© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5356.t1 |
| Gene name | |
| Location | scaffold_12:561436..563445 |
| Strand | - |
| Gene length (bp) | 2009 |
| Transcript length (bp) | 1887 |
| Coding sequence length (bp) | 1887 |
| Protein length (aa) | 629 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07662 | Nucleos_tra2_C | Na+ dependent nucleoside transporter C-terminus | 8.3E-75 | 400 | 612 |
| PF01773 | Nucleos_tra2_N | Na+ dependent nucleoside transporter N-terminus | 1.4E-23 | 208 | 278 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 44 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 96 | 118 | 22 |
| 2 | 123 | 145 | 22 |
| 3 | 205 | 222 | 17 |
| 4 | 227 | 249 | 22 |
| 5 | 256 | 278 | 22 |
| 6 | 293 | 315 | 22 |
| 7 | 328 | 350 | 22 |
| 8 | 374 | 396 | 22 |
| 9 | 462 | 484 | 22 |
| 10 | 494 | 513 | 19 |
| 11 | 556 | 578 | 22 |
| 12 | 593 | 615 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.68 | 1.17 | 6.19 |
| 5d_25C | Five days - 25 degrees Celsius | 5.36 | 1.91 | 8.80 |
| 7d_25C | Seven days - 25 degrees Celsius | 5.80 | 2.08 | 9.52 |
| 10d_25C | Ten days - 25 degrees Celsius | 4.71 | 1.66 | 7.76 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.75 | 1.47 | 8.02 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.30 | 5.25 | 17.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.364228 | no |
| 3d_25C | 7d_25C | 0.247343 | no |
| 3d_25C | 7d_15C | 0.584857 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.590208 | no |
| 5d_25C | 7d_25C | 0.881453 | no |
| 5d_25C | 7d_15C | 0.812384 | no |
| 5d_25C | 7d_30C | 0.020393 | yes |
| 5d_25C | 10d_25C | 0.797425 | no |
| 7d_25C | 7d_15C | 0.672377 | no |
| 7d_25C | 7d_30C | 0.044177 | yes |
| 7d_25C | 10d_25C | 0.648088 | no |
| 7d_15C | 7d_30C | 0.007779 | yes |
| 7d_15C | 10d_25C | 0.989797 | no |
| 7d_30C | 10d_25C | 0.002761 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5356.t1 MEKTHEVDPAGSQVVHHVDPVLDPEHQHHHAHHHHTAFAEQGRQDEVVYSKDVEFEKGIVPEQTPLDHGRKNSDD EEAGETLPVKRTWYRRVGKQWRHIFHAVVWLLFTGWWIAGLILHRHDIGWLIPFLLYLAITLRIIFFYVPITVVS RPMHWVWGRTAHPFVRLIPEKIRTPSAAALCIAVILVGSFVSEESQDNTRANRAVSLFGMVVFIFGLWLTSRNRK KIVWHTVIVGMLAQFIIALFVLRTTAGYDIFNFISSLATDLLGFAADGVIFLTSEDFYYFDKGFAPQQFFIVSVI SAIIFFVAFVQLLYYFNILQWFIGKFAVFFFWSMRVSGAEAVVAAASPFIGQGESAMLIRPFIAHLTMAELHQIM CSGFATIAGSVLIAYISIGVNPQAMVSACVMSIPASLAVSKLRWPEEEETLTAGRVVVPDDDEHRSANALHAFTS GTWLGLKIAAMIASTLLCIIALIGLVNGLLTWWGRYLNINDPPLTLELIVGYICYPIAFLLGVSRDGDLLKVAQL IGTKLVTNEFVAYDALQNNADYKDLSDRSRLIVTYALCGFANIGSLGNQIGVLSQIAPGRGKDVSRVAFSAMVTG AISTFTSATIAGLLITNEKQYFGTSTTS* |
| Coding | >Pro_DTO377G3_2|g5356.t1 ATGGAGAAAACCCATGAAGTTGATCCAGCAGGATCGCAGGTTGTTCACCATGTAGATCCTGTGCTGGATCCAGAG CATCAGCATCACCATGCTCATCACCACCATACCGCCTTCGCCGAACAGGGACGTCAGGATGAAGTGGTCTACTCG AAAGATGTCGAGTTTGAAAAAGGAATCGTGCCTGAACAAACACCTCTGGACCACGGCAGGAAGAACTCCGACGAT GAGGAAGCCGGCGAGACTCTCCCAGTTAAGCGCACTTGGTATCGTCGTGTGGGAAAACAATGGAGACATATATTC CATGCCGTGGTCTGGCTACTGTTTACCGGTTGGTGGATTGCCGGCCTGATCCTACACCGACATGATATAGGATGG CTCATCCCATTCCTGCTCTATCTTGCCATCACGCTGCGAATAATCTTCTTCTATGTCCCCATTACTGTCGTGTCA AGGCCCATGCACTGGGTCTGGGGGCGTACCGCTCACCCTTTCGTGCGCCTCATTCCCGAGAAGATCAGAACACCC AGTGCCGCCGCGCTATGCATCGCTGTGATTCTTGTTGGCTCGTTCGTTTCCGAAGAATCACAGGATAACACCCGT GCCAACCGTGCAGTCAGTCTGTTCGGTATGGTGGTCTTCATCTTCGGGCTATGGCTCACATCTCGAAACCGCAAG AAGATCGTCTGGCACACTGTCATTGTCGGTATGCTGGCGCAATTCATCATTGCTCTGTTCGTGCTCCGCACCACT GCAGGATACGACATCTTCAACTTCATCTCAAGCCTAGCCACTGATCTGCTCGGTTTCGCCGCCGACGGAGTCATA TTCCTAACCAGCGAGGATTTCTACTACTTTGACAAGGGCTTTGCCCCACAGCAATTCTTCATTGTCAGCGTCATC TCCGCCATCATCTTCTTCGTCGCCTTCGTCCAGCTCTTGTACTACTTCAATATCCTGCAGTGGTTCATTGGCAAG TTCGCCGTCTTCTTCTTCTGGAGCATGCGCGTTTCCGGCGCCGAAGCCGTTGTCGCCGCCGCATCCCCCTTCATC GGCCAGGGTGAATCCGCCATGCTGATCCGTCCCTTCATCGCCCATCTTACCATGGCCGAGCTGCACCAAATCATG TGCTCTGGCTTCGCCACCATCGCCGGAAGTGTCCTGATCGCCTATATCAGCATCGGTGTCAACCCACAGGCAATG GTCAGCGCGTGTGTGATGAGTATCCCCGCTTCACTGGCAGTCTCAAAACTACGTTGGCCCGAAGAGGAAGAAACC CTTACTGCAGGCCGTGTCGTGGTCCCCGATGACGACGAACACCGCTCTGCCAACGCCCTCCACGCATTCACCAGC GGCACCTGGCTCGGTCTGAAGATCGCCGCCATGATCGCATCAACCCTCCTGTGCATCATCGCTCTCATTGGTCTA GTCAACGGCCTCCTCACTTGGTGGGGCCGATACCTGAACATCAACGACCCCCCACTGACCCTCGAGTTGATCGTC GGATACATCTGCTACCCGATTGCCTTCCTCCTCGGTGTCTCCCGGGACGGGGATCTACTCAAGGTTGCCCAACTG ATTGGTACCAAGCTCGTTACCAACGAATTCGTCGCCTACGACGCTCTCCAAAATAACGCAGACTACAAGGATCTC TCCGACCGCTCTCGCCTTATCGTTACATACGCACTGTGTGGATTCGCGAATATCGGCTCCCTCGGTAACCAGATC GGTGTCCTGTCGCAGATTGCACCTGGTCGCGGTAAGGATGTGTCCCGTGTTGCATTTAGTGCTATGGTTACCGGA GCCATTAGCACTTTCACTAGTGCCACGATTGCCGGCTTGTTGATTACCAATGAGAAGCAGTACTTCGGTACCTCC ACGACATCTTAA |
| Transcript | >Pro_DTO377G3_2|g5356.t1 ATGGAGAAAACCCATGAAGTTGATCCAGCAGGATCGCAGGTTGTTCACCATGTAGATCCTGTGCTGGATCCAGAG CATCAGCATCACCATGCTCATCACCACCATACCGCCTTCGCCGAACAGGGACGTCAGGATGAAGTGGTCTACTCG AAAGATGTCGAGTTTGAAAAAGGAATCGTGCCTGAACAAACACCTCTGGACCACGGCAGGAAGAACTCCGACGAT GAGGAAGCCGGCGAGACTCTCCCAGTTAAGCGCACTTGGTATCGTCGTGTGGGAAAACAATGGAGACATATATTC CATGCCGTGGTCTGGCTACTGTTTACCGGTTGGTGGATTGCCGGCCTGATCCTACACCGACATGATATAGGATGG CTCATCCCATTCCTGCTCTATCTTGCCATCACGCTGCGAATAATCTTCTTCTATGTCCCCATTACTGTCGTGTCA AGGCCCATGCACTGGGTCTGGGGGCGTACCGCTCACCCTTTCGTGCGCCTCATTCCCGAGAAGATCAGAACACCC AGTGCCGCCGCGCTATGCATCGCTGTGATTCTTGTTGGCTCGTTCGTTTCCGAAGAATCACAGGATAACACCCGT GCCAACCGTGCAGTCAGTCTGTTCGGTATGGTGGTCTTCATCTTCGGGCTATGGCTCACATCTCGAAACCGCAAG AAGATCGTCTGGCACACTGTCATTGTCGGTATGCTGGCGCAATTCATCATTGCTCTGTTCGTGCTCCGCACCACT GCAGGATACGACATCTTCAACTTCATCTCAAGCCTAGCCACTGATCTGCTCGGTTTCGCCGCCGACGGAGTCATA TTCCTAACCAGCGAGGATTTCTACTACTTTGACAAGGGCTTTGCCCCACAGCAATTCTTCATTGTCAGCGTCATC TCCGCCATCATCTTCTTCGTCGCCTTCGTCCAGCTCTTGTACTACTTCAATATCCTGCAGTGGTTCATTGGCAAG TTCGCCGTCTTCTTCTTCTGGAGCATGCGCGTTTCCGGCGCCGAAGCCGTTGTCGCCGCCGCATCCCCCTTCATC GGCCAGGGTGAATCCGCCATGCTGATCCGTCCCTTCATCGCCCATCTTACCATGGCCGAGCTGCACCAAATCATG TGCTCTGGCTTCGCCACCATCGCCGGAAGTGTCCTGATCGCCTATATCAGCATCGGTGTCAACCCACAGGCAATG GTCAGCGCGTGTGTGATGAGTATCCCCGCTTCACTGGCAGTCTCAAAACTACGTTGGCCCGAAGAGGAAGAAACC CTTACTGCAGGCCGTGTCGTGGTCCCCGATGACGACGAACACCGCTCTGCCAACGCCCTCCACGCATTCACCAGC GGCACCTGGCTCGGTCTGAAGATCGCCGCCATGATCGCATCAACCCTCCTGTGCATCATCGCTCTCATTGGTCTA GTCAACGGCCTCCTCACTTGGTGGGGCCGATACCTGAACATCAACGACCCCCCACTGACCCTCGAGTTGATCGTC GGATACATCTGCTACCCGATTGCCTTCCTCCTCGGTGTCTCCCGGGACGGGGATCTACTCAAGGTTGCCCAACTG ATTGGTACCAAGCTCGTTACCAACGAATTCGTCGCCTACGACGCTCTCCAAAATAACGCAGACTACAAGGATCTC TCCGACCGCTCTCGCCTTATCGTTACATACGCACTGTGTGGATTCGCGAATATCGGCTCCCTCGGTAACCAGATC GGTGTCCTGTCGCAGATTGCACCTGGTCGCGGTAAGGATGTGTCCCGTGTTGCATTTAGTGCTATGGTTACCGGA GCCATTAGCACTTTCACTAGTGCCACGATTGCCGGCTTGTTGATTACCAATGAGAAGCAGTACTTCGGTACCTCC ACGACATCTTAA |
| Gene | >Pro_DTO377G3_2|g5356.t1 ATGGAGAAAACCCATGAAGTTGATCCAGCAGGATCGCAGGTTGTTCACCATGTAGATCCTGTGCTGGATCCAGAG CATCAGCATCACCATGCTCATCACCACCATACCGCCTTCGCCGAACAGGGACGTCAGGATGAAGTGGTCTACTCG AAAGATGTCGAGTTTGAAAAAGGAATCGTGCCTGAACAAACACCTCTGGACCACGGCAGGAAGAACTCCGACGAT GAGGAAGCCGGCGAGACTCTCCCAGTTAAGCGCACTTGGTATCGTCGTGTGGGAAAACAATGGAGACATATATTC CATGCCGTGGTCTGGCTACTGTTTACCGGGTAGGTGAAGACTTCGATCCTACTACTGTATCCTGGACTCAACACG AGGCTCACACATACTCTTCACATAGTTGGTGGATTGCCGGCCTGATCCTACACCGACATGATATAGGATGGCTCA TCCCATTCCTGCTCTATCTTGCCATCACGCTGCGAATAATCTTCTTCTATGTCCCCATTACTGTCGTGTCAAGGC CCATGCACTGGGTCTGGGGGCGTACCGCTCACCCTTTCGTGCGCCTCATTCCCGAGAAGATCAGAACACCCAGTG CCGCCGCGCTATGCATCGCTGTGATTCTTGTTGGCTCGTTCGTTTCCGAAGAATCACAGGATAACACCCGTGCCA ACCGTGCAGTCAGTCTGTTCGGTATGGTGGTCTTCATCTTCGGGCTATGGCTCACATCTCGAAACCGCAAGAAGA TCGTCTGGCACACTGTCATTGTCGGTATGCTGGCGCAATTCATCATTGCTCTGTTCGTGCTCCGCACCACTGCAG GATACGACATCTTCAACTTCATCTCAAGCCTAGCCACTGATCTGCTCGGTTTCGCCGCCGACGGAGTCATATTCC TAACCAGCGAGGATTTCTACTACTTTGACAAGGGCTTTGCCCCACAGCAATTCTTCATTGTCAGCGTCATCTCCG CCATCATCTTCTTCGTCGCCTTCGTCCAGCTCTTGTACTACTTCAATATCCTGCAGTGGTTCATTGGCAAGTTCG CCGTCTTCTTCTTCTGGAGCATGCGCGTTTCCGGCGCCGAAGCCGTTGTCGCCGCCGCATCCCCCTTCATCGGCC AGGGTGAATCCGCCATGCTGATCCGTCCCTTCATCGCCCATCTTACCATGGCCGAGCTGCACCAAATCATGTGCT CTGGCTTCGCCACCATCGCCGGAAGTGTCCTGATCGCCTATATCAGCATCGGTGTCAACCCACAGGCAATGGTCA GCGCGTGTGTGATGAGTATCCCCGCTTCACTGGCAGTCTCAAAACTACGTTGGCCCGAAGAGGAAGAAACCCTTA CTGCAGGCCGTGTCGTGGTCCCCGATGACGACGAACACCGCTCTGCCAACGCCCTCCACGCATTCACCAGCGGCA CCTGGCTCGGTCTGAAGATCGCCGCCATGATCGCATCAACCCTCCTGTGCATCATCGCTCTCATTGGTCTAGTCA ACGGCCTCCTCACTTGGTGGGGCCGATACCTGAACATCAACGACCCCCCACTGACCCTCGAGTTGATCGTCGGAT ACATCTGCTACCCGATTGCCTTCCTCCTCGGTGTCTCCCGGGACGGGGATCTACTCAAGGTTGCCCAACTGATTG GTACCAAGCTCGTTACCGTAAGTTTCCCTTCTTAATAAACAATAATTCCCTCTTCTAATCAGCCACAGAACGAAT TCGTCGCCTACGACGCTCTCCAAAATAACGCAGACTACAAGGATCTCTCCGACCGCTCTCGCCTTATCGTTACAT ACGCACTGTGTGGATTCGCGAATATCGGCTCCCTCGGTAACCAGATCGGTGTCCTGTCGCAGATTGCACCTGGTC GCGGTAAGGATGTGTCCCGTGTTGCATTTAGTGCTATGGTTACCGGAGCCATTAGCACTTTCACTAGTGCCACGA TTGCCGGCTTGTTGATTACCAATGAGAAGCAGTACTTCGGTACCTCCACGACATCTTAA |