Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5373.t1
Gene name
Locationscaffold_12:615098..616371
Strand+
Gene length (bp)1273
Transcript length (bp)1179
Coding sequence length (bp)1179
Protein length (aa) 393

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00320 GATA GATA zinc finger 2.8E-15 352 386
PF08447 PAS_3 PAS fold 1.8E-09 86 163
PF08448 PAS_4 PAS fold 7.5E-06 69 161
PF00989 PAS PAS fold 9.5E-06 66 163

GO

GO Term Description Terminal node
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0043565 sequence-specific DNA binding Yes
GO:0005515 protein binding Yes
GO:0031323 regulation of cellular metabolic process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0051252 regulation of RNA metabolic process No
GO:0008150 biological_process No
GO:0060255 regulation of macromolecule metabolic process No
GO:0003677 DNA binding No
GO:0003676 nucleic acid binding No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0010468 regulation of gene expression No
GO:0050789 regulation of biological process No
GO:0005488 binding No
GO:2001141 regulation of RNA biosynthetic process No
GO:0065007 biological regulation No
GO:0003674 molecular_function No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0019222 regulation of metabolic process No
GO:0097159 organic cyclic compound binding No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0031326 regulation of cellular biosynthetic process No
GO:0080090 regulation of primary metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0009889 regulation of biosynthetic process No
GO:0050794 regulation of cellular process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
GATA type zinc finger

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 67.38 40.52 94.25
5d_25C Five days - 25 degrees Celsius 64.19 38.46 89.92
7d_25C Seven days - 25 degrees Celsius 66.35 39.69 93.01
10d_25C Ten days - 25 degrees Celsius 70.27 42.23 98.30
7d_15C Seven days - 15 degrees Celsius 68.32 40.89 95.76
7d_30C Seven days - 30 degrees Celsius 71.23 42.75 99.71

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.885511 no
3d_25C 7d_25C 0.967248 no
3d_25C 7d_15C 0.971120 no
3d_25C 7d_30C 0.864720 no
3d_25C 10d_25C 0.904587 no
5d_25C 7d_25C 0.927056 no
5d_25C 7d_15C 0.846277 no
5d_25C 7d_30C 0.725057 no
5d_25C 10d_25C 0.768835 no
7d_25C 7d_15C 0.933069 no
7d_25C 7d_30C 0.820022 no
7d_25C 10d_25C 0.864071 no
7d_15C 7d_30C 0.902809 no
7d_15C 10d_25C 0.936796 no
7d_30C 10d_25C 0.970835 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5373.t1
MALSRPQPYEGMPLPNYQMRSGSNEGHPGYTMEQQHVHASYGGLYGVQGAHHGGYQGVQNDGGWTERVLDEMKDL
LLLLTPHGQITYASPSCKSITGRVAKQLEGSALAHYIHQDDQPIFQRDLDESVVANQSFRTHLRFHKTNGTYCLM
EAYGHPHLANQDERAGRPTPANGRCTGFFLVCRPYPSKVSQLLDSFLEHKIENARLVQQIAKLKQEEDEEATATR
VPYSRSDQDIRAPVAENRFQRFAHSGEISSDPDTTDTVGPNSDESDTSQSTGYFAEPNTREVYSHIDGIEVMTGL
NYADGERSHGLSTGVNRGRLIHCDIDITTAADQERNAQEGDRRKRLKAQHVCSDCGTADSPEWRKGPNGPKTLCN
ACGLRWSKKEKKRQESA*
Coding >Pro_DTO377G3_2|g5373.t1
ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG
GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT
CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG
CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA
AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC
GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG
GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC
ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG
ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA
GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG
GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG
ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT
AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT
GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT
GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT
GCTTGTGGCTTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA
Transcript >Pro_DTO377G3_2|g5373.t1
ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG
GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT
CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG
CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA
AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC
GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG
GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC
ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG
ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA
GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG
GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG
ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT
AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT
GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT
GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT
GCTTGTGGCTTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA
Gene >Pro_DTO377G3_2|g5373.t1
ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG
GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT
CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG
CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA
AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC
GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG
GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC
ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG
ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA
GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG
GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG
ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT
AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT
GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT
GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT
GCTTGTGGCTGTAAGTATTGTCCCGTCTGTTGTGACCCCCGCTCAGCTTGCTTGTAACCTGTCTACTCTTGGCAC
GGAACGAGCTAACCCAATTGTCTTTCTAGTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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