Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g530.t1
Gene name
Locationscaffold_01:1358013..1358930
Strand+
Gene length (bp)917
Transcript length (bp)780
Coding sequence length (bp)780
Protein length (aa) 260

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03896 TRAP_alpha Translocon-associated protein (TRAP), alpha subunit 2.3E-14 50 244

GO

GO Term Description Terminal node
GO:0005789 endoplasmic reticulum membrane Yes
GO:0044425 membrane part No
GO:0044424 intracellular part No
GO:0005575 cellular_component No
GO:0044432 endoplasmic reticulum part No
GO:0044422 organelle part No
GO:0016020 membrane No
GO:0044446 intracellular organelle part No
GO:0044464 cell part No
GO:0044444 cytoplasmic part No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 24 0.45

Transmembrane Domains

Domain # Start End Length
1 166 188 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g530.t1
MTRFGFLSLALLSLQAFIGTGFAADTENAEAEAPTLAVSAHASFPASEIFGIKLVNGHPTQALIAISNDEPNPIT
VNFVGGSLRNAEDQAQVVRNLTATRYAIEIPAGEKETISYSFATEMHPQDLQMTLSAIISDSEGRLVPIVAHNGT
VSIVEADTSIFDPQIIFLYFFLLACVSGTGYFFYTVWVAPYFPQKRKSAKTSEKRTQGGSKRAETPVTEETSTGA
AVSSTSAYNADWIPSHHINRPEARKVKGRSKARA*
Coding >Pro_DTO377G3_2|g530.t1
ATGACTCGCTTTGGTTTCCTCTCTTTGGCTCTACTCTCTCTCCAGGCCTTCATTGGCACCGGCTTTGCTGCTGAT
ACTGAGAATGCTGAAGCAGAGGCTCCCACTCTGGCTGTCTCAGCACACGCCTCTTTCCCTGCTTCCGAGATCTTC
GGTATCAAGCTTGTCAACGGTCACCCTACCCAGGCGCTGATCGCCATCTCCAACGATGAGCCGAATCCTATCACG
GTGAACTTTGTCGGGGGTAGCCTTCGAAACGCTGAAGACCAGGCGCAAGTTGTCCGCAACTTGACTGCTACTCGT
TATGCCATTGAGATTCCCGCTGGCGAGAAGGAGACAATCAGCTACAGCTTCGCCACTGAGATGCACCCCCAGGAT
CTCCAGATGACACTTTCTGCCATCATTTCAGACAGTGAGGGCCGCTTGGTTCCTATCGTTGCCCACAATGGCACC
GTTAGCATCGTGGAGGCGGATACCAGCATCTTCGACCCCCAGATCATTTTCCTTTATTTCTTCCTACTGGCCTGT
GTCTCTGGCACTGGTTACTTCTTCTATACCGTTTGGGTCGCTCCCTACTTCCCCCAGAAGCGCAAGTCCGCAAAG
ACCAGCGAGAAGCGCACACAGGGTGGCTCAAAGCGCGCTGAGACCCCAGTCACGGAGGAGACTTCCACCGGCGCT
GCAGTTTCTTCTACCAGCGCCTACAATGCTGATTGGATTCCCTCTCACCACATCAACCGCCCCGAGGCCCGCAAA
GTCAAGGGTCGCTCGAAGGCCCGTGCGTGA
Transcript >Pro_DTO377G3_2|g530.t1
ATGACTCGCTTTGGTTTCCTCTCTTTGGCTCTACTCTCTCTCCAGGCCTTCATTGGCACCGGCTTTGCTGCTGAT
ACTGAGAATGCTGAAGCAGAGGCTCCCACTCTGGCTGTCTCAGCACACGCCTCTTTCCCTGCTTCCGAGATCTTC
GGTATCAAGCTTGTCAACGGTCACCCTACCCAGGCGCTGATCGCCATCTCCAACGATGAGCCGAATCCTATCACG
GTGAACTTTGTCGGGGGTAGCCTTCGAAACGCTGAAGACCAGGCGCAAGTTGTCCGCAACTTGACTGCTACTCGT
TATGCCATTGAGATTCCCGCTGGCGAGAAGGAGACAATCAGCTACAGCTTCGCCACTGAGATGCACCCCCAGGAT
CTCCAGATGACACTTTCTGCCATCATTTCAGACAGTGAGGGCCGCTTGGTTCCTATCGTTGCCCACAATGGCACC
GTTAGCATCGTGGAGGCGGATACCAGCATCTTCGACCCCCAGATCATTTTCCTTTATTTCTTCCTACTGGCCTGT
GTCTCTGGCACTGGTTACTTCTTCTATACCGTTTGGGTCGCTCCCTACTTCCCCCAGAAGCGCAAGTCCGCAAAG
ACCAGCGAGAAGCGCACACAGGGTGGCTCAAAGCGCGCTGAGACCCCAGTCACGGAGGAGACTTCCACCGGCGCT
GCAGTTTCTTCTACCAGCGCCTACAATGCTGATTGGATTCCCTCTCACCACATCAACCGCCCCGAGGCCCGCAAA
GTCAAGGGTCGCTCGAAGGCCCGTGCGTGA
Gene >Pro_DTO377G3_2|g530.t1
ATGACTCGCTTTGGTTTCCTCTCTTTGGCTCTACTCTCTCTCCAGGCCTTCATTGGCACCGGCTTTGCTGCTGTA
TGTGTTTCGTCTTGATTTGCTTCGGGAACCATGTCGCATGACTCAATTGACTAATTGTTTGGGGTTGAACTTTCA
GGATACTGAGAATGCTGAAGCAGAGGCTCCCACTCTGGCTGTCTCAGCACACGCCTCTTTCCCTGCTTCCGAGAT
CTTCGGTATCAAGCTTGTCAACGGTCACCCTACCCAGGCGCTGATCGCCATCTCCAACGATGAGCCGAATCCTAT
CACGGTGAACTTTGTCGGGGGTAGCCTTCGAAACGCTGAAGACCAGGCGCAAGTTGTCCGCAACTTGACTGCTAC
TCGTTATGCCATTGAGATTCCCGCTGGCGAGAAGGAGACAATCAGCTACAGCTTCGCCACTGAGATGCACCCCCA
GGATCTCCAGATGACACTTTCTGCCATCATTTCAGACAGTGAGGGCCGCTTGGTTCCTATCGTTGCCCACAATGG
CACCGTTAGCATCGTGGAGGCGGATACCAGCATCTTCGACCCCCAGATGTAGGACACCCCCCTTTACCCTTGGTG
TGAGAGCAACGAGGCTAACAATTACAATCAGCATTTTCCTTTATTTCTTCCTACTGGCCTGTGTCTCTGGCACTG
GTTACTTCTTCTATACCGTTTGGGTCGCTCCCTACTTCCCCCAGAAGCGCAAGTCCGCAAAGACCAGCGAGAAGC
GCACACAGGGTGGCTCAAAGCGCGCTGAGACCCCAGTCACGGAGGAGACTTCCACCGGCGCTGCAGTTTCTTCTA
CCAGCGCCTACAATGCTGATTGGATTCCCTCTCACCACATCAACCGCCCCGAGGCCCGCAAAGTCAAGGGTCGCT
CGAAGGCCCGTGCGTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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