© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5318.t1 |
| Gene name | |
| Location | scaffold_12:469825..471614 |
| Strand | - |
| Gene length (bp) | 1789 |
| Transcript length (bp) | 1566 |
| Coding sequence length (bp) | 1566 |
| Protein length (aa) | 522 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13520 | AA_permease_2 | Amino acid permease | 1.9E-52 | 25 | 469 |
| PF00324 | AA_permease | Amino acid permease | 8.7E-21 | 47 | 482 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 28 | 50 | 22 |
| 2 | 57 | 79 | 22 |
| 3 | 119 | 141 | 22 |
| 4 | 153 | 170 | 17 |
| 5 | 180 | 199 | 19 |
| 6 | 263 | 285 | 22 |
| 7 | 311 | 333 | 22 |
| 8 | 354 | 376 | 22 |
| 9 | 391 | 413 | 22 |
| 10 | 426 | 448 | 22 |
| 11 | 463 | 482 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 3.00 | 0.76 | 5.23 |
| 5d_25C | Five days - 25 degrees Celsius | 1.79 | 0.25 | 3.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.07 | 0.42 | 3.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 1.79 | 0.32 | 3.26 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.32 | 0.36 | 4.28 |
| 7d_30C | Seven days - 30 degrees Celsius | 2.08 | 0.40 | 3.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.297406 | no |
| 3d_25C | 7d_25C | 0.450140 | no |
| 3d_25C | 7d_15C | 0.650012 | no |
| 3d_25C | 7d_30C | 0.458025 | no |
| 3d_25C | 10d_25C | 0.252055 | no |
| 5d_25C | 7d_25C | 0.822218 | no |
| 5d_25C | 7d_15C | 0.677103 | no |
| 5d_25C | 7d_30C | 0.825695 | no |
| 5d_25C | 10d_25C | 0.994671 | no |
| 7d_25C | 7d_15C | 0.865916 | no |
| 7d_25C | 7d_30C | 0.995697 | no |
| 7d_25C | 10d_25C | 0.812363 | no |
| 7d_15C | 7d_30C | 0.871287 | no |
| 7d_15C | 10d_25C | 0.651290 | no |
| 7d_30C | 10d_25C | 0.807104 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5318.t1 MHSPKFQDDIDLEARGYQRAMPRQFSTFSLVALSFSLTCTWSGTGSSIGISLQEASAAGTIWSLPVAALMTAILS AGVAELASAYPVAGAQYYWAFCLASKDWRAFASYMNGWLSILGWWLASGAACNFIASLILSIVVLWYPDYEIQNW QQWLVYLGIVWLSVALNTWGSQLLSLYNRLNFLVACVTLTATTITLFVCSRTNHAAPKWTLGDATNGTGWKSDGL AFLLAISNAVYAFLGTDCGAHVCEEIHDPARNTPKVILYPVLMGLVTALPFSAACMNAITDLDAVLNSPSGVPLI EIYYQSTGSKGASSVLLALFAFCFFGCTVGNGTTCSRTIWAVSRDNMLPFSEKWAIVNPNFQIPLNALCLSSIIV SLYGLIFLGSSTAFSAMAGAAVIFLQTSCALPQAILLWRGRHIMPERPFSLGRFGFAINLISVLWVILLDILCFL PTEMPVTKENMNYVSVVSVGLTAAVLALYVFSKRGQYLGPRLPNELGQIVDGEELGNMELKDSGEKMSKKE* |
| Coding | >Pro_DTO377G3_2|g5318.t1 ATGCATTCGCCAAAGTTCCAGGATGATATCGATCTTGAAGCTCGCGGATATCAACGTGCGATGCCGCGACAATTC TCCACATTCAGTCTTGTTGCCCTCTCTTTCAGTCTAACGTGCACTTGGTCCGGCACTGGCTCATCAATCGGTATC TCTTTACAGGAGGCCTCGGCCGCTGGCACTATATGGTCTCTTCCAGTGGCTGCTCTCATGACAGCAATTCTGTCG GCTGGCGTGGCGGAATTAGCATCGGCCTATCCAGTCGCCGGTGCTCAGTACTACTGGGCATTCTGTCTTGCATCT AAAGATTGGCGAGCTTTTGCTTCTTACATGAATGGCTGGTTGAGCATTTTGGGGTGGTGGCTAGCCAGCGGTGCA GCCTGCAACTTCATTGCATCCCTAATCCTGTCCATCGTGGTTCTCTGGTATCCAGACTATGAGATCCAGAACTGG CAACAATGGCTCGTCTATCTTGGCATAGTATGGCTCTCGGTCGCACTCAATACCTGGGGCTCACAGCTTCTTTCT CTTTACAATCGTTTGAACTTCCTCGTCGCATGTGTCACTCTCACCGCAACAACGATCACGCTGTTCGTTTGCAGT CGAACAAACCACGCCGCTCCTAAGTGGACACTCGGCGATGCCACAAATGGAACAGGGTGGAAAAGTGATGGGCTC GCCTTCCTACTAGCGATCAGTAACGCCGTGTACGCATTTCTTGGAACGGACTGCGGAGCACATGTCTGCGAAGAG ATCCATGACCCTGCTCGAAACACGCCTAAGGTCATCCTATATCCCGTCCTTATGGGCTTGGTTACTGCGCTTCCC TTTTCTGCCGCTTGCATGAATGCCATTACCGATCTGGACGCAGTTCTGAATTCGCCATCGGGTGTTCCCCTAATC GAGATTTACTATCAAAGTACCGGGTCTAAGGGAGCTTCGTCTGTTCTGTTGGCTTTGTTCGCGTTCTGCTTTTTT GGGTGCACCGTTGGCAATGGCACCACATGCTCGAGAACGATCTGGGCTGTCTCACGTGATAACATGCTTCCATTT AGTGAGAAATGGGCAATCGTCAACCCTAACTTTCAGATCCCACTGAATGCACTCTGTCTGAGTAGCATCATTGTT TCGCTATACGGCCTGATTTTCCTCGGCTCATCAACCGCCTTTTCTGCGATGGCTGGTGCCGCCGTAATCTTCCTG CAAACTTCCTGTGCCCTGCCGCAGGCTATTCTTTTGTGGCGTGGTCGGCACATTATGCCTGAGCGGCCCTTTTCG CTCGGTCGATTTGGGTTTGCCATCAATCTTATCTCGGTGCTATGGGTGATTCTTCTTGACATCCTTTGCTTCCTC CCGACTGAGATGCCGGTGACTAAAGAGAATATGAACTACGTCTCTGTCGTGTCGGTTGGTCTGACGGCGGCTGTA CTCGCACTGTATGTCTTTTCTAAAAGGGGTCAGTATCTTGGACCCCGGCTACCGAATGAACTCGGCCAGATAGTG GATGGAGAGGAACTTGGCAATATGGAACTGAAAGATTCGGGCGAGAAAATGTCTAAGAAGGAGTGA |
| Transcript | >Pro_DTO377G3_2|g5318.t1 ATGCATTCGCCAAAGTTCCAGGATGATATCGATCTTGAAGCTCGCGGATATCAACGTGCGATGCCGCGACAATTC TCCACATTCAGTCTTGTTGCCCTCTCTTTCAGTCTAACGTGCACTTGGTCCGGCACTGGCTCATCAATCGGTATC TCTTTACAGGAGGCCTCGGCCGCTGGCACTATATGGTCTCTTCCAGTGGCTGCTCTCATGACAGCAATTCTGTCG GCTGGCGTGGCGGAATTAGCATCGGCCTATCCAGTCGCCGGTGCTCAGTACTACTGGGCATTCTGTCTTGCATCT AAAGATTGGCGAGCTTTTGCTTCTTACATGAATGGCTGGTTGAGCATTTTGGGGTGGTGGCTAGCCAGCGGTGCA GCCTGCAACTTCATTGCATCCCTAATCCTGTCCATCGTGGTTCTCTGGTATCCAGACTATGAGATCCAGAACTGG CAACAATGGCTCGTCTATCTTGGCATAGTATGGCTCTCGGTCGCACTCAATACCTGGGGCTCACAGCTTCTTTCT CTTTACAATCGTTTGAACTTCCTCGTCGCATGTGTCACTCTCACCGCAACAACGATCACGCTGTTCGTTTGCAGT CGAACAAACCACGCCGCTCCTAAGTGGACACTCGGCGATGCCACAAATGGAACAGGGTGGAAAAGTGATGGGCTC GCCTTCCTACTAGCGATCAGTAACGCCGTGTACGCATTTCTTGGAACGGACTGCGGAGCACATGTCTGCGAAGAG ATCCATGACCCTGCTCGAAACACGCCTAAGGTCATCCTATATCCCGTCCTTATGGGCTTGGTTACTGCGCTTCCC TTTTCTGCCGCTTGCATGAATGCCATTACCGATCTGGACGCAGTTCTGAATTCGCCATCGGGTGTTCCCCTAATC GAGATTTACTATCAAAGTACCGGGTCTAAGGGAGCTTCGTCTGTTCTGTTGGCTTTGTTCGCGTTCTGCTTTTTT GGGTGCACCGTTGGCAATGGCACCACATGCTCGAGAACGATCTGGGCTGTCTCACGTGATAACATGCTTCCATTT AGTGAGAAATGGGCAATCGTCAACCCTAACTTTCAGATCCCACTGAATGCACTCTGTCTGAGTAGCATCATTGTT TCGCTATACGGCCTGATTTTCCTCGGCTCATCAACCGCCTTTTCTGCGATGGCTGGTGCCGCCGTAATCTTCCTG CAAACTTCCTGTGCCCTGCCGCAGGCTATTCTTTTGTGGCGTGGTCGGCACATTATGCCTGAGCGGCCCTTTTCG CTCGGTCGATTTGGGTTTGCCATCAATCTTATCTCGGTGCTATGGGTGATTCTTCTTGACATCCTTTGCTTCCTC CCGACTGAGATGCCGGTGACTAAAGAGAATATGAACTACGTCTCTGTCGTGTCGGTTGGTCTGACGGCGGCTGTA CTCGCACTGTATGTCTTTTCTAAAAGGGGTCAGTATCTTGGACCCCGGCTACCGAATGAACTCGGCCAGATAGTG GATGGAGAGGAACTTGGCAATATGGAACTGAAAGATTCGGGCGAGAAAATGTCTAAGAAGGAGTGA |
| Gene | >Pro_DTO377G3_2|g5318.t1 ATGCATTCGCCAAAGTTCCAGGATGATATCGATCTTGAAGCTCGCGGATATCAACGTGCGATGCCGCGACAATTC TCCACATTCAGTCTTGTTGCCCTCTCTTTCAGTCTAACGTGCACTTGGTCCGGCACTGGCTCATCAATCGGTATC TCTTTACAGGAGGCCTCGGCCGCTGGCACTATATGGTCTCTTCCAGTGGCTGCTCTCATGACAGCAATTCTGTCG GCTGGCGTGGCGGAATTAGCATCGGCCTATCCAGTCGCCGGTGCTCAGTACTACTGGGCATTCTGTCTTGCATCT AAAGATTGGCGAGCTTTTGCTTCTTACATGTTCGTGCTTCCAATACCTATCAGATGGTTGATGCTAACATATTGT GCAGGAATGGCTGGTTGAGCATTTTGGGGTGGTGGCTAGCCAGCGGTGCAGCCTGCAACTTCATTGCATCCCTAA TCCTGTCCATCGTGGTTCTCTGGTATCCAGACTATGAGATCCAGAACTGGCAACAATGGCTCGTCTATCTTGGCA TAGTATGGCTCTCGGTCGCACTCAATACCTGGGGCTCACAGCTTCTTTCTCTTTACAATCGTTTGAACTGTTGGT CAATCCATGCTCTACTTCCTATTGAATATCAATCTAACGACCTTAACCCATCGGCAGTCCTCGTCGCATGTGTCA CTCTCACCGCAACAACGATCACGCTGTTCGTTTGCAGTCGAACAAACCACGCCGCTCCTAAGTGGACACTCGGCG ATGCCACAAATGGAACAGGGTGGAAAAGTGATGGGCTCGCCTTCCTACTAGCGATCAGTAACGCCGTGTACGCAT TTCTTGGAACGGACTGCGGAGCACATGTCTGCGAAGAGATCCATGACCCTGCTCGAAACACGCCTAAGGTCATCC TATATCCCGTCCTTATGGGCTTGGTTACTGCGCTTCCCTTTTCTGCCGCTTGCATGAATGCCATTACCGATCTGG ACGCAGTTCTGAATTCGCCATCGGGTGTTCCCCTAATCGAGATTTACTATCAAAGTACCGGGTCTAAGGGAGCTT CGTCTGTTCTGTTGGCTTTGTTCGCGTTCTGCTTTTTTGGGTGCACCGTTGGCAATGGTGAGTCTACTCCTTTTT GGAAGATTATCCTTGAATACTTGCTTATATCTTGTACTTCAGGCACCACATGCTCGAGAACGATCTGGGCTGTCT CACGTGATAACATGCTTCCATTTAGTGAGAAATGGGCAATCGTCAACCCTAACTTTCAGATCCCACTGAATGCAC TCTGTCTGAGTAGCATCATTGTTTCGGTAAGTATCTCATGTGATAAAGCCTGGTCATTTCTAACCCCGGTTACCA GCTATACGGCCTGATTTTCCTCGGCTCATCAACCGCCTTTTCTGCGATGGCTGGTGCCGCCGTAATCTTCCTGCA AACTTCCTGTGCCCTGCCGCAGGCTATTCTTTTGTGGCGTGGTCGGCACATTATGCCTGAGCGGCCCTTTTCGCT CGGTCGATTTGGGTTTGCCATCAATCTTATCTCGGTGCTATGGGTGATTCTTCTTGACATCCTTTGCTTCCTCCC GACTGAGATGCCGGTGACTAAAGAGAATATGAACTACGTCTCTGTCGTGTCGGTTGGTCTGACGGCGGCTGTACT CGCACTGTATGTCTTTTCTAAAAGGGGTCAGTATCTTGGACCCCGGCTACCGAATGAACTCGGCCAGATAGTGGA TGGAGAGGAACTTGGCAATATGGAACTGAAAGATTCGGGCGAGAAAATGTCTAAGAAGGAGTGA |