© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5411.t1 |
| Gene name | |
| Location | scaffold_13:11679..13048 |
| Strand | + |
| Gene length (bp) | 1369 |
| Transcript length (bp) | 1233 |
| Coding sequence length (bp) | 1233 |
| Protein length (aa) | 411 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04616 | Glyco_hydro_43 | Glycosyl hydrolases family 43 | 3.0E-32 | 120 | 390 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 58 | 80 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.88 | 0.62 | 5.14 |
| 5d_25C | Five days - 25 degrees Celsius | 2.34 | 0.45 | 4.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.85 | 0.22 | 3.48 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.89 | 0.00 | 1.83 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.55 | 3.14 | 13.96 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.84 | 0.51 | 5.18 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.723264 | no |
| 3d_25C | 7d_25C | 0.411808 | no |
| 3d_25C | 7d_15C | 0.005626 | yes |
| 3d_25C | 7d_30C | 0.986847 | no |
| 3d_25C | 10d_25C | 0.040199 | yes |
| 5d_25C | 7d_25C | 0.704313 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.748449 | no |
| 5d_25C | 10d_25C | 0.091757 | no |
| 7d_25C | 7d_15C | 0.001278 | yes |
| 7d_25C | 7d_30C | 0.440515 | no |
| 7d_25C | 10d_25C | 0.229901 | no |
| 7d_15C | 7d_30C | 0.008807 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.043201 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5411.t1 MATAVPEKYVVPAVVQSIVVSEIPGSSIKSSLDSTVGARAEKGEKKNFFTRPWGRRQIGILCVLGFFGLALTALV IVLPIYFTKIYGFAKDTDNYWRLPQPNEDHSYYLEENRPVFALVNFPDPGLIQHNGTWYAYGTNPKKKNPHTIHV PVATSTDFINWTLHEDYDAMPTLGTWEKKVNHWAPDVIQRDDGKFVMYYSGEAENYGSHHCVGVAVSTGTSPLGP YIPEDKPLACPHKHGGAIDPSPFRDTDGTLYVVYKGDGNSVGRGGNCNNSKKPVVSVPILLQELKSDGITSVGEP VKILDIDDTDGPLVEAPDILLTEDGTYYLFFSSHCYVSLGYNVKYAHSKTPKGPYIRADRPLLQTGDWGLEAPGG ATVSTDGSKIVFHANCGIFRCVEFYENYGNTREPD* |
| Coding | >Pro_DTO377G3_2|g5411.t1 ATGGCGACTGCTGTACCTGAAAAATACGTGGTTCCCGCTGTCGTCCAGTCCATCGTAGTTAGTGAAATCCCAGGC AGCAGCATTAAATCTTCCTTGGATTCGACAGTGGGAGCCAGAGCAGAAAAGGGAGAAAAAAAAAACTTTTTTACT CGACCATGGGGACGACGTCAGATTGGGATACTCTGCGTTCTGGGGTTCTTCGGATTGGCCTTAACAGCACTCGTC ATTGTCCTCCCCATTTATTTCACTAAGATCTACGGCTTTGCGAAAGACACTGATAACTACTGGAGACTACCCCAG CCAAATGAAGACCACAGCTACTACCTCGAGGAGAATCGACCTGTCTTCGCCCTCGTCAATTTCCCGGACCCGGGC CTCATTCAACACAATGGCACATGGTATGCCTACGGGACCAATCCCAAGAAAAAGAACCCCCACACTATCCATGTA CCCGTTGCCACATCGACCGATTTTATTAACTGGACTCTTCACGAGGATTACGACGCGATGCCGACTCTTGGCACT TGGGAGAAGAAGGTCAATCATTGGGCTCCGGATGTGATTCAGCGCGACGACGGCAAATTTGTCATGTATTACTCA GGAGAAGCCGAGAATTACGGGAGCCACCATTGCGTGGGAGTTGCTGTATCAACCGGCACGAGCCCACTAGGCCCT TACATCCCCGAAGACAAGCCACTAGCCTGTCCACACAAGCATGGCGGTGCTATCGACCCCTCACCGTTCAGGGAC ACCGACGGCACGCTGTACGTGGTCTACAAGGGCGACGGAAACAGCGTTGGACGCGGCGGCAACTGCAACAACAGC AAGAAGCCAGTTGTATCCGTTCCGATTCTCCTACAGGAGCTGAAGAGCGATGGTATCACATCCGTCGGGGAGCCA GTGAAAATTCTCGATATTGACGATACAGATGGTCCCCTGGTTGAGGCTCCTGATATCTTGCTCACCGAGGACGGC ACCTACTATCTGTTCTTTTCTTCGCATTGCTATGTCTCGCTGGGCTACAATGTGAAATACGCACACTCGAAAACC CCCAAGGGTCCGTACATCCGGGCTGATCGGCCTTTGCTGCAGACTGGTGATTGGGGGCTCGAGGCGCCTGGTGGT GCGACGGTTTCGACTGATGGGAGCAAGATTGTTTTCCATGCCAATTGCGGTATATTCCGGTGCGTCGAATTCTAC GAAAACTACGGGAACACTCGTGAGCCGGACTAG |
| Transcript | >Pro_DTO377G3_2|g5411.t1 ATGGCGACTGCTGTACCTGAAAAATACGTGGTTCCCGCTGTCGTCCAGTCCATCGTAGTTAGTGAAATCCCAGGC AGCAGCATTAAATCTTCCTTGGATTCGACAGTGGGAGCCAGAGCAGAAAAGGGAGAAAAAAAAAACTTTTTTACT CGACCATGGGGACGACGTCAGATTGGGATACTCTGCGTTCTGGGGTTCTTCGGATTGGCCTTAACAGCACTCGTC ATTGTCCTCCCCATTTATTTCACTAAGATCTACGGCTTTGCGAAAGACACTGATAACTACTGGAGACTACCCCAG CCAAATGAAGACCACAGCTACTACCTCGAGGAGAATCGACCTGTCTTCGCCCTCGTCAATTTCCCGGACCCGGGC CTCATTCAACACAATGGCACATGGTATGCCTACGGGACCAATCCCAAGAAAAAGAACCCCCACACTATCCATGTA CCCGTTGCCACATCGACCGATTTTATTAACTGGACTCTTCACGAGGATTACGACGCGATGCCGACTCTTGGCACT TGGGAGAAGAAGGTCAATCATTGGGCTCCGGATGTGATTCAGCGCGACGACGGCAAATTTGTCATGTATTACTCA GGAGAAGCCGAGAATTACGGGAGCCACCATTGCGTGGGAGTTGCTGTATCAACCGGCACGAGCCCACTAGGCCCT TACATCCCCGAAGACAAGCCACTAGCCTGTCCACACAAGCATGGCGGTGCTATCGACCCCTCACCGTTCAGGGAC ACCGACGGCACGCTGTACGTGGTCTACAAGGGCGACGGAAACAGCGTTGGACGCGGCGGCAACTGCAACAACAGC AAGAAGCCAGTTGTATCCGTTCCGATTCTCCTACAGGAGCTGAAGAGCGATGGTATCACATCCGTCGGGGAGCCA GTGAAAATTCTCGATATTGACGATACAGATGGTCCCCTGGTTGAGGCTCCTGATATCTTGCTCACCGAGGACGGC ACCTACTATCTGTTCTTTTCTTCGCATTGCTATGTCTCGCTGGGCTACAATGTGAAATACGCACACTCGAAAACC CCCAAGGGTCCGTACATCCGGGCTGATCGGCCTTTGCTGCAGACTGGTGATTGGGGGCTCGAGGCGCCTGGTGGT GCGACGGTTTCGACTGATGGGAGCAAGATTGTTTTCCATGCCAATTGCGGTATATTCCGGTGCGTCGAATTCTAC GAAAACTACGGGAACACTCGTGAGCCGGACTAG |
| Gene | >Pro_DTO377G3_2|g5411.t1 ATGGCGACTGCTGTACCTGAAAAATACGTGGTTCCCGCTGTCGTCCAGTCCATCGTAGTTAGTGAAATCCCAGGC AGCAGCATTAAATCTTCCTTGGATTCGACAGTGGGAGCCAGAGCAGAAAAGGGAGAAAAAAAAAACTTTTTTACT CGACCATGGGGACGACGTCAGATTGGGATACTCTGCGTTCTGGGGTTCTTCGGATTGGCCTTAACAGCACTCGTC ATTGTCCTCCCCATTTATTTCACTAAGATCTACGGCTTTGCGAAAGACACTGATAACTACTGGAGACTACCCCAG CCAAATGAAGACCACAGCTACTACCTCGAGGAGAATCGACCTGTCTTCGCCCTCGTCAATTTCCCGGACCCGGGC CTCATTCAACACAATGGCACATGGTATGCCTACGGGACCAATCCCAAGAAAAAGAACCCCCACACTATCCATGTA CCCGTTGCCACATCGACCGATTTTATTAACTGGACTCTTCACGAGGATTACGACGCGATGCCGACTCTTGGCACT TGGGAGAAGAAGGTCAATCATTGGGCTCCGGATGTGATTCAGCGCGTAAGTATACCAATGAGCATTAGCTCCTAT CCAGTCTCTGATATTCATATATGAACTTTTAGGACGACGGCAAATTTGTCATGTATTACTCAGGAGAAGCCGAGA ATTACGGGAGCCACCATTGCGTGGGAGTTGCTGTATCAACCGGCACGAGCCCACTAGGCCCTTACATCCCCGAAG ACAAGCCACTAGCCTGTCCACACAAGCATGGCGGTGCTATCGACCCCTCACCGTTCAGGGACACCGACGGCACGC TGTACGTGGTCTACAAGGGCGACGGAAACAGCGTTGGACGCGGCGGCAACTGCAACAACAGCAAGAAGCCAGTTG TATCCGTTCCGATTCTCCTACAGGAGCTGAAGAGCGATGGTATCACATCCGTCGGGGAGCCAGTGAAAATTCTCG ATATTGACGATACAGATGGTCCCCTGGTTGAGGCTCCTGATATCTTGCTCACCGAGGACGGCACCTACTATCTGT TCTTTTCTTCGCATTGCTATGTCTCGCTGGGCTACAATGTGAAATACGCACACTCGAAAACCCCCAAGGGTCCGT ACATCCGGGCTGATCGGCCTTTGCTGCAGACTGGTGATTGGGGGCTCGAGGCGCCTGGTGGTGCGACGGTTTCGA CTGATGGGAGCAAGATTGTTTTCCATGCCAATTGCGGTATATTCCGGTGTATGTGGTCTGCTGCTATTGATATTC GATCTAATAACAACACGATTGTTATGTCGAAACTCGTGCTTGGCCAGGCGTCGAATTCTACGAAAACTACGGGAA CACTCGTGAGCCGGACTAG |