© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5198.t1 |
| Gene name | |
| Location | scaffold_12:152954..154547 |
| Strand | + |
| Gene length (bp) | 1593 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 9.8E-52 | 14 | 351 |
| PF11954 | DUF3471 | Domain of unknown function (DUF3471) | 2.1E-16 | 406 | 511 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 20.15 | 10.39 | 29.90 |
| 5d_25C | Five days - 25 degrees Celsius | 14.91 | 7.08 | 22.75 |
| 7d_25C | Seven days - 25 degrees Celsius | 13.65 | 6.31 | 20.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 8.48 | 3.36 | 13.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 24.70 | 13.29 | 36.11 |
| 7d_30C | Seven days - 30 degrees Celsius | 11.97 | 5.35 | 18.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.325045 | no |
| 3d_25C | 7d_25C | 0.188779 | no |
| 3d_25C | 7d_15C | 0.523681 | no |
| 3d_25C | 7d_30C | 0.071858 | no |
| 3d_25C | 10d_25C | 0.004045 | yes |
| 5d_25C | 7d_25C | 0.834354 | no |
| 5d_25C | 7d_15C | 0.055327 | no |
| 5d_25C | 7d_30C | 0.539179 | no |
| 5d_25C | 10d_25C | 0.067780 | no |
| 7d_25C | 7d_15C | 0.027278 | yes |
| 7d_25C | 7d_30C | 0.748137 | no |
| 7d_25C | 10d_25C | 0.142247 | no |
| 7d_15C | 7d_30C | 0.007437 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.341984 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5198.t1 MVLRSSNSPLTSEFDALVQQQMDKWKVPGLSMAVVHGSSTWSKAYGFAEFPDRKMTTDSLFSTCSTTKAFTAAAM SLAIDDRKDTKFPLRWDTPISSILRDDFVLENDYNTMHTTIEDALSHRSGLSTHDACLNLVHPQRSLREAVRNLR HLPIAYAPRTTFSYNNNMYMVVSHALEQIEGRTLGETLKKRIWDPLGMNDTYFSVTDVSKDPSLRPRLVRGYTWD PDTNTYIAEPYMNDVAVTGAGAMVSSVLEYTKWLRAMIYQEGPISSQGHAELLKPRTVITNWDEIVAPPAVPCHL YALGWFVGSYRGEPFYWHSGSWPGFGIMVGFLPSKGFGFAMMGNTTNARNAQVEIYMHLLDQISGGSRIPHPVAV GQATELGNRTLKAKSECVDEAIKRLYPSLPDPVIPHSLRLNQYTGTYEHPACSSITLSVRNGCLVADLLDRAIPS LITLVHASGEFFVAHHYQPRTIGSLSGYYATEFIVGSNGIATAMGLDVEPALNGEKMWFDREY* |
| Coding | >Pro_DTO377G3_2|g5198.t1 ATGGTTCTCAGAAGTTCAAATTCGCCATTGACCTCCGAGTTCGATGCCTTGGTACAGCAGCAGATGGACAAATGG AAAGTCCCCGGACTCTCCATGGCTGTCGTTCATGGCTCCAGCACCTGGTCAAAAGCGTATGGATTCGCCGAGTTT CCTGATCGCAAGATGACCACCGATTCTCTCTTCTCTACTTGTAGCACCACTAAGGCATTCACCGCAGCGGCCATG TCTCTCGCCATCGACGATAGAAAGGATACCAAATTCCCCCTTCGCTGGGATACCCCAATTTCGTCCATACTGAGA GATGATTTTGTGCTGGAGAACGACTACAACACAATGCATACTACCATAGAAGATGCCTTATCGCACCGCTCAGGG CTTTCGACTCACGACGCCTGTTTAAATTTAGTGCATCCCCAGAGATCCCTGCGCGAAGCTGTTCGCAACTTGCGA CATCTTCCTATAGCCTATGCGCCCCGCACTACCTTTTCCTACAACAATAACATGTATATGGTGGTATCCCATGCA TTGGAACAAATTGAAGGCCGAACTCTCGGCGAGACTCTCAAGAAACGTATTTGGGATCCATTAGGAATGAACGAC ACATACTTCTCCGTCACAGATGTCTCGAAGGACCCATCTCTTCGTCCTCGACTCGTACGAGGCTACACCTGGGAC CCAGACACCAACACCTACATCGCAGAACCATACATGAACGACGTCGCTGTGACTGGAGCCGGCGCCATGGTGAGC AGCGTACTCGAATACACCAAGTGGCTGCGCGCGATGATTTACCAAGAGGGTCCCATCTCCTCACAGGGCCACGCA GAACTCCTGAAGCCACGTACGGTGATCACAAATTGGGATGAGATCGTCGCACCTCCTGCGGTCCCATGCCATCTC TATGCCTTGGGATGGTTTGTGGGTAGTTACCGCGGTGAGCCGTTCTACTGGCACAGCGGGAGCTGGCCCGGATTC GGCATCATGGTGGGCTTCCTACCGAGCAAGGGCTTTGGCTTTGCTATGATGGGTAATACGACGAATGCCCGAAAT GCGCAGGTGGAGATCTACATGCACCTTCTAGATCAGATTTCCGGAGGATCGCGGATCCCACACCCAGTGGCAGTG GGCCAGGCGACAGAACTGGGAAATAGGACGCTCAAAGCCAAGTCCGAGTGTGTGGACGAAGCCATCAAACGGCTT TACCCGTCTCTGCCTGATCCTGTCATTCCCCATTCTTTACGGTTGAACCAATATACGGGGACATACGAGCATCCT GCGTGCAGTTCTATCACTCTATCCGTGCGAAATGGGTGTTTGGTTGCAGATCTACTTGACCGTGCTATTCCTTCC CTTATCACTCTCGTCCATGCAAGCGGGGAGTTCTTTGTGGCGCATCACTACCAGCCTAGGACAATTGGATCTCTC TCCGGTTACTACGCTACGGAATTCATAGTGGGTTCTAATGGAATTGCTACGGCGATGGGCCTGGATGTGGAGCCA GCCTTGAATGGAGAGAAGATGTGGTTTGATCGCGAGTACTGA |
| Transcript | >Pro_DTO377G3_2|g5198.t1 ATGGTTCTCAGAAGTTCAAATTCGCCATTGACCTCCGAGTTCGATGCCTTGGTACAGCAGCAGATGGACAAATGG AAAGTCCCCGGACTCTCCATGGCTGTCGTTCATGGCTCCAGCACCTGGTCAAAAGCGTATGGATTCGCCGAGTTT CCTGATCGCAAGATGACCACCGATTCTCTCTTCTCTACTTGTAGCACCACTAAGGCATTCACCGCAGCGGCCATG TCTCTCGCCATCGACGATAGAAAGGATACCAAATTCCCCCTTCGCTGGGATACCCCAATTTCGTCCATACTGAGA GATGATTTTGTGCTGGAGAACGACTACAACACAATGCATACTACCATAGAAGATGCCTTATCGCACCGCTCAGGG CTTTCGACTCACGACGCCTGTTTAAATTTAGTGCATCCCCAGAGATCCCTGCGCGAAGCTGTTCGCAACTTGCGA CATCTTCCTATAGCCTATGCGCCCCGCACTACCTTTTCCTACAACAATAACATGTATATGGTGGTATCCCATGCA TTGGAACAAATTGAAGGCCGAACTCTCGGCGAGACTCTCAAGAAACGTATTTGGGATCCATTAGGAATGAACGAC ACATACTTCTCCGTCACAGATGTCTCGAAGGACCCATCTCTTCGTCCTCGACTCGTACGAGGCTACACCTGGGAC CCAGACACCAACACCTACATCGCAGAACCATACATGAACGACGTCGCTGTGACTGGAGCCGGCGCCATGGTGAGC AGCGTACTCGAATACACCAAGTGGCTGCGCGCGATGATTTACCAAGAGGGTCCCATCTCCTCACAGGGCCACGCA GAACTCCTGAAGCCACGTACGGTGATCACAAATTGGGATGAGATCGTCGCACCTCCTGCGGTCCCATGCCATCTC TATGCCTTGGGATGGTTTGTGGGTAGTTACCGCGGTGAGCCGTTCTACTGGCACAGCGGGAGCTGGCCCGGATTC GGCATCATGGTGGGCTTCCTACCGAGCAAGGGCTTTGGCTTTGCTATGATGGGTAATACGACGAATGCCCGAAAT GCGCAGGTGGAGATCTACATGCACCTTCTAGATCAGATTTCCGGAGGATCGCGGATCCCACACCCAGTGGCAGTG GGCCAGGCGACAGAACTGGGAAATAGGACGCTCAAAGCCAAGTCCGAGTGTGTGGACGAAGCCATCAAACGGCTT TACCCGTCTCTGCCTGATCCTGTCATTCCCCATTCTTTACGGTTGAACCAATATACGGGGACATACGAGCATCCT GCGTGCAGTTCTATCACTCTATCCGTGCGAAATGGGTGTTTGGTTGCAGATCTACTTGACCGTGCTATTCCTTCC CTTATCACTCTCGTCCATGCAAGCGGGGAGTTCTTTGTGGCGCATCACTACCAGCCTAGGACAATTGGATCTCTC TCCGGTTACTACGCTACGGAATTCATAGTGGGTTCTAATGGAATTGCTACGGCGATGGGCCTGGATGTGGAGCCA GCCTTGAATGGAGAGAAGATGTGGTTTGATCGCGAGTACTGA |
| Gene | >Pro_DTO377G3_2|g5198.t1 ATGGTTCTCAGAAGTTCAAATTCGCCATTGACCTCCGAGTTCGATGCCTTGGTACAGCAGCAGATGGACAAATGG AAAGTCCCCGGACTCTCCATGGCTGTCGTTCATGGCTCCAGCACCTGGTCAAAAGTATGAAGACATAGTGCACTT TATTATTGCAGACCACTAAACCACTTTTAGGCGTATGGATTCGCCGAGTTTCCTGATCGCAAGATGACCACCGAT TCTCTCTTCTCTACTTGTAGCACCACTAAGGCATTCACCGCAGCGGCCATGTCTCTCGCCATCGACGATAGAAAG GATACCAAATTCCCCCTTCGCTGGGATACCCCAATTTCGTCCATACTGAGAGATGATTTTGTGCTGGAGAACGAC TACAACACAATGCATACTACCATAGAAGATGCCTTATCGCACCGCTCAGGGCTTTCGACTCACGACGCCTGTTTA AATTTAGTGCATCCCCAGAGATCCCTGCGCGAAGCTGTTCGCAACTTGCGACATCTTCCTATAGCCTATGCGCCC CGCACTACCTTTTCCTACAACAATAACATGTATATGGTGGTATCCCATGCATTGGAACAAATTGAAGGCCGAACT CTCGGCGAGACTCTCAAGAAACGTATTTGGGATCCATTAGGAATGAACGACACATACTTCTCCGTCACAGATGTC TCGAAGGACCCATCTCTTCGTCCTCGACTCGTACGAGGCTACACCTGGGACCCAGACACCAACACCTACATCGCA GAACCATACATGAACGACGTCGCTGTGACTGGAGCCGGCGCCATGGTGAGCAGCGTACTCGAATACACCAAGTGG CTGCGCGCGATGATTTACCAAGAGGGTCCCATCTCCTCACAGGGCCACGCAGAACTCCTGAAGCCACGTACGGTG ATCACAAATTGGGATGAGATCGTCGCACCTCCTGCGGTCCCATGCCATCTCTATGCCTTGGGATGGTTTGTGGGT AGTTACCGCGGTGAGCCGTTCTACTGGCACAGCGGGAGCTGGCCCGGATTCGGCATCATGGTGGGCTTCCTACCG AGCAAGGGCTTTGGCTTTGCTATGATGGGTAATACGACGAATGCCCGAAATGCGCAGGTGGAGATCTACATGCAC CTTCTAGATCAGATTTCCGGAGGATCGCGGATCCCACACCCAGTGGCAGTGGGCCAGGCGACAGAACTGGGAAAT AGGACGCTCAAAGCCAAGTCCGAGTGTGTGGACGAAGCCATCAAACGGCTTTACCCGTCTCTGCCTGATCCTGTC ATTCCCCATTCTTTACGGTTGAACCAATATACGGGGACATACGAGCATCCTGCGTGCAGTTCTATCACTCTATCC GTGCGAAATGGGTGTTTGGTTGCAGATCTACTTGACCGTGCTATTCCTTCCCTTATCACTCTCGTCCATGCAAGC GGGGAGTTCTTTGTGGCGCATCACTACCAGCCTAGGACAATTGGATCTCTCTCCGGTTACTACGCTACGGAATTC ATAGTGGGTTCTAATGGAATTGCTACGGCGATGGGCCTGGATGTGGAGCCAGCCTTGAATGGAGAGAAGATGTGG TTTGATCGCGAGTACTGA |