Protein ID | Pro_DTO377G3_2|g5373.t1 |
Gene name | |
Location | scaffold_12:615098..616371 |
Strand | + |
Gene length (bp) | 1273 |
Transcript length (bp) | 1179 |
Coding sequence length (bp) | 1179 |
Protein length (aa) | 393 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00320 | GATA | GATA zinc finger | 2.8E-15 | 352 | 386 |
PF08447 | PAS_3 | PAS fold | 1.8E-09 | 86 | 163 |
PF08448 | PAS_4 | PAS fold | 7.5E-06 | 69 | 161 |
PF00989 | PAS | PAS fold | 9.5E-06 | 66 | 163 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006355 | regulation of transcription, DNA-templated | Yes |
GO:0043565 | sequence-specific DNA binding | Yes |
GO:0005515 | protein binding | Yes |
GO:0031323 | regulation of cellular metabolic process | No |
GO:1903506 | regulation of nucleic acid-templated transcription | No |
GO:0051252 | regulation of RNA metabolic process | No |
GO:0008150 | biological_process | No |
GO:0060255 | regulation of macromolecule metabolic process | No |
GO:0003677 | DNA binding | No |
GO:0003676 | nucleic acid binding | No |
GO:0010556 | regulation of macromolecule biosynthetic process | No |
GO:0010468 | regulation of gene expression | No |
GO:0050789 | regulation of biological process | No |
GO:0005488 | binding | No |
GO:2001141 | regulation of RNA biosynthetic process | No |
GO:0065007 | biological regulation | No |
GO:0003674 | molecular_function | No |
GO:0051171 | regulation of nitrogen compound metabolic process | No |
GO:0019222 | regulation of metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
GO:0031326 | regulation of cellular biosynthetic process | No |
GO:0080090 | regulation of primary metabolic process | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0009889 | regulation of biosynthetic process | No |
GO:0050794 | regulation of cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 12 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
GATA type zinc finger |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5373.t1 MALSRPQPYEGMPLPNYQMRSGSNEGHPGYTMEQQHVHASYGGLYGVQGAHHGGYQGVQNDGGWTERVLDEMKDL LLLLTPHGQITYASPSCKSITGRVAKQLEGSALAHYIHQDDQPIFQRDLDESVVANQSFRTHLRFHKTNGTYCLM EAYGHPHLANQDERAGRPTPANGRCTGFFLVCRPYPSKVSQLLDSFLEHKIENARLVQQIAKLKQEEDEEATATR VPYSRSDQDIRAPVAENRFQRFAHSGEISSDPDTTDTVGPNSDESDTSQSTGYFAEPNTREVYSHIDGIEVMTGL NYADGERSHGLSTGVNRGRLIHCDIDITTAADQERNAQEGDRRKRLKAQHVCSDCGTADSPEWRKGPNGPKTLCN ACGLRWSKKEKKRQESA* |
Coding | >Pro_DTO377G3_2|g5373.t1 ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT GCTTGTGGCTTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA |
Transcript | >Pro_DTO377G3_2|g5373.t1 ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT GCTTGTGGCTTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA |
Gene | >Pro_DTO377G3_2|g5373.t1 ATGGCTCTGAGTCGCCCACAACCCTATGAGGGTATGCCTCTACCCAACTACCAGATGAGATCGGGCTCCAACGAG GGGCATCCGGGGTACACAATGGAGCAGCAGCACGTCCATGCATCCTACGGTGGGCTCTATGGGGTGCAAGGTGCT CATCACGGGGGATACCAGGGTGTACAAAACGACGGGGGCTGGACAGAACGAGTTCTCGATGAAATGAAGGACCTG CTACTTCTCCTCACACCCCACGGCCAAATCACCTATGCCTCACCATCGTGCAAGAGTATCACCGGCCGTGTCGCA AAACAACTCGAGGGAAGTGCTCTGGCACATTACATTCATCAGGACGACCAGCCAATCTTCCAGCGAGATTTGGAC GAATCGGTGGTTGCGAACCAATCGTTCCGGACCCATTTACGATTCCACAAGACCAACGGCACATATTGTCTCATG GAGGCCTATGGACACCCACATCTCGCAAACCAGGATGAGCGTGCAGGGAGACCCACGCCGGCCAACGGGCGCTGC ACCGGATTTTTCCTCGTGTGCCGACCATATCCCAGCAAGGTCTCTCAATTGCTCGACTCTTTTTTGGAACACAAG ATTGAGAACGCACGTCTAGTCCAACAGATTGCCAAATTGAAGCAAGAAGAAGATGAAGAGGCGACCGCGACTCGA GTGCCCTATTCTAGGAGCGACCAGGATATTCGTGCCCCCGTGGCCGAAAACCGATTCCAACGATTCGCTCATTCG GGGGAAATTTCTAGTGACCCTGATACTACAGACACCGTAGGGCCGAACTCGGATGAATCCGACACGAGCCAATCG ACGGGCTATTTCGCAGAGCCCAATACCCGCGAAGTTTACTCACATATTGACGGCATCGAAGTCATGACCGGTCTT AACTACGCAGACGGCGAGAGATCGCACGGTCTCAGTACAGGTGTTAACCGTGGCCGTCTTATACATTGCGATATT GACATCACCACTGCTGCTGACCAAGAGCGCAACGCTCAGGAAGGCGACCGCCGTAAAAGGCTCAAGGCCCAGCAT GTCTGTAGCGACTGTGGAACAGCAGACTCGCCAGAATGGAGAAAGGGGCCCAACGGGCCTAAGACCTTGTGCAAT GCTTGTGGCTGTAAGTATTGTCCCGTCTGTTGTGACCCCCGCTCAGCTTGCTTGTAACCTGTCTACTCTTGGCAC GGAACGAGCTAACCCAATTGTCTTTCTAGTGCGCTGGTCTAAGAAGGAGAAGAAACGCCAAGAGTCGGCCTAA |