© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5416.t1 |
| Gene name | |
| Location | scaffold_13:25526..26373 |
| Strand | + |
| Gene length (bp) | 847 |
| Transcript length (bp) | 753 |
| Coding sequence length (bp) | 753 |
| Protein length (aa) | 251 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06246 | Isy1 | Isy1-like splicing family | 1.4E-82 | 1 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000350 | generation of catalytic spliceosome for second transesterification step | Yes |
| GO:0022618 | ribonucleoprotein complex assembly | No |
| GO:0008150 | biological_process | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0009987 | cellular process | No |
| GO:0016043 | cellular component organization | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0071826 | ribonucleoprotein complex subunit organization | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5416.t1 MARNSEKAQSMLFRFRAQQAADLGIIDVSRTRRPKAITSIDTVPVCERWRGQVVKEISRKVSRIHVQSLSDYQIR DLNDEINKLMREKWAWEMQIRNLGGPNYMRGSNRLYDDEGREIPGGGRGYKYYGRARELPGVKEMIEAAVTRAKG PAEEEAVSGRGGDIATRKVDANYFGYGLDEEDGTLLAYEKQKEKESVEHLRHQGEDDAEDGWQSLPGDAGDGVEW RLPTLDEVQEELVDRRRRRLLDKIS* |
| Coding | >Pro_DTO377G3_2|g5416.t1 ATGGCACGCAACAGTGAAAAAGCGCAGTCTATGCTGTTCCGCTTCCGCGCGCAGCAAGCAGCCGACCTCGGAATC ATTGATGTCTCACGCACCCGACGGCCCAAAGCGATCACGTCCATCGATACGGTGCCAGTATGCGAGCGCTGGCGC GGACAGGTCGTCAAAGAAATTTCGCGCAAAGTATCACGCATCCACGTGCAAAGCCTGAGCGACTACCAGATCCGC GATCTCAACGATGAGATTAACAAGCTCATGCGTGAGAAATGGGCGTGGGAAATGCAAATCCGCAACCTCGGCGGA CCGAACTACATGCGTGGATCGAACCGACTTTACGACGATGAAGGACGCGAGATCCCCGGCGGAGGAAGAGGCTAC AAATATTATGGTCGTGCCCGGGAGCTGCCTGGTGTCAAAGAAATGATTGAGGCTGCGGTTACTCGCGCGAAAGGA CCGGCGGAGGAAGAGGCTGTGTCTGGCCGCGGTGGAGATATTGCGACGAGGAAGGTTGATGCCAACTACTTCGGC TATGGTCTCGATGAAGAAGATGGTACGTTATTGGCGTATGAGAAACAGAAGGAGAAGGAGTCTGTTGAACACCTG CGCCACCAAGGAGAGGATGATGCTGAAGATGGCTGGCAATCTCTACCTGGTGATGCGGGCGACGGGGTGGAATGG AGACTCCCGACGCTGGATGAGGTCCAGGAAGAGCTTGTGGATAGGCGGCGCCGCCGCCTTCTGGACAAGATCTCT TGA |
| Transcript | >Pro_DTO377G3_2|g5416.t1 ATGGCACGCAACAGTGAAAAAGCGCAGTCTATGCTGTTCCGCTTCCGCGCGCAGCAAGCAGCCGACCTCGGAATC ATTGATGTCTCACGCACCCGACGGCCCAAAGCGATCACGTCCATCGATACGGTGCCAGTATGCGAGCGCTGGCGC GGACAGGTCGTCAAAGAAATTTCGCGCAAAGTATCACGCATCCACGTGCAAAGCCTGAGCGACTACCAGATCCGC GATCTCAACGATGAGATTAACAAGCTCATGCGTGAGAAATGGGCGTGGGAAATGCAAATCCGCAACCTCGGCGGA CCGAACTACATGCGTGGATCGAACCGACTTTACGACGATGAAGGACGCGAGATCCCCGGCGGAGGAAGAGGCTAC AAATATTATGGTCGTGCCCGGGAGCTGCCTGGTGTCAAAGAAATGATTGAGGCTGCGGTTACTCGCGCGAAAGGA CCGGCGGAGGAAGAGGCTGTGTCTGGCCGCGGTGGAGATATTGCGACGAGGAAGGTTGATGCCAACTACTTCGGC TATGGTCTCGATGAAGAAGATGGTACGTTATTGGCGTATGAGAAACAGAAGGAGAAGGAGTCTGTTGAACACCTG CGCCACCAAGGAGAGGATGATGCTGAAGATGGCTGGCAATCTCTACCTGGTGATGCGGGCGACGGGGTGGAATGG AGACTCCCGACGCTGGATGAGGTCCAGGAAGAGCTTGTGGATAGGCGGCGCCGCCGCCTTCTGGACAAGATCTCT TGA |
| Gene | >Pro_DTO377G3_2|g5416.t1 ATGGTGAGACTCACACTTATCAGCTCAAATCCACGGGGAAATCCCCATATCCATGTCGAGTCACGTCTTGCTAAT TCAAGCCCCCGCTATATAATAGGCACGCAACAGTGAAAAAGCGCAGTCTATGCTGTTCCGCTTCCGCGCGCAGCA AGCAGCCGACCTCGGAATCATTGATGTCTCACGCACCCGACGGCCCAAAGCGATCACGTCCATCGATACGGTGCC AGTATGCGAGCGCTGGCGCGGACAGGTCGTCAAAGAAATTTCGCGCAAAGTATCACGCATCCACGTGCAAAGCCT GAGCGACTACCAGATCCGCGATCTCAACGATGAGATTAACAAGCTCATGCGTGAGAAATGGGCGTGGGAAATGCA AATCCGCAACCTCGGCGGACCGAACTACATGCGTGGATCGAACCGACTTTACGACGATGAAGGACGCGAGATCCC CGGCGGAGGAAGAGGCTACAAATATTATGGTCGTGCCCGGGAGCTGCCTGGTGTCAAAGAAATGATTGAGGCTGC GGTTACTCGCGCGAAAGGACCGGCGGAGGAAGAGGCTGTGTCTGGCCGCGGTGGAGATATTGCGACGAGGAAGGT TGATGCCAACTACTTCGGCTATGGTCTCGATGAAGAAGATGGTACGTTATTGGCGTATGAGAAACAGAAGGAGAA GGAGTCTGTTGAACACCTGCGCCACCAAGGAGAGGATGATGCTGAAGATGGCTGGCAATCTCTACCTGGTGATGC GGGCGACGGGGTGGAATGGAGACTCCCGACGCTGGATGAGGTCCAGGAAGAGCTTGTGGATAGGCGGCGCCGCCG CCTTCTGGACAAGATCTCTTGA |