© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5279.t1 |
| Gene name | |
| Location | scaffold_12:373541..374304 |
| Strand | + |
| Gene length (bp) | 763 |
| Transcript length (bp) | 711 |
| Coding sequence length (bp) | 711 |
| Protein length (aa) | 237 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13419 | HAD_2 | Haloacid dehalogenase-like hydrolase | 1.1E-11 | 9 | 200 |
| PF00702 | Hydrolase | haloacid dehalogenase-like hydrolase | 7.0E-06 | 7 | 170 |
| PF13242 | Hydrolase_like | HAD-hyrolase-like | 1.6E-05 | 155 | 226 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 621.09 | 368.89 | 873.30 |
| 5d_25C | Five days - 25 degrees Celsius | 605.04 | 357.58 | 852.51 |
| 7d_25C | Seven days - 25 degrees Celsius | 564.56 | 332.33 | 796.80 |
| 10d_25C | Ten days - 25 degrees Celsius | 757.55 | 440.10 | 1075.00 |
| 7d_15C | Seven days - 15 degrees Celsius | 350.49 | 205.21 | 495.76 |
| 7d_30C | Seven days - 30 degrees Celsius | 479.00 | 277.38 | 680.63 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.939313 | no |
| 3d_25C | 7d_25C | 0.755433 | no |
| 3d_25C | 7d_15C | 0.008133 | yes |
| 3d_25C | 7d_30C | 0.286389 | no |
| 3d_25C | 10d_25C | 0.442017 | no |
| 5d_25C | 7d_25C | 0.830039 | no |
| 5d_25C | 7d_15C | 0.013211 | yes |
| 5d_25C | 7d_30C | 0.346084 | no |
| 5d_25C | 10d_25C | 0.368534 | no |
| 7d_25C | 7d_15C | 0.031095 | yes |
| 7d_25C | 7d_30C | 0.543181 | no |
| 7d_25C | 10d_25C | 0.212518 | no |
| 7d_15C | 7d_30C | 0.182419 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.031312 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5279.t1 MCAKILLAFDLYGTLLSTESIQSHLQIHFEPEIARAISEKWRRFQLEYTWRLNSMSRYEDFTEVTRNSLLHALAE NGQSLDDASISQLMTAYDNLSAFPDVAPALDKLSQESLFKPVIFSNGSNVMVSNSVNRCLSQHASIFHGLLTADD IQRYKPSRLFYQRLAEQFGKGLANEDIWIISANPFDIVGSRNMGMRAVWVDRAGSGWKDAVIPDLKPTLVVHSLQ DVTDKIQAYIK* |
| Coding | >Pro_DTO377G3_2|g5279.t1 ATGTGTGCCAAAATACTACTGGCGTTTGATCTGTATGGCACATTGCTGTCCACGGAATCGATTCAAAGTCATCTG CAGATACATTTCGAGCCAGAAATTGCAAGGGCAATTTCGGAAAAATGGAGACGTTTCCAATTGGAATATACTTGG AGGCTGAATAGCATGTCACGTTACGAAGATTTCACCGAGGTCACTCGGAATTCCTTGTTGCATGCACTTGCGGAG AACGGTCAATCGCTTGATGACGCGAGTATATCACAGTTGATGACGGCTTATGATAATCTGTCTGCTTTCCCTGAT GTCGCGCCAGCGTTGGACAAACTGAGCCAGGAAAGCCTTTTCAAGCCGGTTATCTTCTCCAATGGTAGTAATGTA ATGGTGTCGAATTCGGTGAATCGTTGCCTCTCGCAGCATGCCAGCATTTTTCACGGGCTTCTCACGGCAGACGAC ATACAACGTTACAAACCCTCTCGACTATTCTATCAGCGTCTAGCTGAGCAATTCGGCAAGGGACTTGCAAACGAA GATATATGGATTATCAGCGCTAATCCGTTCGATATTGTCGGATCACGCAACATGGGCATGCGTGCGGTTTGGGTC GATCGAGCAGGCTCAGGCTGGAAAGACGCTGTGATCCCGGATCTGAAGCCCACACTGGTCGTTCATAGTCTCCAA GATGTTACCGACAAGATCCAAGCCTATATCAAGTGA |
| Transcript | >Pro_DTO377G3_2|g5279.t1 ATGTGTGCCAAAATACTACTGGCGTTTGATCTGTATGGCACATTGCTGTCCACGGAATCGATTCAAAGTCATCTG CAGATACATTTCGAGCCAGAAATTGCAAGGGCAATTTCGGAAAAATGGAGACGTTTCCAATTGGAATATACTTGG AGGCTGAATAGCATGTCACGTTACGAAGATTTCACCGAGGTCACTCGGAATTCCTTGTTGCATGCACTTGCGGAG AACGGTCAATCGCTTGATGACGCGAGTATATCACAGTTGATGACGGCTTATGATAATCTGTCTGCTTTCCCTGAT GTCGCGCCAGCGTTGGACAAACTGAGCCAGGAAAGCCTTTTCAAGCCGGTTATCTTCTCCAATGGTAGTAATGTA ATGGTGTCGAATTCGGTGAATCGTTGCCTCTCGCAGCATGCCAGCATTTTTCACGGGCTTCTCACGGCAGACGAC ATACAACGTTACAAACCCTCTCGACTATTCTATCAGCGTCTAGCTGAGCAATTCGGCAAGGGACTTGCAAACGAA GATATATGGATTATCAGCGCTAATCCGTTCGATATTGTCGGATCACGCAACATGGGCATGCGTGCGGTTTGGGTC GATCGAGCAGGCTCAGGCTGGAAAGACGCTGTGATCCCGGATCTGAAGCCCACACTGGTCGTTCATAGTCTCCAA GATGTTACCGACAAGATCCAAGCCTATATCAAGTGA |
| Gene | >Pro_DTO377G3_2|g5279.t1 ATGTGTGCCAAAATACTACTGGCGTTTGATCTGTATGGCACATTGCTGTCCACGGAATCGATTCAAAGTCATCTG CAGATACATTTCGAGCCAGAAATTGCAAGGGCAATTTCGGAAAAATGGAGACGTTTCCAATTGGAATATACTTGG AGGCTGAATAGCATGTGTGAGCTGCCTAGAATGTTCCTTGCATCGATAGCAGAGCTGACTCATGATAGCACGTTA CGAAGATTTCACCGAGGTCACTCGGAATTCCTTGTTGCATGCACTTGCGGAGAACGGTCAATCGCTTGATGACGC GAGTATATCACAGTTGATGACGGCTTATGATAATCTGTCTGCTTTCCCTGATGTCGCGCCAGCGTTGGACAAACT GAGCCAGGAAAGCCTTTTCAAGCCGGTTATCTTCTCCAATGGTAGTAATGTAATGGTGTCGAATTCGGTGAATCG TTGCCTCTCGCAGCATGCCAGCATTTTTCACGGGCTTCTCACGGCAGACGACATACAACGTTACAAACCCTCTCG ACTATTCTATCAGCGTCTAGCTGAGCAATTCGGCAAGGGACTTGCAAACGAAGATATATGGATTATCAGCGCTAA TCCGTTCGATATTGTCGGATCACGCAACATGGGCATGCGTGCGGTTTGGGTCGATCGAGCAGGCTCAGGCTGGAA AGACGCTGTGATCCCGGATCTGAAGCCCACACTGGTCGTTCATAGTCTCCAAGATGTTACCGACAAGATCCAAGC CTATATCAAGTGA |