© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5222.t1 |
| Gene name | |
| Location | scaffold_12:227234..228750 |
| Strand | - |
| Gene length (bp) | 1516 |
| Transcript length (bp) | 1284 |
| Coding sequence length (bp) | 1284 |
| Protein length (aa) | 428 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00331 | Glyco_hydro_10 | Glycosyl hydrolase family 10 | 3.0E-101 | 26 | 336 |
| PF00734 | CBM_1 | Fungal cellulose binding domain | 3.8E-12 | 396 | 423 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030248 | cellulose binding | Yes |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005576 | extracellular region | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0030247 | polysaccharide binding | No |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 22 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 29.20 | 15.44 | 42.97 |
| 5d_25C | Five days - 25 degrees Celsius | 20.47 | 9.73 | 31.20 |
| 7d_25C | Seven days - 25 degrees Celsius | 15.61 | 6.96 | 24.26 |
| 10d_25C | Ten days - 25 degrees Celsius | 11.19 | 4.55 | 17.83 |
| 7d_15C | Seven days - 15 degrees Celsius | 17.53 | 7.78 | 27.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 26.55 | 13.18 | 39.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.221214 | no |
| 3d_25C | 7d_25C | 0.024657 | yes |
| 3d_25C | 7d_15C | 0.074263 | no |
| 3d_25C | 7d_30C | 0.802993 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.419493 | no |
| 5d_25C | 7d_15C | 0.684778 | no |
| 5d_25C | 7d_30C | 0.414269 | no |
| 5d_25C | 10d_25C | 0.035668 | yes |
| 7d_25C | 7d_15C | 0.785241 | no |
| 7d_25C | 7d_30C | 0.069586 | no |
| 7d_25C | 10d_25C | 0.340824 | no |
| 7d_15C | 7d_30C | 0.176783 | no |
| 7d_15C | 10d_25C | 0.170903 | no |
| 7d_30C | 10d_25C | 0.001804 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5222.t1 MVHFSTIALALASVLPQLTNASGLNTAAVAKGKLYFGSATDNSELTDTAYLAQLSNTDDFGQITPGNAQKWDATE PSQNTFSYTKGDVIANLAATNGQKLRCHTLVWYSQLPSWVSSGSWTNATLLAAMKNHITNVVTHYKGKCYAWDVA NEALNEDGTYRDNVFYQYIGEAYLPIAFATAAAADPDAKLYYNDYNIESAGSKATGAQRIVKLVQQYGAKIDGVG LQAHFIVGSTPSQSAQTTNLAAFTALGVEVAYTELDIRMTLPSTSALLAQQSTDYQNTVAACVANAKCVGVTIWD YTDKYSWVPSTFSGQGAACPWDANLVKKPAYDGILAALGGTASGTSTSSTATVTSTTTSATTTTTSATTTTTSAT TTTTSATTTTTSSGSTTGVPLYGQCGGLGWTGSTTCTSGTCKYSNDWYSQCL* |
| Coding | >Pro_DTO377G3_2|g5222.t1 ATGGTTCACTTCTCCACTATTGCCCTGGCACTGGCCAGTGTTCTTCCTCAGCTGACCAATGCATCCGGATTGAAC ACCGCTGCTGTCGCAAAGGGAAAGCTATACTTCGGATCAGCTACTGATAACTCCGAGTTGACGGATACCGCATAC CTTGCCCAGCTGAGCAACACAGACGACTTTGGACAGATTACACCCGGTAATGCGCAGAAGTGGGATGCAACCGAA CCGTCTCAGAACACCTTTTCCTATACCAAAGGAGATGTCATTGCCAACCTCGCTGCTACGAATGGCCAAAAGCTG CGATGCCATACTCTAGTTTGGTATAGCCAGTTGCCCAGCTGGGTCTCAAGCGGCTCCTGGACGAACGCGACTCTG CTTGCCGCCATGAAGAACCACATCACCAACGTGGTGACTCACTACAAAGGCAAATGCTATGCTTGGGATGTTGCC AACGAAGCTCTCAACGAGGACGGCACCTACCGTGACAACGTCTTCTACCAATACATCGGCGAGGCATACCTTCCC ATCGCATTCGCTACAGCAGCCGCCGCAGACCCAGACGCCAAGCTCTACTACAACGACTACAACATCGAATCCGCC GGGTCCAAGGCAACAGGTGCCCAGAGAATCGTCAAGCTGGTACAGCAGTACGGCGCCAAGATTGACGGTGTCGGT CTACAAGCACATTTTATCGTCGGAAGTACCCCTAGCCAGAGCGCGCAGACTACCAATCTGGCCGCGTTCACGGCC CTGGGCGTCGAAGTTGCCTATACTGAGCTTGATATCCGGATGACTCTCCCGTCGACTTCGGCCCTGCTTGCGCAG CAGTCGACCGATTACCAGAACACCGTTGCGGCTTGTGTGGCAAATGCTAAGTGTGTGGGCGTTACTATTTGGGAC TACACGGACAAGTACTCGTGGGTTCCTAGTACATTCTCTGGTCAGGGTGCTGCGTGTCCTTGGGATGCGAATCTG GTGAAGAAGCCGGCTTATGATGGTATCTTGGCTGCTTTGGGTGGTACAGCTTCTGGTACTTCCACTTCCTCTACG GCTACCGTTACCAGCACGACTACCTCTGCTACCACCACGACTACCTCTGCTACCACCACGACTACCTCTGCTACC ACCACGACTACCTCTGCTACCACCACGACTACCAGCTCTGGTAGCACTACTGGTGTCCCTCTCTATGGTCAGTGT GGTGGGTTGGGCTGGACTGGAAGCACAACTTGCACAAGTGGAACCTGTAAATACTCCAATGACTGGTACTCGCAG TGCCTATAG |
| Transcript | >Pro_DTO377G3_2|g5222.t1 ATGGTTCACTTCTCCACTATTGCCCTGGCACTGGCCAGTGTTCTTCCTCAGCTGACCAATGCATCCGGATTGAAC ACCGCTGCTGTCGCAAAGGGAAAGCTATACTTCGGATCAGCTACTGATAACTCCGAGTTGACGGATACCGCATAC CTTGCCCAGCTGAGCAACACAGACGACTTTGGACAGATTACACCCGGTAATGCGCAGAAGTGGGATGCAACCGAA CCGTCTCAGAACACCTTTTCCTATACCAAAGGAGATGTCATTGCCAACCTCGCTGCTACGAATGGCCAAAAGCTG CGATGCCATACTCTAGTTTGGTATAGCCAGTTGCCCAGCTGGGTCTCAAGCGGCTCCTGGACGAACGCGACTCTG CTTGCCGCCATGAAGAACCACATCACCAACGTGGTGACTCACTACAAAGGCAAATGCTATGCTTGGGATGTTGCC AACGAAGCTCTCAACGAGGACGGCACCTACCGTGACAACGTCTTCTACCAATACATCGGCGAGGCATACCTTCCC ATCGCATTCGCTACAGCAGCCGCCGCAGACCCAGACGCCAAGCTCTACTACAACGACTACAACATCGAATCCGCC GGGTCCAAGGCAACAGGTGCCCAGAGAATCGTCAAGCTGGTACAGCAGTACGGCGCCAAGATTGACGGTGTCGGT CTACAAGCACATTTTATCGTCGGAAGTACCCCTAGCCAGAGCGCGCAGACTACCAATCTGGCCGCGTTCACGGCC CTGGGCGTCGAAGTTGCCTATACTGAGCTTGATATCCGGATGACTCTCCCGTCGACTTCGGCCCTGCTTGCGCAG CAGTCGACCGATTACCAGAACACCGTTGCGGCTTGTGTGGCAAATGCTAAGTGTGTGGGCGTTACTATTTGGGAC TACACGGACAAGTACTCGTGGGTTCCTAGTACATTCTCTGGTCAGGGTGCTGCGTGTCCTTGGGATGCGAATCTG GTGAAGAAGCCGGCTTATGATGGTATCTTGGCTGCTTTGGGTGGTACAGCTTCTGGTACTTCCACTTCCTCTACG GCTACCGTTACCAGCACGACTACCTCTGCTACCACCACGACTACCTCTGCTACCACCACGACTACCTCTGCTACC ACCACGACTACCTCTGCTACCACCACGACTACCAGCTCTGGTAGCACTACTGGTGTCCCTCTCTATGGTCAGTGT GGTGGGTTGGGCTGGACTGGAAGCACAACTTGCACAAGTGGAACCTGTAAATACTCCAATGACTGGTACTCGCAG TGCCTATAG |
| Gene | >Pro_DTO377G3_2|g5222.t1 ATGGTTCACTTCTCCACTATTGCCCTGGCACTGGCCAGTGTTCTTCCTCAGCTGTATGGTTGATCTTCCAATTCC CAGCACGGTGGCAGTTGATAGTGACTAATGCCCATTCTCAATAGGACCAATGCATCCGGATTGAACACCGCTGCT GTCGCAAAGGGAAAGCTATACTTCGGATCAGCTACTGATAACTCCGAGTTGACGGATACCGCATACCTTGCCCAG CTGAGCAACACAGACGACTTTGGACAGATTACACCCGGTAATGCGCAGAAGGTTGGGCTGGTCTTAGCGTAATAT TCCAACATCGCTAATCGTCGCTAGTGGGATGCAACCGAACCGTCTCAGAACACCTTTTCCTATACCAAAGGAGAT GTCATTGCCAACCTCGCTGCTACGAATGGCCAAAAGCTGCGATGCCATACTCTAGTTTGGTATAGCCAGTTGCCC AGCTGGGGTAAGTTCTGTTATCTCATGTCTTTCAATGCGGGAATATCCATCTAATGATAACCAGTCTCAAGCGGC TCCTGGACGAACGCGACTCTGCTTGCCGCCATGAAGAACCACATCACCAACGTGGTGACTCACTACAAAGGCAAA TGCTATGCTTGGGATGTTGCCAACGAAGGTCAGTGCCGAACTAGGAACGAATCATATCATCACAAGTCGCCTAAT TTATGGACTACTAGCTCTCAACGAGGACGGCACCTACCGTGACAACGTCTTCTACCAATACATCGGCGAGGCATA CCTTCCCATCGCATTCGCTACAGCAGCCGCCGCAGACCCAGACGCCAAGCTCTACTACAACGACTACAACATCGA ATCCGCCGGGTCCAAGGCAACAGGTGCCCAGAGAATCGTCAAGCTGGTACAGCAGTACGGCGCCAAGATTGACGG TGTCGGTCTACAAGCACATTTTATCGTCGGAAGTACCCCTAGCCAGAGCGCGCAGACTACCAATCTGGCCGCGTT CACGGCCCTGGGCGTCGAAGTTGCCTATACTGAGCTTGATATCCGGATGACTCTCCCGTCGACTTCGGCCCTGCT TGCGCAGCAGTCGACCGATTACCAGAACACCGTTGCGGCTTGTGTGGCAAATGCTAAGTGTGTGGGCGTTACTAT TTGGGACTACACGGACAAGTACTCGTGGGTTCCTAGTACATTCTCTGGTCAGGGTGCTGCGTGTCCTTGGGATGC GAATCTGGTGAAGAAGCCGGCTTATGATGGTATCTTGGCTGCTTTGGGTGGTACAGCTTCTGGTACTTCCACTTC CTCTACGGCTACCGTTACCAGCACGACTACCTCTGCTACCACCACGACTACCTCTGCTACCACCACGACTACCTC TGCTACCACCACGACTACCTCTGCTACCACCACGACTACCAGCTCTGGTAGCACTACTGGTGTCCCTCTCTATGG TCAGTGTGGTGGGTTGGGCTGGACTGGAAGCACAACTTGCACAAGTGGAACCTGTAAATACTCCAATGACTGGTA CTCGCAGTGCCTATAG |