© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5388.t1 |
| Gene name | |
| Location | scaffold_12:641685..642464 |
| Strand | - |
| Gene length (bp) | 779 |
| Transcript length (bp) | 615 |
| Coding sequence length (bp) | 615 |
| Protein length (aa) | 205 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00293 | NUDIX | NUDIX domain | 7.5E-16 | 56 | 174 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 58 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 89.44 | 49.43 | 129.45 |
| 5d_25C | Five days - 25 degrees Celsius | 36.86 | 16.10 | 57.62 |
| 7d_25C | Seven days - 25 degrees Celsius | 44.92 | 20.04 | 69.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 18.00 | 5.93 | 30.08 |
| 7d_15C | Seven days - 15 degrees Celsius | 31.95 | 12.48 | 51.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 19.70 | 7.01 | 32.40 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.012904 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.604909 | no |
| 5d_25C | 7d_15C | 0.739466 | no |
| 5d_25C | 7d_30C | 0.056880 | no |
| 5d_25C | 10d_25C | 0.028409 | yes |
| 7d_25C | 7d_15C | 0.337148 | no |
| 7d_25C | 7d_30C | 0.009446 | yes |
| 7d_25C | 10d_25C | 0.004450 | yes |
| 7d_15C | 7d_30C | 0.179756 | no |
| 7d_15C | 10d_25C | 0.107450 | no |
| 7d_30C | 10d_25C | 0.866610 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5388.t1 MTQLKSTFLSREPLTSQEAKWKRLVKTNYIDPNGVKRDWESAERQTRPTDSPVDGVNIVAFLNNMNGAEILLEKQ YRPPIDQVVIELPAGLIDAGETIEQAAVRELKEETGYIGVSDKTTGIMYNDPGFCNANFNMVYVQVDMSLPENQN PKPDLEDNEFIECFTLPVSELSAELQKLESEGYAIDARVGSIAEGIEIAKRLKL* |
| Coding | >Pro_DTO377G3_2|g5388.t1 ATGACGCAACTTAAGTCCACATTTCTCTCACGAGAGCCCTTGACCTCCCAAGAAGCCAAATGGAAAAGACTAGTC AAAACGAACTACATCGATCCCAATGGAGTCAAGAGAGACTGGGAGTCTGCCGAACGCCAGACAAGGCCCACAGAC TCCCCTGTCGATGGAGTCAACATCGTCGCTTTTCTGAATAATATGAACGGCGCTGAGATCCTGCTGGAGAAGCAA TACCGGCCTCCAATCGACCAGGTCGTTATAGAACTCCCTGCGGGATTGATCGATGCCGGAGAGACAATCGAGCAA GCTGCAGTTCGAGAGCTGAAAGAAGAGACAGGGTATATCGGCGTTTCTGATAAAACCACTGGCATTATGTATAAC GATCCCGGCTTCTGCAATGCCAATTTCAACATGGTTTACGTTCAGGTTGACATGTCTCTTCCGGAAAATCAGAAT CCAAAGCCTGATCTCGAGGATAATGAGTTCATTGAATGTTTCACGCTTCCGGTGTCGGAGCTTTCGGCTGAGTTG CAAAAGTTGGAGAGTGAAGGGTATGCGATTGATGCACGAGTGGGATCCATTGCCGAGGGGATTGAGATTGCAAAG AGGTTGAAACTTTGA |
| Transcript | >Pro_DTO377G3_2|g5388.t1 ATGACGCAACTTAAGTCCACATTTCTCTCACGAGAGCCCTTGACCTCCCAAGAAGCCAAATGGAAAAGACTAGTC AAAACGAACTACATCGATCCCAATGGAGTCAAGAGAGACTGGGAGTCTGCCGAACGCCAGACAAGGCCCACAGAC TCCCCTGTCGATGGAGTCAACATCGTCGCTTTTCTGAATAATATGAACGGCGCTGAGATCCTGCTGGAGAAGCAA TACCGGCCTCCAATCGACCAGGTCGTTATAGAACTCCCTGCGGGATTGATCGATGCCGGAGAGACAATCGAGCAA GCTGCAGTTCGAGAGCTGAAAGAAGAGACAGGGTATATCGGCGTTTCTGATAAAACCACTGGCATTATGTATAAC GATCCCGGCTTCTGCAATGCCAATTTCAACATGGTTTACGTTCAGGTTGACATGTCTCTTCCGGAAAATCAGAAT CCAAAGCCTGATCTCGAGGATAATGAGTTCATTGAATGTTTCACGCTTCCGGTGTCGGAGCTTTCGGCTGAGTTG CAAAAGTTGGAGAGTGAAGGGTATGCGATTGATGCACGAGTGGGATCCATTGCCGAGGGGATTGAGATTGCAAAG AGGTTGAAACTTTGA |
| Gene | >Pro_DTO377G3_2|g5388.t1 ATGACGCAACTTAAGTCCACATTTCTCTCACGAGAGCCCTTGGTATGTGCTCCTAACCCGACTATTATATTCTCA GCTACTTACGGCCTTAGACCTCCCAAGAAGCCAAATGGAAAAGACTAGTCAAAACGAACTACATCGATCCCAATG GAGTCAAGAGAGACTGGGAGTCTGCCGAACGCCAGGTACGATTTTCTAACCTATATGTAAATGCAACTGTAAAGA CCTAATCAAATCGTAGACAAGGCCCACAGACTCCCCTGTCGATGGAGTCAACATCGTCGCTTTTCTGAATAATAT GAACGGCGCTGAGATCCTGCTGGAGAAGCAATACCGGCCTCCAATCGACCAGGTCGTTATAGAACTCCCTGCGGG ATTGATCGATGCCGGAGAGACAATCGAGCAAGCTGCAGTTCGAGAGCTGAAAGAAGAGACAGGGTATATCGGCGT TTCTGATAAAACCACTGGCATTATGTATAACGGTTGGTAAGCCCGCTGTTCGTCTTACTGGATATTAGCTGACTT AAGATACTTGTCCAGATCCCGGCTTCTGCAATGCCAATTTCAACATGGTTTACGTTCAGGTTGACATGTCTCTTC CGGAAAATCAGAATCCAAAGCCTGATCTCGAGGATAATGAGTTCATTGAATGTTTCACGCTTCCGGTGTCGGAGC TTTCGGCTGAGTTGCAAAAGTTGGAGAGTGAAGGGTATGCGATTGATGCACGAGTGGGATCCATTGCCGAGGGGA TTGAGATTGCAAAGAGGTTGAAACTTTGA |