© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5200.t1 |
| Gene name | |
| Location | scaffold_12:157213..158989 |
| Strand | - |
| Gene length (bp) | 1776 |
| Transcript length (bp) | 1674 |
| Coding sequence length (bp) | 1674 |
| Protein length (aa) | 558 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00135 | COesterase | Carboxylesterase family | 6.1E-75 | 35 | 548 |
| PF20434 | BD-FAE | BD-FAE | 1.6E-11 | 152 | 254 |
| PF07859 | Abhydrolase_3 | alpha/beta hydrolase fold | 5.2E-06 | 159 | 292 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 15 | 0.999676 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 95.24 | 57.93 | 132.56 |
| 5d_25C | Five days - 25 degrees Celsius | 29.16 | 16.44 | 41.89 |
| 7d_25C | Seven days - 25 degrees Celsius | 12.99 | 6.10 | 19.88 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.78 | 4.85 | 16.70 |
| 7d_15C | Seven days - 15 degrees Celsius | 59.65 | 35.64 | 83.66 |
| 7d_30C | Seven days - 30 degrees Celsius | 24.32 | 13.32 | 35.33 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.027948 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.001804 | yes |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.539472 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.017762 | yes |
| 7d_25C | 10d_25C | 0.630516 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.002761 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5381 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5200.t1 MVAVLLLTLASACLASKLPVVDLGYELHQAISFNNSHGLYNFSNIRYAAPPVGELRFQAPVLPKQNRDHIQNGSV GKICPQAAPLWSTTAEEAFLLSYFYNTSFPLSTNISSYEYKPAKQDPRTTEDCLFLDVIVPKKIFERSKGEAAAF RKNLAPVLVWIYGGGYVGGEKSSSDPTGLIQRSQQGNNDGVVYVALNYRLGAFGWLGGDSITANGTANAALHDQR FALDWVYKNIHLFGGDATRVTVMGESAGAGSILHQITAYGGTRGAAPFQQAIMQSPGWVPVIGEEEQEATLQQFL GILNVSTIEQARKLPSAKLIAANAYQVATKSQWGQFTYGPVVDGSFVPALPGQLLLRGDFDPNLNIMVGHNADEG LAFTSPDSVKSTGLATQMKTLSPNTPKNVSDFVYNVLYPPVYNGSYGYTDSVARTALVISDLIFQCNTDYINRAF YNQTYAYEFSIPPALHGQDVSYTFYDNKTSSSLLGVTNATVALAMQDYFTSFVQHGVPKSHLAPVFRKHGQYAQL MNIGNNSIQATRDLTNNPRCRFWQTAPYYQAT* |
| Coding | >Pro_DTO377G3_2|g5200.t1 ATGGTCGCTGTGTTGTTGTTGACGCTGGCTTCGGCTTGTCTGGCCTCCAAGCTCCCTGTAGTTGATCTGGGATAT GAGCTGCACCAAGCAATCTCATTCAATAACTCCCATGGCCTCTACAACTTCAGCAACATCCGTTATGCCGCACCC CCGGTTGGCGAGTTGCGATTCCAGGCGCCTGTACTTCCCAAACAAAACAGAGATCACATTCAGAATGGCTCTGTG GGAAAGATCTGTCCCCAGGCAGCCCCGTTGTGGTCGACAACTGCCGAAGAAGCCTTCCTCTTGAGCTACTTCTAT AATACATCCTTCCCTCTATCCACCAACATCTCTTCCTACGAGTACAAACCGGCGAAGCAAGACCCACGCACTACT GAGGACTGTTTATTCCTCGATGTGATTGTGCCTAAGAAGATCTTCGAACGCAGCAAAGGTGAAGCCGCAGCATTC CGAAAGAACTTGGCGCCGGTGCTGGTGTGGATCTATGGTGGAGGCTATGTGGGGGGAGAAAAGAGCAGCTCCGAC CCCACCGGATTGATCCAGCGAAGTCAGCAGGGAAACAATGATGGGGTTGTTTATGTTGCCTTGAATTATCGATTG GGTGCATTTGGCTGGCTTGGTGGCGACAGTATCACAGCCAATGGCACGGCCAATGCAGCGCTGCACGATCAACGA TTTGCTCTTGACTGGGTGTATAAGAACATTCACCTGTTCGGTGGAGATGCAACCCGAGTCACAGTTATGGGAGAG TCTGCCGGCGCAGGATCAATCCTTCATCAGATCACCGCGTATGGAGGCACCCGCGGCGCTGCACCCTTCCAACAA GCGATCATGCAGAGCCCAGGCTGGGTCCCAGTCATTGGCGAAGAGGAGCAAGAAGCCACGCTGCAACAGTTCCTA GGAATTCTCAATGTCAGCACGATTGAGCAAGCCCGGAAATTGCCTTCGGCCAAATTGATCGCGGCCAATGCGTAC CAGGTCGCGACCAAGTCCCAGTGGGGACAGTTCACCTACGGTCCCGTTGTGGACGGCAGCTTCGTTCCAGCTCTG CCGGGGCAGCTTTTGCTTCGAGGCGATTTCGACCCCAACTTGAATATCATGGTCGGCCATAACGCAGACGAGGGG TTGGCCTTTACTTCGCCGGACAGCGTCAAGAGCACCGGTCTGGCCACTCAAATGAAGACCTTGTCACCGAACACT CCCAAAAACGTGTCCGACTTTGTCTATAATGTCCTCTACCCACCGGTCTATAACGGGTCTTATGGGTACACCGAC TCGGTCGCGCGCACGGCGCTCGTCATCTCCGACCTCATCTTCCAGTGCAATACCGATTATATCAACCGCGCGTTC TACAATCAGACCTATGCGTATGAGTTCAGCATCCCGCCCGCGCTGCACGGACAGGATGTCTCATACACGTTCTAC GACAATAAGACCAGCTCTTCGCTCCTGGGAGTCACCAACGCGACCGTGGCGTTGGCTATGCAGGATTATTTCACC AGCTTTGTCCAGCATGGCGTGCCCAAGTCTCATCTGGCACCGGTGTTCCGAAAGCATGGCCAGTATGCACAGCTC ATGAACATTGGCAATAATAGCATCCAGGCGACGCGGGACCTGACCAACAACCCACGCTGCCGGTTCTGGCAGACT GCGCCTTATTACCAGGCGACCTGA |
| Transcript | >Pro_DTO377G3_2|g5200.t1 ATGGTCGCTGTGTTGTTGTTGACGCTGGCTTCGGCTTGTCTGGCCTCCAAGCTCCCTGTAGTTGATCTGGGATAT GAGCTGCACCAAGCAATCTCATTCAATAACTCCCATGGCCTCTACAACTTCAGCAACATCCGTTATGCCGCACCC CCGGTTGGCGAGTTGCGATTCCAGGCGCCTGTACTTCCCAAACAAAACAGAGATCACATTCAGAATGGCTCTGTG GGAAAGATCTGTCCCCAGGCAGCCCCGTTGTGGTCGACAACTGCCGAAGAAGCCTTCCTCTTGAGCTACTTCTAT AATACATCCTTCCCTCTATCCACCAACATCTCTTCCTACGAGTACAAACCGGCGAAGCAAGACCCACGCACTACT GAGGACTGTTTATTCCTCGATGTGATTGTGCCTAAGAAGATCTTCGAACGCAGCAAAGGTGAAGCCGCAGCATTC CGAAAGAACTTGGCGCCGGTGCTGGTGTGGATCTATGGTGGAGGCTATGTGGGGGGAGAAAAGAGCAGCTCCGAC CCCACCGGATTGATCCAGCGAAGTCAGCAGGGAAACAATGATGGGGTTGTTTATGTTGCCTTGAATTATCGATTG GGTGCATTTGGCTGGCTTGGTGGCGACAGTATCACAGCCAATGGCACGGCCAATGCAGCGCTGCACGATCAACGA TTTGCTCTTGACTGGGTGTATAAGAACATTCACCTGTTCGGTGGAGATGCAACCCGAGTCACAGTTATGGGAGAG TCTGCCGGCGCAGGATCAATCCTTCATCAGATCACCGCGTATGGAGGCACCCGCGGCGCTGCACCCTTCCAACAA GCGATCATGCAGAGCCCAGGCTGGGTCCCAGTCATTGGCGAAGAGGAGCAAGAAGCCACGCTGCAACAGTTCCTA GGAATTCTCAATGTCAGCACGATTGAGCAAGCCCGGAAATTGCCTTCGGCCAAATTGATCGCGGCCAATGCGTAC CAGGTCGCGACCAAGTCCCAGTGGGGACAGTTCACCTACGGTCCCGTTGTGGACGGCAGCTTCGTTCCAGCTCTG CCGGGGCAGCTTTTGCTTCGAGGCGATTTCGACCCCAACTTGAATATCATGGTCGGCCATAACGCAGACGAGGGG TTGGCCTTTACTTCGCCGGACAGCGTCAAGAGCACCGGTCTGGCCACTCAAATGAAGACCTTGTCACCGAACACT CCCAAAAACGTGTCCGACTTTGTCTATAATGTCCTCTACCCACCGGTCTATAACGGGTCTTATGGGTACACCGAC TCGGTCGCGCGCACGGCGCTCGTCATCTCCGACCTCATCTTCCAGTGCAATACCGATTATATCAACCGCGCGTTC TACAATCAGACCTATGCGTATGAGTTCAGCATCCCGCCCGCGCTGCACGGACAGGATGTCTCATACACGTTCTAC GACAATAAGACCAGCTCTTCGCTCCTGGGAGTCACCAACGCGACCGTGGCGTTGGCTATGCAGGATTATTTCACC AGCTTTGTCCAGCATGGCGTGCCCAAGTCTCATCTGGCACCGGTGTTCCGAAAGCATGGCCAGTATGCACAGCTC ATGAACATTGGCAATAATAGCATCCAGGCGACGCGGGACCTGACCAACAACCCACGCTGCCGGTTCTGGCAGACT GCGCCTTATTACCAGGCGACCTGA |
| Gene | >Pro_DTO377G3_2|g5200.t1 ATGGTCGCTGTGTTGTTGTTGACGCTGGCTTCGGCTTGTCTGGCCTCCAAGCTCCCTGTAGTTGATCTGGGATAT GAGCTGCACCAAGCAATCTCATTCAATGTTAGTTGACTCTTCTTTAGCTTGATCTTGATTACCCCTGACATAAGT AGAACTCCCATGGCCTCTACAACTTCAGCAACATCCGTTATGCCGCACCCCCGGTTGGCGAGTTGCGATTCCAGG CGCCTGTACTTCCCAAACAAAACAGAGATCACATTCAGAATGGCTCTGTGGGAAAGATCTGTCCCCAGGCAGCCC CGTTGTGGTCGACAACTGCCGAAGAAGCCTTCCTCTTGAGCTACTTCTATAATACATCCTTCCCTCTATCCACCA ACATCTCTTCCTACGAGTACAAACCGGCGAAGCAAGACCCACGCACTACTGAGGACTGTTTATTCCTCGATGTGA TTGTGCCTAAGAAGATCTTCGAACGCAGCAAAGGTGAAGCCGCAGCATTCCGAAAGAACTTGGCGCCGGTGCTGG TGTGGATCTATGGTGGAGGCTATGTGGGGGGAGAAAAGAGCAGCTCCGACCCCACCGGATTGATCCAGCGAAGTC AGCAGGGAAACAATGATGGGGTTGTTTATGTTGCCTTGAATTATCGAGTAAGTCAACGACCCATTTTCCGTCGCT GTCGTGAAAATACTAATTTCTTAGTTGGGTGCATTTGGCTGGCTTGGTGGCGACAGTATCACAGCCAATGGCACG GCCAATGCAGCGCTGCACGATCAACGATTTGCTCTTGACTGGGTGTATAAGAACATTCACCTGTTCGGTGGAGAT GCAACCCGAGTCACAGTTATGGGAGAGTCTGCCGGCGCAGGATCAATCCTTCATCAGATCACCGCGTATGGAGGC ACCCGCGGCGCTGCACCCTTCCAACAAGCGATCATGCAGAGCCCAGGCTGGGTCCCAGTCATTGGCGAAGAGGAG CAAGAAGCCACGCTGCAACAGTTCCTAGGAATTCTCAATGTCAGCACGATTGAGCAAGCCCGGAAATTGCCTTCG GCCAAATTGATCGCGGCCAATGCGTACCAGGTCGCGACCAAGTCCCAGTGGGGACAGTTCACCTACGGTCCCGTT GTGGACGGCAGCTTCGTTCCAGCTCTGCCGGGGCAGCTTTTGCTTCGAGGCGATTTCGACCCCAACTTGAATATC ATGGTCGGCCATAACGCAGACGAGGGGTTGGCCTTTACTTCGCCGGACAGCGTCAAGAGCACCGGTCTGGCCACT CAAATGAAGACCTTGTCACCGAACACTCCCAAAAACGTGTCCGACTTTGTCTATAATGTCCTCTACCCACCGGTC TATAACGGGTCTTATGGGTACACCGACTCGGTCGCGCGCACGGCGCTCGTCATCTCCGACCTCATCTTCCAGTGC AATACCGATTATATCAACCGCGCGTTCTACAATCAGACCTATGCGTATGAGTTCAGCATCCCGCCCGCGCTGCAC GGACAGGATGTCTCATACACGTTCTACGACAATAAGACCAGCTCTTCGCTCCTGGGAGTCACCAACGCGACCGTG GCGTTGGCTATGCAGGATTATTTCACCAGCTTTGTCCAGCATGGCGTGCCCAAGTCTCATCTGGCACCGGTGTTC CGAAAGCATGGCCAGTATGCACAGCTCATGAACATTGGCAATAATAGCATCCAGGCGACGCGGGACCTGACCAAC AACCCACGCTGCCGGTTCTGGCAGACTGCGCCTTATTACCAGGCGACCTGA |