© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5196.t1 |
| Gene name | |
| Location | scaffold_12:147510..148703 |
| Strand | - |
| Gene length (bp) | 1193 |
| Transcript length (bp) | 981 |
| Coding sequence length (bp) | 981 |
| Protein length (aa) | 327 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00153 | Mito_carr | Mitochondrial carrier protein | 2.6E-19 | 31 | 117 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 1.0E-18 | 131 | 225 |
| PF00153 | Mito_carr | Mitochondrial carrier protein | 4.0E-16 | 237 | 322 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 86 | 108 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 101.52 | 61.05 | 141.98 |
| 5d_25C | Five days - 25 degrees Celsius | 66.90 | 39.02 | 94.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 63.95 | 37.08 | 90.83 |
| 10d_25C | Ten days - 25 degrees Celsius | 71.34 | 42.01 | 100.66 |
| 7d_15C | Seven days - 15 degrees Celsius | 86.83 | 51.83 | 121.83 |
| 7d_30C | Seven days - 30 degrees Celsius | 49.43 | 27.44 | 71.42 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.059864 | no |
| 3d_25C | 7d_25C | 0.034125 | yes |
| 3d_25C | 7d_15C | 0.561458 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.118550 | no |
| 5d_25C | 7d_25C | 0.896524 | no |
| 5d_25C | 7d_15C | 0.289194 | no |
| 5d_25C | 7d_30C | 0.231396 | no |
| 5d_25C | 10d_25C | 0.844075 | no |
| 7d_25C | 7d_15C | 0.187022 | no |
| 7d_25C | 7d_30C | 0.318959 | no |
| 7d_25C | 10d_25C | 0.720723 | no |
| 7d_15C | 7d_30C | 0.008133 | yes |
| 7d_15C | 10d_25C | 0.448082 | no |
| 7d_30C | 10d_25C | 0.119453 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5196.t1 MSSSTSPTAQQLENEINDIETKAVNQTIVQLRSLAAGAVGGLCAVVVGHPFDLVKVRLQTAEKGVYSGAMDVVRK TVAREGLARGLYAGVSAPLVGVTPMFAVSFWGYDVGKTLVSKFSTVPVKNDTPQYSIAQISSAGFFSAIPMTLIT APFERVKVLLQIQGQKQLAPGEKPQYSGGLDVVRQLYKEGGVRSVFRGSAMTLARDGPGSAAYFAAYEYIKRSLT PKDAEGNVTGELSLSAVVCAGGAAGIAMWIPVFPVDTIKSRLQSAPGKPTMGGVIRSVYASGGLKAFFPGFGPAL ARAVPANAATFLGVELAHKGMKKLFD* |
| Coding | >Pro_DTO377G3_2|g5196.t1 ATGTCTTCCTCTACCTCCCCCACCGCGCAGCAGCTTGAGAATGAGATCAACGACATCGAGACCAAGGCCGTCAAC CAGACAATTGTACAGCTGCGCTCTCTCGCAGCCGGTGCCGTTGGTGGTCTCTGCGCTGTCGTCGTTGGACACCCG TTTGATCTAGTCAAGGTGCGCCTGCAGACGGCCGAAAAGGGAGTTTACTCAGGTGCCATGGATGTGGTCCGGAAG ACGGTAGCCCGTGAAGGATTGGCTCGAGGATTGTATGCCGGTGTCTCTGCGCCGCTTGTTGGAGTTACTCCCATG TTTGCCGTCAGCTTTTGGGGTTACGACGTGGGCAAGACTCTCGTGAGCAAGTTCTCTACCGTCCCAGTCAAGAAC GACACCCCGCAGTACTCCATCGCACAAATCTCTTCTGCAGGCTTCTTCTCCGCCATCCCCATGACCCTGATCACG GCACCCTTCGAGCGTGTCAAGGTCCTCCTCCAGATCCAGGGCCAGAAGCAACTGGCTCCGGGCGAGAAACCTCAG TACTCCGGTGGTCTGGATGTCGTGCGCCAGCTGTACAAGGAAGGTGGTGTTCGCAGCGTGTTCCGTGGTAGCGCC ATGACGTTGGCCCGTGATGGTCCCGGCTCGGCCGCCTACTTCGCGGCCTACGAGTACATCAAGCGCTCCTTGACC CCCAAGGATGCCGAAGGCAACGTGACGGGCGAGCTCTCCCTATCTGCCGTTGTGTGCGCTGGTGGTGCTGCCGGT ATCGCTATGTGGATCCCTGTCTTCCCCGTTGACACCATCAAGTCCCGCCTGCAGAGCGCACCGGGCAAGCCTACC ATGGGTGGTGTTATCCGCTCGGTTTACGCTAGCGGCGGTTTGAAGGCCTTCTTCCCTGGATTCGGACCTGCTCTC GCCCGTGCGGTGCCTGCCAATGCCGCCACTTTCCTCGGCGTTGAGCTGGCACACAAGGGCATGAAGAAGTTATTT GACTAA |
| Transcript | >Pro_DTO377G3_2|g5196.t1 ATGTCTTCCTCTACCTCCCCCACCGCGCAGCAGCTTGAGAATGAGATCAACGACATCGAGACCAAGGCCGTCAAC CAGACAATTGTACAGCTGCGCTCTCTCGCAGCCGGTGCCGTTGGTGGTCTCTGCGCTGTCGTCGTTGGACACCCG TTTGATCTAGTCAAGGTGCGCCTGCAGACGGCCGAAAAGGGAGTTTACTCAGGTGCCATGGATGTGGTCCGGAAG ACGGTAGCCCGTGAAGGATTGGCTCGAGGATTGTATGCCGGTGTCTCTGCGCCGCTTGTTGGAGTTACTCCCATG TTTGCCGTCAGCTTTTGGGGTTACGACGTGGGCAAGACTCTCGTGAGCAAGTTCTCTACCGTCCCAGTCAAGAAC GACACCCCGCAGTACTCCATCGCACAAATCTCTTCTGCAGGCTTCTTCTCCGCCATCCCCATGACCCTGATCACG GCACCCTTCGAGCGTGTCAAGGTCCTCCTCCAGATCCAGGGCCAGAAGCAACTGGCTCCGGGCGAGAAACCTCAG TACTCCGGTGGTCTGGATGTCGTGCGCCAGCTGTACAAGGAAGGTGGTGTTCGCAGCGTGTTCCGTGGTAGCGCC ATGACGTTGGCCCGTGATGGTCCCGGCTCGGCCGCCTACTTCGCGGCCTACGAGTACATCAAGCGCTCCTTGACC CCCAAGGATGCCGAAGGCAACGTGACGGGCGAGCTCTCCCTATCTGCCGTTGTGTGCGCTGGTGGTGCTGCCGGT ATCGCTATGTGGATCCCTGTCTTCCCCGTTGACACCATCAAGTCCCGCCTGCAGAGCGCACCGGGCAAGCCTACC ATGGGTGGTGTTATCCGCTCGGTTTACGCTAGCGGCGGTTTGAAGGCCTTCTTCCCTGGATTCGGACCTGCTCTC GCCCGTGCGGTGCCTGCCAATGCCGCCACTTTCCTCGGCGTTGAGCTGGCACACAAGGGCATGAAGAAGTTATTT GACTAA |
| Gene | >Pro_DTO377G3_2|g5196.t1 ATGTCTTCCTCTACCTCCCCCACCGCGCAGCAGCTTGAGAATGAGATCAACGACATCGAGACCAAGGCCGTCAAC CAGACAATTGTACAGCTGCGCTCTCTCGCAGCCGGTGCCGTTGGTGGTCTCTGCGCTGTCGTCGTTGGACACCCG TTTGATCTAGTCAAGGTGCGCCTGCAGACGGCCGAAAAGGGAGTTTACTCAGGTGCCATGGATGTGGTCCGGAAG ACGGTAGCCCGTGAAGGATTGGCTCGAGTATGATCACCACAAGCACATTGAATACTTTGCGACCGAACTGACAAT GGTTCCTAGGGATTGTATGCCGGTGTCTCTGCGCCGCTTGTTGGAGTTACTCCCATGTGTAAGTACTCTAGCATG CGCCATAATGGCTCTCACATCTGAAATTGATCGAGTTATGAGCTAATCAGTCCTGTCTCACAGTTGCCGTCAGCT TTTGGGTTCGTCTTTTTTTCTTTTTCTCTGCGCCCGCAGCTGCGAGCGCCCGTCCGGAAGCGATACTAACAACAA ATTAGGGTTACGACGTGGGCAAGACTCTCGTGAGCAAGTTCTCTACCGTCCCAGTCAAGAACGACACCCCGCAGT ACTCCATCGCACAAATCTCTTCTGCAGGCTTCTTCTCCGCCATCCCCATGACCCTGATCACGGCACCCTTCGAGC GTGTCAAGGTCCTCCTCCAGATCCAGGGCCAGAAGCAACTGGCTCCGGGCGAGAAACCTCAGTACTCCGGTGGTC TGGATGTCGTGCGCCAGCTGTACAAGGAAGGTGGTGTTCGCAGCGTGTTCCGTGGTAGCGCCATGACGTTGGCCC GTGATGGTCCCGGCTCGGCCGCCTACTTCGCGGCCTACGAGTACATCAAGCGCTCCTTGACCCCCAAGGATGCCG AAGGCAACGTGACGGGCGAGCTCTCCCTATCTGCCGTTGTGTGCGCTGGTGGTGCTGCCGGTATCGCTATGTGGA TCCCTGTCTTCCCCGTTGACACCATCAAGTCCCGCCTGCAGAGCGCACCGGGCAAGCCTACCATGGGTGGTGTTA TCCGCTCGGTTTACGCTAGCGGCGGTTTGAAGGCCTTCTTCCCTGGATTCGGACCTGCTCTCGCCCGTGCGGTGC CTGCCAATGCCGCCACTTTCCTCGGCGTTGAGCTGGCACACAAGGGCATGAAGAAGTTATTTGACTAA |