTGGAC
GACCTAGAAGCAGAGGAACAACGGCGGGGAGATCCTACGCAAACACCGCGCATGAGCATGACGCAGGCCTTGAGA
GTGGAAAGGACAACTCGAAAGAACAAACCGGATGCAACAACGAGCGATCTGTAA
Gene >Pro_DTO377G3_2|g5417.t1
ATGGAGCATACTATTACCGTCACTACGGTCCAAAGAACCAAGGCTGCATCAAACCATCACATCCAGCCGAGTACG
CAGGACAAGATTGGCTCCCCAGTGGTGTCTCAAGCCAGCCGTGATTACTCTCCGCCCCCATCAAATATTCCGGAG
ACACCTATACCATTGTGCAAACTGGAACTTCAGTCTTTGCCTGTTAACGTTCGGACCATTGCCAATCCCGCTCCC
CTGGGTCTATGTGCATTTGCATTGACATCGTTCCTCTCGAATTGTGTCGCCCTCAATGTGGGAGGTATGAAAGTA
GCAGGGGTCAGTATGTCCTTGGCTTTGAGTTATGGTGGTATAGCGCAGGTGTTGGCTGGAATGTGGTATGTCCTA
TCCTGCTTTGTGTGTTGCCTAGTGCTAATAAGAGTAGGGAAATGGCGGCTGGGAATACTTTTGGTGCGACGACCT
TTTGTTCTTTCGGTGCCTATTGGATATCATTTTCTCTGATCTCGACTTTCGACGATACCGATTTTACAAGAAGTA
CAGTAGATCCACTATGTCAGAACGAGCTCTTAATGGGCCTGTTCATGTTGGTAAGCCAATTCCATCAAATTCAAG
ATTTACTATCATGGGAAAAGATACTGAGAACGATGTATGTATACAGGGCTGGTGCATCTTCACTACACTGATGCT
CTTGTGCACTCTCAAATCTAATCTTGCGATGTTCTCTCTGTACTTTTTCATGGACATGAACTACCTTCTACTCGG
CATTGCGCACATTCAATGCAACTCTCATGGCGAGATTCCGGTTGCACTTGAGAGGACAGGCGGTATTTTTGGCAT
TTTGGCAGCGTCTTCGGCTTGGTATAATGCCTTTGCGGCTATTTCTGATATCAATAACAGTTTTCTAATAGTTCC
CGTTGGTCATTTCCCTTGGTCTACAGCTGCACATCTTCGTCGGGTTAAGGCTAAAGAGGTGTGATCTCGGACTAA
GAACGGAAAAACCACAACATATAGTCCCTCTCTTCATGGTACGAATGTCTGTCGTGGACCGGCGAATCAAGAAAT
GAAGTATTCTTGACTATTGTGTTTGATCCCGTTGCTCAATAGGAAGATTATATTCTGAGAAAGATACTTGAAACA
TTGGACCTCAAATTGAATTGTGCTCTGAGAATACTGGCAGTATTCCTTGCATAAGTCTGATACAAAAGATACCCG
TATGATTCCTGGGTGGACCAGCCACCACACTGTTGGTCAATGAGCCTTCGAGGGTGACGCTGTCGGAGCATACGG
CAGAAGGAAACCCCGACCAGGAAAACGGAGAAAGACAAGTGGAAAATGAGTGACAATTGAGCTACGTAGAACGAA
AAATCCCGAGACACATTGGGTGGGGTTGGACAAGAGAGGCAGGGCTGCCTCGGGGTTTGTCTGTTTGCGTCACAT
ACACGGCTAAACCACGGTGATCACTTTAGACAAAAAGTAGCAGTGGTAGAGATCTAGGGGGCCCAGTTAACGGGC
TTTGGCAAGCATCGACGGGCTCTGGCGGGCTCTGGCGGGCTTTGGTAACCATCTCCCGCTCGGCAGCCGAACGTA
CCACGCGCCAAATTATTATTAGAAGTAGGGTTGACCTAACCTGTGTTTTCTGTTGAGCTTGAATTAGAAGGAAAG
CTATGCTCGCGCAAAAAGGAAACATGAATCTCCAGAATGAAGCACTACGGAAGTCTGCAAAGCCCTAAGTTGCTG
CACATGATTCACTCACCGCCCGCCCTTCCGCCCTGGACATTTTGACGGGTTTTTTGTTGCCTTCCGCGGACCAGC
GATTTTATTTGTTGAATCAATCCAGTCCCTTGAGACTGATCATCCACCGCTCCGATTAAGATGAATCATATTTCA
CCGGACTGAAAAACACTATCCTTCAACGAGCTCCAATGGCCCAGTTCGTTCCGCGCAATGTATTCCCTCATTATG
GGGCTATTCCACGGTCCTATTTCTTAGGACACCACAGGGCTGGTCTGACCAAGATGAAAAGCATGCTCTCAACTA
TCGACTATGTTGTCGAGTGTCGTGATTATCGAGCTCCCGTGACCTCGATCAACCCCATGTTTGAGGAAGCTTTGG
GCAAGATGCGACGACTGGTCGTCTACACTAAGAGAGATCTGGGAAGCACTCCCAGATCATCTGCCCAGAAAATAG
TAAGTATTTTCTTCTTGGCTATGCAGTGAGATAACAGACCACTGCTGGATATCAGCTAAAAGTGCTGTAGATAGA
ACGCAAACTGCAAGGTTTTGATCCAAAGAGCGCCGTGTTTTTCACCAGCTCGTCCTCCCGGCAAGATGTCAGCCA
GATCATCAAGCACCTTCGAACCGACGCCGAAGCTCCCGATAAGTTAGTAGGCTGTCGAGTGTTAGTTGTCGGAAT
GCCCAATGTTGGCAAGTCAACACTGATCAACAATCTACGCAACTCAGGCACGGGCAAAGCCAAGGCTATGAAAAC
CGGGCAGCAACCCGGTATCACACGCAAGGTAGCCACGCAGGTGAAGATCATTGATCGTGAGAACGGATCACATGT
CTACGTTCTGGACACGCCGGGAGTGTTTATGCCATATGTTCCAGAAGCAGAGAATATGCTCAAGCTGGCTCTCTG
TGGCTGTGTCAAGGACAATGTCATTTCCGCGATAACCATGGCGGATTACTTGTTGTATCATATAAACCTGAATGA
TCCATCAGTATACAAGCGCTGGTCGGAACCGACCAATGATGTGGTTCCATTAATTGAAAGCTTTGCGCGCCAAAC
TGGCCTGCTCGCAAAAGGCGGGGTGCCAATGATGGATGGAGCCGCACTTCTTTTTATACAGAAATGGAGACAAGG
AGAGCTAGGTCAATTTTTGGTGGACGACCTAGAAGCAGAGGAACAACGGCGGGGAGATCCTACGCAAACACCGCG
CATGAGCATGACGCAGGCCTTGAGAGTGGAAAGGACAACTCGAAAGAACAAACCGGATGCAACAACGAGCGATCT
GTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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