© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5267.t1 |
| Gene name | |
| Location | scaffold_12:343510..344311 |
| Strand | - |
| Gene length (bp) | 801 |
| Transcript length (bp) | 801 |
| Coding sequence length (bp) | 801 |
| Protein length (aa) | 267 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 1.3E-60 | 26 | 263 |
| PF00106 | adh_short | short chain dehydrogenase | 1.8E-41 | 20 | 211 |
| PF08659 | KR | KR domain | 2.0E-11 | 22 | 179 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 27 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 13.21 | 4.68 | 21.74 |
| 5d_25C | Five days - 25 degrees Celsius | 14.48 | 5.23 | 23.73 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.50 | 3.88 | 19.13 |
| 10d_25C | Ten days - 25 degrees Celsius | 9.86 | 3.08 | 16.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.79 | 3.09 | 16.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 18.48 | 7.20 | 29.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.862610 | no |
| 3d_25C | 7d_25C | 0.772514 | no |
| 3d_25C | 7d_15C | 0.491897 | no |
| 3d_25C | 7d_30C | 0.394149 | no |
| 3d_25C | 10d_25C | 0.502822 | no |
| 5d_25C | 7d_25C | 0.598476 | no |
| 5d_25C | 7d_15C | 0.345554 | no |
| 5d_25C | 7d_30C | 0.564057 | no |
| 5d_25C | 10d_25C | 0.350912 | no |
| 7d_25C | 7d_15C | 0.742427 | no |
| 7d_25C | 7d_30C | 0.182833 | no |
| 7d_25C | 10d_25C | 0.755028 | no |
| 7d_15C | 7d_30C | 0.075495 | no |
| 7d_15C | 10d_25C | 0.990668 | no |
| 7d_30C | 10d_25C | 0.080003 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5267.t1 MPIEVPQASSLKDLFSLKDKVVVVTGASGPRGIGYEAARGCAEMGGNIAITYLSRPEGAEANAKALQEEFGVKAK AYKCDTGKWDEVQELVKNVITDFGRIDSFIANAGRTADKGVLEGSVQDWDDVIQADLNSVFYCAKAVGPHFKERG KGSFVITASMSGHIVNYPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYINTGLGDFVPADIQEGWNKM IPMGRQSDPKELKAAYVYFASDASTYTTGADLRIDGGYICR* |
| Coding | >Pro_DTO377G3_2|g5267.t1 ATGCCTATCGAAGTCCCTCAAGCCAGCTCTCTCAAAGACCTCTTCAGTCTTAAAGACAAGGTCGTGGTCGTGACC GGCGCCTCCGGCCCCCGAGGAATCGGCTACGAAGCCGCCCGGGGCTGTGCCGAAATGGGCGGCAACATCGCCATC ACATACTTATCGCGCCCCGAGGGCGCCGAAGCAAACGCCAAAGCCCTGCAAGAGGAGTTCGGAGTCAAAGCCAAG GCCTACAAATGCGACACAGGCAAATGGGACGAAGTGCAAGAGCTGGTCAAAAACGTGATCACCGACTTTGGCAGG ATCGACTCCTTTATCGCGAACGCGGGCCGTACTGCCGATAAAGGTGTTCTCGAGGGCTCGGTTCAGGACTGGGAC GATGTCATCCAGGCCGATCTCAACTCGGTCTTTTACTGTGCGAAGGCTGTTGGCCCCCATTTCAAGGAGCGCGGC AAGGGAAGCTTTGTGATCACCGCTTCGATGTCCGGCCACATTGTCAATTACCCTCAGGAGCAGACTTCGTACAAT GTCGCTAAGGCTGGGTGTATTCACATGGCTCGCTCGCTGGCGAATGAGTGGAGGGATTTTGCTCGTGTCAACAGT ATCTCGCCTGGATACATTAATACCGGTTTGGGAGACTTTGTGCCTGCTGATATTCAGGAGGGTTGGAATAAGATG ATTCCTATGGGTCGCCAGAGTGATCCTAAGGAGTTGAAGGCGGCGTATGTGTACTTTGCCAGTGATGCTAGTACT TACACTACTGGTGCCGATCTGCGCATTGATGGAGGTTACATCTGCCGGTAA |
| Transcript | >Pro_DTO377G3_2|g5267.t1 ATGCCTATCGAAGTCCCTCAAGCCAGCTCTCTCAAAGACCTCTTCAGTCTTAAAGACAAGGTCGTGGTCGTGACC GGCGCCTCCGGCCCCCGAGGAATCGGCTACGAAGCCGCCCGGGGCTGTGCCGAAATGGGCGGCAACATCGCCATC ACATACTTATCGCGCCCCGAGGGCGCCGAAGCAAACGCCAAAGCCCTGCAAGAGGAGTTCGGAGTCAAAGCCAAG GCCTACAAATGCGACACAGGCAAATGGGACGAAGTGCAAGAGCTGGTCAAAAACGTGATCACCGACTTTGGCAGG ATCGACTCCTTTATCGCGAACGCGGGCCGTACTGCCGATAAAGGTGTTCTCGAGGGCTCGGTTCAGGACTGGGAC GATGTCATCCAGGCCGATCTCAACTCGGTCTTTTACTGTGCGAAGGCTGTTGGCCCCCATTTCAAGGAGCGCGGC AAGGGAAGCTTTGTGATCACCGCTTCGATGTCCGGCCACATTGTCAATTACCCTCAGGAGCAGACTTCGTACAAT GTCGCTAAGGCTGGGTGTATTCACATGGCTCGCTCGCTGGCGAATGAGTGGAGGGATTTTGCTCGTGTCAACAGT ATCTCGCCTGGATACATTAATACCGGTTTGGGAGACTTTGTGCCTGCTGATATTCAGGAGGGTTGGAATAAGATG ATTCCTATGGGTCGCCAGAGTGATCCTAAGGAGTTGAAGGCGGCGTATGTGTACTTTGCCAGTGATGCTAGTACT TACACTACTGGTGCCGATCTGCGCATTGATGGAGGTTACATCTGCCGGTAA |
| Gene | >Pro_DTO377G3_2|g5267.t1 ATGCCTATCGAAGTCCCTCAAGCCAGCTCTCTCAAAGACCTCTTCAGTCTTAAAGACAAGGTCGTGGTCGTGACC GGCGCCTCCGGCCCCCGAGGAATCGGCTACGAAGCCGCCCGGGGCTGTGCCGAAATGGGCGGCAACATCGCCATC ACATACTTATCGCGCCCCGAGGGCGCCGAAGCAAACGCCAAAGCCCTGCAAGAGGAGTTCGGAGTCAAAGCCAAG GCCTACAAATGCGACACAGGCAAATGGGACGAAGTGCAAGAGCTGGTCAAAAACGTGATCACCGACTTTGGCAGG ATCGACTCCTTTATCGCGAACGCGGGCCGTACTGCCGATAAAGGTGTTCTCGAGGGCTCGGTTCAGGACTGGGAC GATGTCATCCAGGCCGATCTCAACTCGGTCTTTTACTGTGCGAAGGCTGTTGGCCCCCATTTCAAGGAGCGCGGC AAGGGAAGCTTTGTGATCACCGCTTCGATGTCCGGCCACATTGTCAATTACCCTCAGGAGCAGACTTCGTACAAT GTCGCTAAGGCTGGGTGTATTCACATGGCTCGCTCGCTGGCGAATGAGTGGAGGGATTTTGCTCGTGTCAACAGT ATCTCGCCTGGATACATTAATACCGGTTTGGGAGACTTTGTGCCTGCTGATATTCAGGAGGGTTGGAATAAGATG ATTCCTATGGGTCGCCAGAGTGATCCTAAGGAGTTGAAGGCGGCGTATGTGTACTTTGCCAGTGATGCTAGTACT TACACTACTGGTGCCGATCTGCGCATTGATGGAGGTTACATCTGCCGGTAA |