© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5382.t1 |
| Gene name | |
| Location | scaffold_12:630777..631737 |
| Strand | + |
| Gene length (bp) | 960 |
| Transcript length (bp) | 960 |
| Coding sequence length (bp) | 960 |
| Protein length (aa) | 320 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00153 | Mito_carr | Mitochondrial carrier protein | 2.7E-09 | 21 | 98 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 6.7E-05 | 112 | 198 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 2.3E-14 | 216 | 315 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 67 | 89 | 22 |
| 2 | 169 | 191 | 22 |
| 3 | 215 | 237 | 22 |
| 4 | 282 | 304 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.39 | 0.01 | 2.78 |
| 5d_25C | Five days - 25 degrees Celsius | 1.09 | 0.00 | 2.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 1.26 | 0.00 | 2.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.43 | 0.00 | 1.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.85 | 0.00 | 2.10 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.74 | 0.00 | 1.60 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.767692 | no |
| 3d_25C | 7d_25C | 0.908375 | no |
| 3d_25C | 7d_15C | 0.568464 | no |
| 3d_25C | 7d_30C | 0.371326 | no |
| 3d_25C | 10d_25C | 0.129711 | no |
| 5d_25C | 7d_25C | 0.877319 | no |
| 5d_25C | 7d_15C | 0.814867 | no |
| 5d_25C | 7d_30C | 0.649600 | no |
| 5d_25C | 10d_25C | 0.257900 | no |
| 7d_25C | 7d_15C | 0.679724 | no |
| 7d_25C | 7d_30C | 0.485456 | no |
| 7d_25C | 10d_25C | 0.176097 | no |
| 7d_15C | 7d_30C | 0.905637 | no |
| 7d_15C | 10d_25C | 0.523559 | no |
| 7d_30C | 10d_25C | 0.567462 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5382.t1 MSTFNGLEITTASRPIPPYQASIVAALASEGAIHPIDTVITRMQSPMYSSVYKHLNGTLSRALFSGLYQGFGPTF FAGTLSSAAFFTAYEASKTAFSNAQAAGYMLGVPRPLIHVASSAVAELLACAIQNPAEVLKQNAQVFQRPVNADR GPSPTMEMLRRFRKYPAGLWAGYSTLVASQLPGMCVTFCLYEMFKEDLLERWKTGKDDIRQQLEATVLGAGAAGG CASWLFVPINVVKTRMRLAVGDQIDSTRSGLKGNPGLPSRIGAFAIARDVLRKEGVAGLFRGSALTCVAAIVGSG LYIGCYEGTKIYLCNYEGS* |
| Coding | >Pro_DTO377G3_2|g5382.t1 ATGTCCACATTCAATGGCTTAGAAATAACAACAGCAAGTCGACCCATCCCACCCTACCAGGCCTCAATAGTCGCC GCACTAGCGAGCGAAGGAGCCATCCACCCAATAGACACAGTAATAACACGCATGCAATCCCCGATGTACAGCAGC GTCTACAAGCACCTAAACGGCACACTGAGCCGCGCACTCTTCAGCGGGCTATACCAAGGCTTCGGGCCAACCTTC TTCGCAGGAACACTCTCATCAGCTGCTTTCTTCACCGCATACGAAGCCTCAAAGACGGCATTTAGCAATGCACAG GCCGCCGGATATATGCTCGGCGTCCCGCGGCCGCTGATCCACGTTGCTAGTAGTGCTGTTGCCGAACTGCTTGCA TGCGCTATCCAGAACCCGGCTGAGGTGTTGAAGCAGAATGCTCAGGTTTTTCAGCGGCCAGTCAATGCAGACAGG GGCCCGTCTCCGACGATGGAGATGTTGCGAAGGTTTCGGAAATATCCGGCTGGGTTGTGGGCCGGGTATAGTACG TTAGTGGCGAGTCAATTGCCGGGGATGTGTGTTACGTTCTGTTTGTATGAGATGTTCAAGGAGGATTTGCTTGAG CGGTGGAAGACGGGGAAAGATGATATTAGACAGCAGCTTGAAGCGACTGTTTTGGGTGCTGGTGCTGCTGGAGGT TGCGCGTCTTGGTTGTTTGTTCCTATCAATGTGGTTAAGACGAGGATGAGGCTTGCGGTTGGTGATCAGATAGAT AGCACTCGGTCAGGTCTCAAGGGAAACCCTGGCTTGCCATCCCGTATCGGGGCATTTGCTATTGCTCGAGATGTG CTGCGGAAGGAGGGTGTAGCTGGGTTATTTCGGGGGTCTGCTTTGACCTGCGTGGCAGCGATTGTGGGGAGTGGA CTTTATATTGGGTGTTATGAGGGGACGAAGATATACTTGTGCAATTATGAAGGCTCATAG |
| Transcript | >Pro_DTO377G3_2|g5382.t1 ATGTCCACATTCAATGGCTTAGAAATAACAACAGCAAGTCGACCCATCCCACCCTACCAGGCCTCAATAGTCGCC GCACTAGCGAGCGAAGGAGCCATCCACCCAATAGACACAGTAATAACACGCATGCAATCCCCGATGTACAGCAGC GTCTACAAGCACCTAAACGGCACACTGAGCCGCGCACTCTTCAGCGGGCTATACCAAGGCTTCGGGCCAACCTTC TTCGCAGGAACACTCTCATCAGCTGCTTTCTTCACCGCATACGAAGCCTCAAAGACGGCATTTAGCAATGCACAG GCCGCCGGATATATGCTCGGCGTCCCGCGGCCGCTGATCCACGTTGCTAGTAGTGCTGTTGCCGAACTGCTTGCA TGCGCTATCCAGAACCCGGCTGAGGTGTTGAAGCAGAATGCTCAGGTTTTTCAGCGGCCAGTCAATGCAGACAGG GGCCCGTCTCCGACGATGGAGATGTTGCGAAGGTTTCGGAAATATCCGGCTGGGTTGTGGGCCGGGTATAGTACG TTAGTGGCGAGTCAATTGCCGGGGATGTGTGTTACGTTCTGTTTGTATGAGATGTTCAAGGAGGATTTGCTTGAG CGGTGGAAGACGGGGAAAGATGATATTAGACAGCAGCTTGAAGCGACTGTTTTGGGTGCTGGTGCTGCTGGAGGT TGCGCGTCTTGGTTGTTTGTTCCTATCAATGTGGTTAAGACGAGGATGAGGCTTGCGGTTGGTGATCAGATAGAT AGCACTCGGTCAGGTCTCAAGGGAAACCCTGGCTTGCCATCCCGTATCGGGGCATTTGCTATTGCTCGAGATGTG CTGCGGAAGGAGGGTGTAGCTGGGTTATTTCGGGGGTCTGCTTTGACCTGCGTGGCAGCGATTGTGGGGAGTGGA CTTTATATTGGGTGTTATGAGGGGACGAAGATATACTTGTGCAATTATGAAGGCTCATAG |
| Gene | >Pro_DTO377G3_2|g5382.t1 ATGTCCACATTCAATGGCTTAGAAATAACAACAGCAAGTCGACCCATCCCACCCTACCAGGCCTCAATAGTCGCC GCACTAGCGAGCGAAGGAGCCATCCACCCAATAGACACAGTAATAACACGCATGCAATCCCCGATGTACAGCAGC GTCTACAAGCACCTAAACGGCACACTGAGCCGCGCACTCTTCAGCGGGCTATACCAAGGCTTCGGGCCAACCTTC TTCGCAGGAACACTCTCATCAGCTGCTTTCTTCACCGCATACGAAGCCTCAAAGACGGCATTTAGCAATGCACAG GCCGCCGGATATATGCTCGGCGTCCCGCGGCCGCTGATCCACGTTGCTAGTAGTGCTGTTGCCGAACTGCTTGCA TGCGCTATCCAGAACCCGGCTGAGGTGTTGAAGCAGAATGCTCAGGTTTTTCAGCGGCCAGTCAATGCAGACAGG GGCCCGTCTCCGACGATGGAGATGTTGCGAAGGTTTCGGAAATATCCGGCTGGGTTGTGGGCCGGGTATAGTACG TTAGTGGCGAGTCAATTGCCGGGGATGTGTGTTACGTTCTGTTTGTATGAGATGTTCAAGGAGGATTTGCTTGAG CGGTGGAAGACGGGGAAAGATGATATTAGACAGCAGCTTGAAGCGACTGTTTTGGGTGCTGGTGCTGCTGGAGGT TGCGCGTCTTGGTTGTTTGTTCCTATCAATGTGGTTAAGACGAGGATGAGGCTTGCGGTTGGTGATCAGATAGAT AGCACTCGGTCAGGTCTCAAGGGAAACCCTGGCTTGCCATCCCGTATCGGGGCATTTGCTATTGCTCGAGATGTG CTGCGGAAGGAGGGTGTAGCTGGGTTATTTCGGGGGTCTGCTTTGACCTGCGTGGCAGCGATTGTGGGGAGTGGA CTTTATATTGGGTGTTATGAGGGGACGAAGATATACTTGTGCAATTATGAAGGCTCATAG |