© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5373.t1 |
| Gene name | |
| Location | scaffold_12:615098..616371 |
| Strand | + |
| Gene length (bp) | 1273 |
| Transcript length (bp) | 1179 |
| Coding sequence length (bp) | 1179 |
| Protein length (aa) | 393 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 2.8E-15 | 352 | 386 |
| PF08447 | PAS_3 | PAS fold | 1.8E-09 | 86 | 163 |
| PF08448 | PAS_4 | PAS fold | 7.5E-06 | 69 | 161 |
| PF00989 | PAS | PAS fold | 9.5E-06 | 66 | 163 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0005515 | protein binding | Yes |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0050789 | regulation of biological process | No |
| GO:0005488 | binding | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0003674 | molecular_function | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 67.38 | 40.52 | 94.25 |
| 5d_25C | Five days - 25 degrees Celsius | 64.19 | 38.46 | 89.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.35 | 39.69 | 93.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 70.27 | 42.23 | 98.30 |
| 7d_15C | Seven days - 15 degrees Celsius | 68.32 | 40.89 | 95.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 71.23 | 42.75 | 99.71 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.885511 | no |
| 3d_25C | 7d_25C | 0.967248 | no |
| 3d_25C | 7d_15C | 0.971120 | no |
| 3d_25C | 7d_30C | 0.864720 | no |
| 3d_25C | 10d_25C | 0.904587 | no |
| 5d_25C | 7d_25C | 0.927056 | no |
| 5d_25C | 7d_15C | 0.846277 | no |
| 5d_25C | 7d_30C | 0.725057 | no |
| 5d_25C | 10d_25C | 0.768835 | no |
| 7d_25C | 7d_15C | 0.933069 | no |
| 7d_25C | 7d_30C | 0.820022 | no |
| 7d_25C | 10d_25C | 0.864071 | no |
| 7d_15C | 7d_30C | 0.902809 | no |
| 7d_15C | 10d_25C | 0.936796 | no |
| 7d_30C | 10d_25C | 0.970835 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5373.t1 MALSRPQPYEGMPLPNYQMRSGSNEGHPGYTMEQQHVHASYGGLYGVQGAHHGGYQGVQNDGGWTERVLDEMKDL LLLLTPHGQITYASPSCKSITGRVAKQLEGSALAHYIHQDDQPIFQRDLDESVVANQSFRTHLRFHKTNGTYCLM EAYGHPHLANQDERAGRPTPANGRCTGFFLVCRPYPSKVSQLLDSFLEHKIENARLVQQIAKLKQEEDEEATATR VPYSRSDQDIRAPVAENRFQRFAHSGEISSDPDTTDTVGPNSDESDTSQSTGYFAEPNTREVYSHIDGIEVMTGL NYADGERSHGLSTGVNRGRLIHCDIDITTAADQERNAQEGDRRKRLKAQHVCSDCGTADSPEWRKGPNGPKTLCN ACGLRWSKKEKKRQESA* |
| Coding | >Pro_DTO377G3_2|g5373.t1 ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT GCTTGTGGCTTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA |
| Transcript | >Pro_DTO377G3_2|g5373.t1 ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT GCTTGTGGCTTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA |
| Gene | >Pro_DTO377G3_2|g5373.t1 ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT GCTTGTGGCTGTAAGTATTGTCCCGTCTGTTGTGACCCCCGCTCAGCTTGCTTGTAACCTGTCTACTCTTGGCAC GGAACGAGCTAACCCAATTGTCTTTCTAGTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA |