Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5258.t1
Gene name
Locationscaffold_12:320364..321244
Strand+
Gene length (bp)880
Transcript length (bp)705
Coding sequence length (bp)705
Protein length (aa) 235

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF18265 Nas2_N Nas2 N_terminal domain 9.6E-29 29 106
PF17820 PDZ_6 PDZ domain 6.5E-11 143 198
PF13180 PDZ_2 PDZ domain 3.4E-08 140 209
PF00595 PDZ PDZ domain 1.0E-05 134 192

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 21 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5258.t1
MNDNIHAPTVASGPTSGVTPRDLSKLSMPDLMQEKERIEAELSALSSVLQSHGVRMTSSLTTFDGFPRDDIDIAQ
VRTTRVRIIHLRNDHKEVMHLLEKGVHAHFANLQNTQDAGPTTNGTNVPPAVQSLTNNTVLGTPFAKVNSVVSGS
PADQAGLKAGDAIRSFGNINWLNHERLAKVAQVVKDNEGRVVLVKVSRKTDETNTDTTVDLDLQLTPRQNWGGRG
LLGCHLVPL*
Coding >Pro_DTO377G3_2|g5258.t1
ATGAACGATAACATTCACGCCCCAACTGTTGCCTCTGGACCGACGTCCGGGGTCACTCCCCGCGATCTGTCCAAA
CTGTCGATGCCAGATCTGATGCAGGAGAAAGAACGCATCGAGGCGGAATTGTCAGCTCTTAGTAGCGTCCTCCAG
TCGCATGGAGTCCGCATGACTTCGTCTCTCACAACCTTCGACGGTTTCCCCCGTGATGATATTGACATCGCGCAA
GTACGCACAACGCGCGTGCGCATTATTCACCTACGGAACGACCACAAGGAGGTGATGCACCTCCTCGAGAAAGGT
GTCCATGCGCATTTCGCCAACCTACAAAATACGCAAGACGCTGGCCCAACCACAAATGGCACTAACGTCCCACCG
GCTGTGCAATCGTTGACAAATAACACCGTGTTGGGGACACCGTTCGCCAAGGTCAATAGCGTGGTTTCGGGAAGT
CCAGCAGACCAAGCGGGACTGAAAGCTGGCGATGCAATTCGAAGTTTTGGGAATATAAATTGGCTGAACCATGAG
CGCCTTGCTAAGGTAGCTCAAGTGGTCAAAGACAACGAAGGGCGGGTGGTATTGGTCAAAGTCTCTCGGAAGACT
GATGAAACGAACACTGACACCACAGTGGACTTGGACCTCCAGCTCACCCCTCGGCAAAATTGGGGCGGCCGTGGC
CTGCTAGGATGTCACTTGGTTCCCTTATAA
Transcript >Pro_DTO377G3_2|g5258.t1
ATGAACGATAACATTCACGCCCCAACTGTTGCCTCTGGACCGACGTCCGGGGTCACTCCCCGCGATCTGTCCAAA
CTGTCGATGCCAGATCTGATGCAGGAGAAAGAACGCATCGAGGCGGAATTGTCAGCTCTTAGTAGCGTCCTCCAG
TCGCATGGAGTCCGCATGACTTCGTCTCTCACAACCTTCGACGGTTTCCCCCGTGATGATATTGACATCGCGCAA
GTACGCACAACGCGCGTGCGCATTATTCACCTACGGAACGACCACAAGGAGGTGATGCACCTCCTCGAGAAAGGT
GTCCATGCGCATTTCGCCAACCTACAAAATACGCAAGACGCTGGCCCAACCACAAATGGCACTAACGTCCCACCG
GCTGTGCAATCGTTGACAAATAACACCGTGTTGGGGACACCGTTCGCCAAGGTCAATAGCGTGGTTTCGGGAAGT
CCAGCAGACCAAGCGGGACTGAAAGCTGGCGATGCAATTCGAAGTTTTGGGAATATAAATTGGCTGAACCATGAG
CGCCTTGCTAAGGTAGCTCAAGTGGTCAAAGACAACGAAGGGCGGGTGGTATTGGTCAAAGTCTCTCGGAAGACT
GATGAAACGAACACTGACACCACAGTGGACTTGGACCTCCAGCTCACCCCTCGGCAAAATTGGGGCGGCCGTGGC
CTGCTAGGATGTCACTTGGTTCCCTTATAA
Gene >Pro_DTO377G3_2|g5258.t1
ATGAACGATAACATTCACGCCCCAACTGTTGCCTCTGGACCGACGTCCGGGGTCACTCCCCGCGATCTGTCCAAA
CTGTCGATGCCAGATCTGATGCAGGAGAAAGAACGCATCGAGGCGGAATTGTCAGCTCTTAGTAGCGTCCTCCAG
TCGGTGAGATTTCTGGCCTAGAAGTTCCCATCGCGGTTTCTAACAAGCATTTCGTGTTAGCATGGAGTCCGCATG
ACTTCGTCTCTCACAACCTTCGACGGTTTCCCCCGTGATGATATTGACATCGCGCAAGGTACGCCCTTACCATAC
CCCAGTCAATCGGGACATATAGCTGAAGGGAGAATGTAGTACGCACAACGCGCGTGCGCATTATTCACCTACGGA
ACGACCACAAGGAGGTGATGCACCTCCTCGAGAAAGGTGTCCATGCGCATTTCGCCAACCTACAAAATACGCAAG
ACGCTGGCCCAACCACAAATGGCACTAACGTCCCACCGGCTGTGCAATCGTTGACAAATAACACCGTGTTGGGGA
CACCGTTCGCCAAGGTCAATAGCGTGGTTTCGGGAAGTCCAGCAGACCAAGCGGGACTGAAAGCTGGCGATGCAA
TTCGAAGTTTTGGGAATATAAATTGGCTGAACCATGAGCGCCTTGCTAAGGTAGCTCAAGTGGTCAAAGACAACG
AAGGGGTACGTTCGGTTCTCCCACGCTCTGTCAAAATACCCATATATCTGATTCACTTCCTCTACAGCGGGTGGT
ATTGGTCAAAGTCTCTCGGAAGACTGATGAAACGAACACTGACACCACAGTGGACTTGGACCTCCAGCTCACCCC
TCGGCAAAATTGGGGCGGCCGTGGCCTGCTAGGATGTCACTTGGTTCCCTTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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