Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5291.t1
Gene name
Locationscaffold_12:406469..407442
Strand-
Gene length (bp)973
Transcript length (bp)408
Coding sequence length (bp)408
Protein length (aa) 136

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01230 HIT HIT domain 3.4E-22 14 103
PF11969 DcpS_C Scavenger mRNA decapping enzyme C-term binding 2.0E-11 5 110
PF04677 CwfJ_C_1 Protein similar to CwfJ C-terminus 1 1.9E-04 25 107

GO

GO Term Description Terminal node
GO:0003824 catalytic activity Yes
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5291.t1
MSSAACIFCKIIKGDIPSFKLFESEKVFAFLDIQPLSRGHALVIPKFHGAKLTDIPDEDLLEILPVAKKIAKASG
AEDFNILQNNGRIAHQVVDHVHFHMIPKPNEKEGMSIGWPTQETDMAKLKALHEEIQSKM*
Coding >Pro_DTO377G3_2|g5291.t1
ATGTCGTCCGCTGCCTGTATATTCTGCAAGATCATCAAGGGTGATATCCCTTCATTTAAGCTCTTTGAGAGCGAG
AAAGTCTTCGCTTTCCTCGATATCCAGCCGCTGAGCCGTGGCCATGCGCTTGTCATTCCCAAGTTCCACGGCGCA
AAGTTGACCGATATCCCTGACGAGGACCTACTCGAGATCTTGCCCGTCGCGAAGAAGATTGCCAAGGCCAGCGGC
GCCGAGGATTTCAATATCCTGCAGAACAATGGCCGCATTGCGCACCAGGTCGTTGACCATGTCCACTTCCACATG
ATTCCCAAGCCTAACGAGAAGGAGGGTATGTCCATTGGTTGGCCTACACAGGAGACGGATATGGCCAAGCTCAAG
GCTCTTCACGAGGAGATCCAGTCGAAGATGTAA
Transcript >Pro_DTO377G3_2|g5291.t1
ATGTCGTCCGCTGCCTGTATATTCTGCAAGATCATCAAGGGTGATATCCCTTCATTTAAGCTCTTTGAGAGCGAG
AAAGTCTTCGCTTTCCTCGATATCCAGCCGCTGAGCCGTGGCCATGCGCTTGTCATTCCCAAGTTCCACGGCGCA
AAGTTGACCGATATCCCTGACGAGGACCTACTCGAGATCTTGCCCGTCGCGAAGAAGATTGCCAAGGCCAGCGGC
GCCGAGGATTTCAATATCCTGCAGAACAATGGCCGCATTGCGCACCAGGTCGTTGACCATGTCCACTTCCACATG
ATTCCCAAGCCTAACGAGAAGGAGGGTATGTCCATTGGTTGGCCTACACAGGAGACGGATATGGCCAAGCTCAAG
GCTCTTCACGAGGAGATCCAGTCGAAGATGTAA
Gene >Pro_DTO377G3_2|g5291.t1
ATGTCGTCCGCTGCCTGTATATTCTGCAAGATCATCAAGGGTATGTCCATTTCACACTATAGCTACTCCGTACTC
TATCGCAATGTCCAGTCGACACGTCATAGCAGAATATGCGTTGACTGACCTGCTTCCTTGGGGCTATACAGGTGA
TATCCCTTCATTTAAGCTCTTTGAGAGCGAGAAAGTCTTCGCTTTCCTCGATATCCAGCCGCTGAGCCGTGGCCA
TGCGGTGCGTATTACTTCCTACCCCTCTTCCCCGCATCCGGCGTGTTCATTATGGCGGGGAGCGAAGTTGCCAAA
ACTGCCATGATAGCTCCAGCGATTCAAGCACGATAATTCGAGAAGAAGAAAAGTCCAAACTGACAGCATGTGCAG
CTTGTCATTCCCAAGTTCCACGGCGCAAAGTTGACCGATATCCCTGACGAGGACCTACTCGAGATCTTGGTAAGT
CGAGAGAACAACCCAGGACAACGAAGAGGGTGAAGAGGAGAGTCTATGTCTTCGGTCCGATCGGATTCGATTACA
TATCTTCGGGGACCTTGGGGGCAACCCCGCAAGGTCCCTAGAGACCCGGAATTGGATTGGAGAACAGGGATAGCT
AACCAAGATGTACGCCCACAGCCCGTCGCGAAGAAGATTGCCAAGGCCAGCGGCGCCGAGGATTTCAATATCCTG
CAGAACAATGGCCGCATTGCGCACCAGGTCGTTGACCATGTGAGTTTCAGTTGGGGATTCCTCTAATAATTGTGC
CGTGCTAACCAGTCGTCTCTCATAGGTCCACTTCCACATGGTATGCTCTACTATCTTTCGAATTTTTGGTCCTAC
GCTAGAAATCGCCTTTGAATATACACTGACAATATAATAGATTCCCAAGCCTAACGAGAAGGAGGGTATGTCCAT
TGGTTGGCCTACACAGGAGACGGATATGGCCAAGCTCAAGGCTCTTCACGAGGAGATCCAGTCGAAGATGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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