© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5214.t1 |
| Gene name | |
| Location | scaffold_12:200387..201850 |
| Strand | - |
| Gene length (bp) | 1463 |
| Transcript length (bp) | 1041 |
| Coding sequence length (bp) | 1041 |
| Protein length (aa) | 347 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02453 | Reticulon | Reticulon | 4.1E-24 | 66 | 222 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 74 | 96 | 22 |
| 2 | 103 | 122 | 19 |
| 3 | 165 | 187 | 22 |
| 4 | 189 | 211 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 249.89 | 152.48 | 347.30 |
| 5d_25C | Five days - 25 degrees Celsius | 368.60 | 219.97 | 517.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 379.42 | 224.13 | 534.71 |
| 10d_25C | Ten days - 25 degrees Celsius | 496.51 | 290.52 | 702.50 |
| 7d_15C | Seven days - 15 degrees Celsius | 344.97 | 204.92 | 485.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 369.98 | 221.17 | 518.79 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.075626 | no |
| 3d_25C | 7d_25C | 0.050536 | no |
| 3d_25C | 7d_15C | 0.153159 | no |
| 3d_25C | 7d_30C | 0.074263 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.933893 | no |
| 5d_25C | 7d_15C | 0.837179 | no |
| 5d_25C | 7d_30C | 0.992336 | no |
| 5d_25C | 10d_25C | 0.206506 | no |
| 7d_25C | 7d_15C | 0.749303 | no |
| 7d_25C | 7d_30C | 0.943742 | no |
| 7d_25C | 10d_25C | 0.263090 | no |
| 7d_15C | 7d_30C | 0.823867 | no |
| 7d_15C | 10d_25C | 0.103139 | no |
| 7d_30C | 10d_25C | 0.212585 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5214.t1 MASGDVTYPNTGSIRDVITKGPIVNNVKSEASRTSDEFRDLKNSRVTPSNTTADGQPLTHYHSLMYSLLSWEQPR ATAVSYASMICFIFAARYMPLLRWAFKFLYMSLGVTATVEIAGHLILKRGIASGFRPRRYYTVPKEVIEGVLEDL EQLVDFFLIEFQRILFAENVLHTVFAFNAAFIGYWLLRFLPFWGVALIAVTTTYFTPLIYISNREFIDEQITNYQ EIINSQTNQLRDMAGERTSHATDLVKQYVGEYSSKAQGYIAHRRSASRETKLASPIKRETVEPAANFTAPVAKPA VEPVIKHEDFPEAPKAAPVAQALESGIVASVEPAEQAKGREPLLAI* |
| Coding | >Pro_DTO377G3_2|g5214.t1 ATGGCTTCTGGTGACGTGACCTACCCTAACACGGGCAGCATCCGCGATGTTATTACCAAGGGCCCAATTGTCAAT AATGTGAAGTCCGAAGCATCCCGCACCAGCGATGAGTTCCGCGATCTGAAAAACTCGCGTGTGACCCCTTCGAAC ACCACCGCCGATGGTCAACCATTGACTCACTACCACTCTTTGATGTACAGCCTTTTGAGCTGGGAACAACCCCGT GCGACCGCCGTTTCCTACGCCAGCATGATCTGTTTCATCTTCGCCGCTCGTTACATGCCTCTCCTCCGCTGGGCC TTCAAGTTCCTGTACATGTCGTTGGGAGTGACCGCCACTGTCGAGATTGCTGGCCATCTTATCCTCAAGCGGGGA ATCGCCAGTGGATTCCGCCCCCGCCGTTACTACACTGTCCCCAAGGAAGTTATTGAGGGTGTCCTCGAGGACCTC GAGCAGCTCGTGGACTTTTTCTTGATCGAGTTCCAGCGCATCCTGTTCGCTGAGAATGTCCTCCACACCGTTTTT GCTTTCAATGCTGCTTTCATCGGCTACTGGCTGCTCCGTTTCCTTCCCTTCTGGGGCGTGGCCTTGATTGCTGTG ACCACCACATACTTCACCCCCCTGATCTACATCAGCAACCGTGAATTCATCGACGAGCAGATTACCAACTACCAG GAGATCATCAACTCCCAGACCAACCAGCTTCGAGACATGGCTGGCGAGCGTACCTCTCACGCCACCGACTTGGTG AAGCAGTATGTCGGTGAGTACAGCTCTAAGGCTCAAGGTTACATCGCCCACCGACGCTCTGCCTCCCGGGAGACC AAGCTTGCGAGCCCAATCAAGCGTGAGACCGTTGAGCCCGCTGCCAACTTCACTGCCCCTGTCGCCAAGCCTGCC GTCGAGCCCGTTATCAAGCACGAGGACTTCCCGGAGGCCCCCAAGGCCGCTCCTGTCGCTCAGGCTCTCGAGTCT GGCATTGTTGCGTCTGTTGAGCCGGCAGAGCAGGCGAAGGGTCGTGAGCCTCTTCTGGCTATCTGA |
| Transcript | >Pro_DTO377G3_2|g5214.t1 ATGGCTTCTGGTGACGTGACCTACCCTAACACGGGCAGCATCCGCGATGTTATTACCAAGGGCCCAATTGTCAAT AATGTGAAGTCCGAAGCATCCCGCACCAGCGATGAGTTCCGCGATCTGAAAAACTCGCGTGTGACCCCTTCGAAC ACCACCGCCGATGGTCAACCATTGACTCACTACCACTCTTTGATGTACAGCCTTTTGAGCTGGGAACAACCCCGT GCGACCGCCGTTTCCTACGCCAGCATGATCTGTTTCATCTTCGCCGCTCGTTACATGCCTCTCCTCCGCTGGGCC TTCAAGTTCCTGTACATGTCGTTGGGAGTGACCGCCACTGTCGAGATTGCTGGCCATCTTATCCTCAAGCGGGGA ATCGCCAGTGGATTCCGCCCCCGCCGTTACTACACTGTCCCCAAGGAAGTTATTGAGGGTGTCCTCGAGGACCTC GAGCAGCTCGTGGACTTTTTCTTGATCGAGTTCCAGCGCATCCTGTTCGCTGAGAATGTCCTCCACACCGTTTTT GCTTTCAATGCTGCTTTCATCGGCTACTGGCTGCTCCGTTTCCTTCCCTTCTGGGGCGTGGCCTTGATTGCTGTG ACCACCACATACTTCACCCCCCTGATCTACATCAGCAACCGTGAATTCATCGACGAGCAGATTACCAACTACCAG GAGATCATCAACTCCCAGACCAACCAGCTTCGAGACATGGCTGGCGAGCGTACCTCTCACGCCACCGACTTGGTG AAGCAGTATGTCGGTGAGTACAGCTCTAAGGCTCAAGGTTACATCGCCCACCGACGCTCTGCCTCCCGGGAGACC AAGCTTGCGAGCCCAATCAAGCGTGAGACCGTTGAGCCCGCTGCCAACTTCACTGCCCCTGTCGCCAAGCCTGCC GTCGAGCCCGTTATCAAGCACGAGGACTTCCCGGAGGCCCCCAAGGCCGCTCCTGTCGCTCAGGCTCTCGAGTCT GGCATTGTTGCGTCTGTTGAGCCGGCAGAGCAGGCGAAGGGTCGTGAGCCTCTTCTGGCTATCTGA |
| Gene | >Pro_DTO377G3_2|g5214.t1 ATGGCTTCTGGTGACGTGACCTACCCTAACACGGGCAGTAAGGTAAGAGAACCAAGTCAATTCCATTCGACAACA TGAATATGCTAACCTCAGTCACCCCACAGTATTGCGCTCTTTTCTTTTCCCTAGATTTCGTGGGAGAGACTGACC TTGACCCTTTTGCGTTCAGGCATCCGCGATGTTATTACCAAGGGTAAGCAGGCGTCTGAAAGTCTCCGAAAGTCG ATCAAAGCAAGCTGACTAGTTCATCCACAGGCCCAATTGTCAATAATGTGAAGTCCGAAGCATCCCGCACCAGCG ATGAGTTCCGCGATCTGAAAAACTCGCGTGTGACCCCTTCGAACACCACCGCCGATGGTCAACCATTGACTCGTA GGTCATAAGAACTGGATTAATTGGGTGATGGGATATTGACAAGTGTCTAGACTACCACTCTTTGATGTACAGCCT TTTGAGCGTGAGTTGTCGCCCGAGTCTTCAAGTTGGATAGCTTGCTAATCTTTCTCTGGATATAGTGGGAACAAC CCCGTGCGACCGCCGTTTCCTACGCCAGCATGATCTGTTTCATCTTCGCCGCTCGTTACATGCCTCTCCTCCGCT GGGCCTTCAAGTTCCTGTACATGTCGTTGGGAGGTGAGTTGGTCGCGTGACCTACGGTCAACAGAGTGGTTGGTT AACAATTGTGTTTAGTGACCGCCACTGTCGAGATTGCTGGCCATCTTATCCTCAAGCGGGGAATCGCCAGTGGAT TCCGCCCCCGCCGTTACTACACTGTCCCCAAGGAAGTTATTGAGGGTGTCCTCGAGGACCTCGAGCAGCTCGTGG ACTTTTTCTTGATCGAGTTCCAGCGCATCCTGTTCGCTGAGAATGTCCTCCACACCGTTTTTGTAGGTTGCAACT TTGTGAACTTATCAACGAAGATAAAAAGGCAGAGACTAACGGCTTAGGCTTTCAATGCTGCTTTCATCGGCTACT GGCTGCTCCGTTTCCTTCCCTTCTGGGGCGTGGCCTTGATTGCTGTGACCACCACATACTTCACCCCCCTGATCT ACATCAGCAACCGTGAATTCATCGACGAGCAGATTACCAACTACCAGGAGATCATCAACTCCCAGACCAACCAGC TTCGAGACATGGCTGGCGAGCGTACCTCTCACGCCACCGACTTGGTGAAGCAGTATGTCGGTGAGTACAGCTCTA AGGCTCAAGGTTACATCGCCCACCGACGCTCTGCCTCCCGGGAGACCAAGCTTGCGAGCCCAATCAAGCGTGAGA CCGTTGAGCCCGCTGCCAACTTCACTGCCCCTGTCGCCAAGCCTGCCGTCGAGCCCGTTATCAAGCACGAGGACT TCCCGGAGGCCCCCAAGGCCGCTCCTGTCGCTCAGGCTCTCGAGTCTGGCATTGTTGCGTCTGTTGAGCCGGCAG AGCAGGCGAAGGGTCGTGAGCCTCTTCTGGCTATCTGA |