Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5377.t1
Gene name
Locationscaffold_12:622834..623884
Strand-
Gene length (bp)1050
Transcript length (bp)774
Coding sequence length (bp)774
Protein length (aa) 258

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12710 HAD haloacid dehalogenase-like hydrolase 4.1E-23 18 198

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5377.t1
MGSNALPYMETKPKLIFFTDFDGTITVDDSNDFMIDNIGFGREKRLVLNDQVLDETLSFRDAFREMLDSIKTPYD
QCIDTLLKNMKLDPYFEEFYYWAKENNVPIVILSSGMRPIISALLEKFLGHKPASHLTIISNEPVSRDGKNINSE
GGWQIEYHDDSHFGHDKSLEIKPYARLPDGERPILLYAGDGVSDLSAAAETDLLFAKEGKDLVTYCQRRGMPYTT
FQNWSTILSTSKDILSGKVSVGDVAAKTSLGQ*
Coding >Pro_DTO377G3_2|g5377.t1
ATGGGTTCCAACGCTCTCCCCTACATGGAGACTAAGCCTAAGCTCATCTTTTTCACCGACTTTGATGGGACAATT
ACAGTCGACGACAGCAATGACTTCATGATCGATAACATTGGCTTCGGCCGAGAAAAGCGCCTTGTGTTGAACGAC
CAGGTCCTTGACGAGACTCTGAGCTTCCGGGATGCCTTCCGCGAGATGCTCGATAGCATCAAGACCCCATACGAC
CAGTGCATCGACACGCTGTTAAAGAACATGAAACTGGACCCATACTTCGAGGAATTCTACTACTGGGCTAAGGAA
AACAATGTTCCCATTGTCATCCTTTCATCTGGAATGCGACCCATCATCAGTGCCTTGTTAGAGAAGTTCCTCGGC
CACAAGCCCGCCAGCCACCTCACCATCATTTCCAACGAGCCCGTGAGCCGAGATGGCAAGAATATCAACAGCGAG
GGTGGTTGGCAGATTGAGTACCATGATGACAGCCACTTCGGACATGACAAGTCCCTGGAGATCAAGCCTTATGCC
AGATTGCCCGACGGAGAACGCCCGATTCTTCTATACGCCGGAGACGGTGTTTCCGATTTGTCTGCGGCTGCAGAA
ACTGATCTTCTCTTCGCCAAGGAAGGCAAAGATCTGGTGACCTACTGCCAGCGCAGGGGAATGCCCTACACGACT
TTCCAGAATTGGTCCACAATCCTCTCGACTTCCAAAGACATATTGAGCGGCAAGGTGTCAGTGGGCGATGTGGCT
GCCAAGACTTCGCTCGGCCAGTAG
Transcript >Pro_DTO377G3_2|g5377.t1
ATGGGTTCCAACGCTCTCCCCTACATGGAGACTAAGCCTAAGCTCATCTTTTTCACCGACTTTGATGGGACAATT
ACAGTCGACGACAGCAATGACTTCATGATCGATAACATTGGCTTCGGCCGAGAAAAGCGCCTTGTGTTGAACGAC
CAGGTCCTTGACGAGACTCTGAGCTTCCGGGATGCCTTCCGCGAGATGCTCGATAGCATCAAGACCCCATACGAC
CAGTGCATCGACACGCTGTTAAAGAACATGAAACTGGACCCATACTTCGAGGAATTCTACTACTGGGCTAAGGAA
AACAATGTTCCCATTGTCATCCTTTCATCTGGAATGCGACCCATCATCAGTGCCTTGTTAGAGAAGTTCCTCGGC
CACAAGCCCGCCAGCCACCTCACCATCATTTCCAACGAGCCCGTGAGCCGAGATGGCAAGAATATCAACAGCGAG
GGTGGTTGGCAGATTGAGTACCATGATGACAGCCACTTCGGACATGACAAGTCCCTGGAGATCAAGCCTTATGCC
AGATTGCCCGACGGAGAACGCCCGATTCTTCTATACGCCGGAGACGGTGTTTCCGATTTGTCTGCGGCTGCAGAA
ACTGATCTTCTCTTCGCCAAGGAAGGCAAAGATCTGGTGACCTACTGCCAGCGCAGGGGAATGCCCTACACGACT
TTCCAGAATTGGTCCACAATCCTCTCGACTTCCAAAGACATATTGAGCGGCAAGGTGTCAGTGGGCGATGTGGCT
GCCAAGACTTCGCTCGGCCAGTAG
Gene >Pro_DTO377G3_2|g5377.t1
ATGGGTTCCAACGCTCTCCCCTACATGGAGACTAAGCCTAAGCTCATCTTTTTCACCGACTTTGATGGGACAATT
ACAGTCGACGACAGTAGGTGCTTCCCCGCAAAGTGCTAGTACTTGCATGCTGACTGGAATCGCAGGCAATGACTT
CATGGTATATCGCATCGCTGCCAAATCCTAGATCTTCACTAATGCTATTCAGATCGATAACATTGGCTTCGGCCG
AGAAAAGCGCCTTGTGTTGAACGACCAGGTCCTTGACGAGACTCTGAGCTTCCGGTGAGTGTTAAAGACACTGTC
TGTTCCAAAAGCAAGCCCTAATGAGTCTTTCTTCACTATAGGGATGCCTTCCGCGAGATGCTCGATAGCATCAAG
ACCCCATACGACCAGTGCATCGACACGCTGTTAAAGAACATGAAACTGGACCCATACTTCGAGGAATTCTACTAC
TGGGCTAAGGAAAACAATGTTCCCATTGTCATCCTTTCATCTGGAATGCGACCCATCATCAGTGCCTTGTTAGAG
AAGTTCCTCGGCCACAAGCCCGCCAGCCACCTCACCATCATTTCCAACGAGCCCGTGAGCCGAGATGGCAAGAAT
ATCAACAGCGAGGGTGGTTGGCAGATTGAGTACCATGATGACAGGTAAGCCATGTCAATCCGATCATCATTCCCC
CAGCCTCACTGACAATCACTCACCAGCCACTTCGGACATGACAAGTCCCTGGAGATCAAGCCTTATGCCAGATTG
CCCGACGGAGAACGCCCGATTCTTCTATACGCCGGAGACGGTGTTTCCGATTTGTCTGCGGCTGCAGAAACTGAT
CTTCTCTTCGCCAAGGAAGGCAAAGGTATTTATCTGGGCGAACCGTAACAGATTCCGAGACACTGAACTAACGCC
GTTGCAGATCTGGTGACCTACTGCCAGCGCAGGGGAATGCCCTACACGACTTTCCAGAATTGGTCCACAATCCTC
TCGACTTCCAAAGACATATTGAGCGGCAAGGTGTCAGTGGGCGATGTGGCTGCCAAGACTTCGCTCGGCCAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail