© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5320.t1 |
| Gene name | |
| Location | scaffold_12:473842..474442 |
| Strand | - |
| Gene length (bp) | 600 |
| Transcript length (bp) | 537 |
| Coding sequence length (bp) | 537 |
| Protein length (aa) | 179 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12973 | Cupin_7 | ChrR Cupin-like domain | 1.1E-13 | 42 | 130 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 62 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.09 | 1.32 | 12.87 |
| 5d_25C | Five days - 25 degrees Celsius | 6.80 | 1.20 | 12.41 |
| 7d_25C | Seven days - 25 degrees Celsius | 4.77 | 0.56 | 8.97 |
| 10d_25C | Ten days - 25 degrees Celsius | 6.73 | 0.78 | 12.67 |
| 7d_15C | Seven days - 15 degrees Celsius | 10.67 | 2.23 | 19.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 9.93 | 2.37 | 17.50 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.953106 | no |
| 3d_25C | 7d_25C | 0.469055 | no |
| 3d_25C | 7d_15C | 0.420182 | no |
| 3d_25C | 7d_30C | 0.497305 | no |
| 3d_25C | 10d_25C | 0.940967 | no |
| 5d_25C | 7d_25C | 0.522906 | no |
| 5d_25C | 7d_15C | 0.360080 | no |
| 5d_25C | 7d_30C | 0.433391 | no |
| 5d_25C | 10d_25C | 0.987971 | no |
| 7d_25C | 7d_15C | 0.090912 | no |
| 7d_25C | 7d_30C | 0.113395 | no |
| 7d_25C | 10d_25C | 0.563523 | no |
| 7d_15C | 7d_30C | 0.913764 | no |
| 7d_15C | 10d_25C | 0.366608 | no |
| 7d_30C | 10d_25C | 0.439385 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5320.t1 MSKTMEKGDLSTAAYRGPKLPSVPDDLVVTGVLDLECDERFWVPQAKDVWFRPLCFNVSHGYFVNILRVRKSGIL SRHRHTGPVHATVLRGRWHYLEHPWWAEEGGYAFEPPGDIHTLEVPDGVQEMITLFHVTGAYIYVDVDGKALGIE DVFSKLQAARKHYEEVGLGASFADQFVR* |
| Coding | >Pro_DTO377G3_2|g5320.t1 ATGTCCAAGACAATGGAGAAGGGCGATCTTTCCACCGCAGCTTATCGGGGTCCCAAGCTGCCTAGTGTCCCTGAC GACTTAGTAGTCACCGGCGTTCTCGACTTGGAATGTGACGAGCGGTTTTGGGTCCCCCAGGCCAAGGATGTTTGG TTTCGTCCGTTATGCTTCAATGTGTCCCACGGATACTTTGTGAACATCCTACGCGTCAGGAAGAGCGGAATCTTG TCACGCCACCGACACACAGGACCCGTCCATGCTACTGTTCTACGGGGTCGATGGCACTATCTTGAGCACCCTTGG TGGGCCGAGGAAGGTGGATATGCCTTCGAGCCCCCCGGCGACATCCACACTTTGGAAGTGCCCGATGGGGTTCAG GAGATGATTACCTTGTTCCACGTGACGGGCGCGTATATCTACGTGGATGTTGACGGCAAGGCATTGGGAATTGAG GATGTCTTCAGCAAGCTTCAGGCAGCGCGGAAGCACTACGAGGAGGTTGGTCTGGGCGCCAGCTTTGCGGATCAG TTTGTGCGGTAG |
| Transcript | >Pro_DTO377G3_2|g5320.t1 ATGTCCAAGACAATGGAGAAGGGCGATCTTTCCACCGCAGCTTATCGGGGTCCCAAGCTGCCTAGTGTCCCTGAC GACTTAGTAGTCACCGGCGTTCTCGACTTGGAATGTGACGAGCGGTTTTGGGTCCCCCAGGCCAAGGATGTTTGG TTTCGTCCGTTATGCTTCAATGTGTCCCACGGATACTTTGTGAACATCCTACGCGTCAGGAAGAGCGGAATCTTG TCACGCCACCGACACACAGGACCCGTCCATGCTACTGTTCTACGGGGTCGATGGCACTATCTTGAGCACCCTTGG TGGGCCGAGGAAGGTGGATATGCCTTCGAGCCCCCCGGCGACATCCACACTTTGGAAGTGCCCGATGGGGTTCAG GAGATGATTACCTTGTTCCACGTGACGGGCGCGTATATCTACGTGGATGTTGACGGCAAGGCATTGGGAATTGAG GATGTCTTCAGCAAGCTTCAGGCAGCGCGGAAGCACTACGAGGAGGTTGGTCTGGGCGCCAGCTTTGCGGATCAG TTTGTGCGGTAG |
| Gene | >Pro_DTO377G3_2|g5320.t1 ATGTCCAAGGTAAACAGTCGATTACATAAAACGCCTGTGACACTAGCTAACTAACTAATGCCGGTTGTTCAGACA ATGGAGAAGGGCGATCTTTCCACCGCAGCTTATCGGGGTCCCAAGCTGCCTAGTGTCCCTGACGACTTAGTAGTC ACCGGCGTTCTCGACTTGGAATGTGACGAGCGGTTTTGGGTCCCCCAGGCCAAGGATGTTTGGTTTCGTCCGTTA TGCTTCAATGTGTCCCACGGATACTTTGTGAACATCCTACGCGTCAGGAAGAGCGGAATCTTGTCACGCCACCGA CACACAGGACCCGTCCATGCTACTGTTCTACGGGGTCGATGGCACTATCTTGAGCACCCTTGGTGGGCCGAGGAA GGTGGATATGCCTTCGAGCCCCCCGGCGACATCCACACTTTGGAAGTGCCCGATGGGGTTCAGGAGATGATTACC TTGTTCCACGTGACGGGCGCGTATATCTACGTGGATGTTGACGGCAAGGCATTGGGAATTGAGGATGTCTTCAGC AAGCTTCAGGCAGCGCGGAAGCACTACGAGGAGGTTGGTCTGGGCGCCAGCTTTGCGGATCAGTTTGTGCGGTAG |