© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5284.t1 |
| Gene name | |
| Location | scaffold_12:385774..386839 |
| Strand | - |
| Gene length (bp) | 1065 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 798 |
| Protein length (aa) | 266 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01694 | Rhomboid | Rhomboid family | 1.7E-16 | 62 | 206 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0004175 | endopeptidase activity | No |
| GO:0008236 | serine-type peptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0008233 | peptidase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 69 | 91 | 22 |
| 3 | 101 | 123 | 22 |
| 4 | 161 | 183 | 22 |
| 5 | 188 | 210 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 174.47 | 106.75 | 242.19 |
| 5d_25C | Five days - 25 degrees Celsius | 189.54 | 116.61 | 262.48 |
| 7d_25C | Seven days - 25 degrees Celsius | 199.70 | 122.75 | 276.66 |
| 10d_25C | Ten days - 25 degrees Celsius | 243.86 | 148.75 | 338.96 |
| 7d_15C | Seven days - 15 degrees Celsius | 235.88 | 144.61 | 327.15 |
| 7d_30C | Seven days - 30 degrees Celsius | 159.88 | 97.22 | 222.54 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.775038 | no |
| 3d_25C | 7d_25C | 0.606210 | no |
| 3d_25C | 7d_15C | 0.165334 | no |
| 3d_25C | 7d_30C | 0.765441 | no |
| 3d_25C | 10d_25C | 0.121403 | no |
| 5d_25C | 7d_25C | 0.868722 | no |
| 5d_25C | 7d_15C | 0.349120 | no |
| 5d_25C | 7d_30C | 0.507204 | no |
| 5d_25C | 10d_25C | 0.274368 | no |
| 7d_25C | 7d_15C | 0.502056 | no |
| 7d_25C | 7d_30C | 0.359310 | no |
| 7d_25C | 10d_25C | 0.415254 | no |
| 7d_15C | 7d_30C | 0.067113 | no |
| 7d_15C | 10d_25C | 0.920394 | no |
| 7d_30C | 10d_25C | 0.045756 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5466 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5284.t1 MTTPAALPPLPFNPGRIRTYLLRLPLFTRLVLLIILAFWLLEFQTIWSVVQWGALIPDEINLGTMYRLNTYPIIH TGFFHAFFNAVAVAPLLERFEAEHGTLTAIALFIGPLSTVPAGLYILIERFILHRNTSVVGASIWVFLLLGSEAI KTYKSHPNFSLGPYKIPTWTSPLFACVVVSILISNVSFLGHLCAILVGYLLGLGYLKVFVPPEKVLRWIEGKLNL LGRLPHYVSVDQKTYGRYGVLPTSNPATVSSNNQTTMSYL* |
| Coding | >Pro_DTO377G3_2|g5284.t1 ATGACGACCCCTGCCGCTTTACCTCCGTTGCCTTTCAATCCGGGTCGGATACGGACATACCTCCTCCGACTACCG CTGTTTACTCGACTGGTGCTGCTGATCATTCTGGCCTTCTGGCTGCTCGAATTCCAGACTATTTGGAGTGTTGTG CAATGGGGCGCTTTGATTCCAGACGAGATCAACCTGGGGACTATGTACCGACTGAACACCTATCCCATCATCCAC ACGGGCTTCTTCCATGCTTTCTTTAATGCCGTGGCAGTTGCACCGCTGTTGGAGCGATTCGAGGCCGAGCATGGC ACTTTGACTGCTATTGCGTTGTTTATTGGACCTCTCTCGACTGTCCCCGCTGGACTTTACATCTTGATTGAGAGG TTTATCCTACACAGAAATACTTCGGTGGTCGGCGCAAGCATTTGGGTTTTCCTGCTTCTCGGCTCTGAAGCCATC AAGACATACAAGTCTCACCCTAACTTCAGTCTTGGCCCGTACAAGATTCCTACCTGGACCTCACCCCTGTTCGCA TGTGTCGTTGTATCCATCCTCATCTCGAACGTGAGCTTCCTTGGTCATCTCTGCGCGATCCTTGTTGGCTATCTC CTTGGCCTCGGATATCTCAAGGTGTTTGTGCCCCCTGAGAAGGTCCTCCGTTGGATCGAGGGCAAGTTGAACCTC CTGGGACGTCTGCCTCACTATGTCTCTGTCGACCAGAAGACCTACGGTCGCTATGGAGTTCTTCCAACCAGCAAC CCTGCCACCGTCAGCAGCAACAATCAAACAACCATGAGCTACTTGTGA |
| Transcript | >Pro_DTO377G3_2|g5284.t1 ATGACGACCCCTGCCGCTTTACCTCCGTTGCCTTTCAATCCGGGTCGGATACGGACATACCTCCTCCGACTACCG CTGTTTACTCGACTGGTGCTGCTGATCATTCTGGCCTTCTGGCTGCTCGAATTCCAGACTATTTGGAGTGTTGTG CAATGGGGCGCTTTGATTCCAGACGAGATCAACCTGGGGACTATGTACCGACTGAACACCTATCCCATCATCCAC ACGGGCTTCTTCCATGCTTTCTTTAATGCCGTGGCAGTTGCACCGCTGTTGGAGCGATTCGAGGCCGAGCATGGC ACTTTGACTGCTATTGCGTTGTTTATTGGACCTCTCTCGACTGTCCCCGCTGGACTTTACATCTTGATTGAGAGG TTTATCCTACACAGAAATACTTCGGTGGTCGGCGCAAGCATTTGGGTTTTCCTGCTTCTCGGCTCTGAAGCCATC AAGACATACAAGTCTCACCCTAACTTCAGTCTTGGCCCGTACAAGATTCCTACCTGGACCTCACCCCTGTTCGCA TGTGTCGTTGTATCCATCCTCATCTCGAACGTGAGCTTCCTTGGTCATCTCTGCGCGATCCTTGTTGGCTATCTC CTTGGCCTCGGATATCTCAAGGTGTTTGTGCCCCCTGAGAAGGTCCTCCGTTGGATCGAGGGCAAGTTGAACCTC CTGGGACGTCTGCCTCACTATGTCTCTGTCGACCAGAAGACCTACGGTCGCTATGGAGTTCTTCCAACCAGCAAC CCTGCCACCGTCAGCAGCAACAATCAAACAACCATGAGCTACTTGTGA |
| Gene | >Pro_DTO377G3_2|g5284.t1 ATGACGACCCCTGCCGCTTTACCTCCGTTGCCTTTCAATCCGGGTCGGATACGGACATACCTCCTCCGACTACCG CTGTTTACTCGACTGGTGCTGCTGATCATTCTGGCCTTCTGGCTGCTCGAATTCCAGACTATTTGGAGTGTTGTG CAATGGGGCGCTTTGATTCCAGACGAGATCAACCTGGGGACTAGTATGTTTGATTTCATGTTGAAAAGCATGTCG GGCGCATGCTGACTTGATGGTGTTACTAGTGTACCGACTGAACACCTATCCCATCATCCACACGGGCTTCTTCCA TGCTTTCTTTAATGCCGTGGCAGTTGCACCGCTGTTGGAGCGATTCGAGGCCGAGCATGGCACTTTGACTGCTAT TGCGTTGTTTATTGGACGTGAGTGCTCTAGAAACGCGACGTTTGCGGCCTTTTGACTAATGTTGAATAATTCAGC TCTCTCGACTGTCCCCGCTGGACTTTACATCTTGATTGAGAGGTTTATCCTACACAGAAATACTTCGGTGGTCGG CGCAAGGTAAGCTTCAGATCACTAGGTTGAATGTTTCGGTAACTAATCTTCAATCCAGCATTTGGGTTTTCCTGC TTCTCGGCTCTGAAGCCATCAAGACATACAAGTCTCACCCTAACTTCAGGTAAGATTCACTTGGAAAACTTGCTC CAATGTTACTAACGCCCTTCAGTCTTGGCCCGTACAAGATTCCTACCTGGACCTCACCCCTGTTCGCATGTGTCG TTGTATCCATCCTCATCTCGAACGTGAGCTTCCTTGGTCATCTCTGCGCGATCCTTGTTGGCTATCTCCGTGAGT TCCCTTATCTGAATTAACCCTTCCCACTGCTAATCGTCGTTAGTTGGCCTCGGATATCTCAAGGTGTTTGTGCCC CCTGAGAAGGTCCTCCGTTGGATCGAGGGCAAGTTGAACCTCCTGGGACGTCTGCCTCACTATGTCTCTGTCGAC CAGAAGACCTACGGTCGCTATGGAGTTCTTCCAACCAGCAACCCTGCCACCGTCAGCAGCAACAATCAAACAACC ATGAGCTACTTGTGA |