Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5189.t1
Gene name
Locationscaffold_12:133561..135073
Strand-
Gene length (bp)1512
Transcript length (bp)1386
Coding sequence length (bp)1386
Protein length (aa) 462

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13692 Glyco_trans_1_4 Glycosyl transferases group 1 1.7E-07 310 425

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 16 0.5

Transmembrane Domains

Domain # Start End Length
1 5 27 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 128.72 78.57 178.88
5d_25C Five days - 25 degrees Celsius 142.98 87.28 198.68
7d_25C Seven days - 25 degrees Celsius 119.78 72.84 166.73
10d_25C Ten days - 25 degrees Celsius 112.70 68.97 156.43
7d_15C Seven days - 15 degrees Celsius 264.30 150.67 377.93
7d_30C Seven days - 30 degrees Celsius 101.77 61.63 141.91

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.713110 no
3d_25C 7d_25C 0.811337 no
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.318750 no
3d_25C 10d_25C 0.614419 no
5d_25C 7d_25C 0.483562 no
5d_25C 7d_15C 0.002761 yes
5d_25C 7d_30C 0.120223 no
5d_25C 10d_25C 0.302361 no
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.529935 no
7d_25C 10d_25C 0.846308 no
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.714057 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5189.t1
MIETFISIVFGLSSALTVLILLLPSQYQPEQAGSPRSDDAKRRKTCVQILVLGDIGRSPRMQYHALSIAKHGGEV
VIIGYNESDPHPDIISNPNISIVPLRPHPALLQTSNKLLFTIYGPLKVLFQIACLWKCLAYTTKPSQWLLVQNPP
SIPTLAIASLVCFLRQTRLVIDWHNFGYSILALKLGPTHPLVKMSIWYEKVFCKSASAHFCVTNAMASVLKKDFN
LPAPVLPLHDRPASHFNPILDPNARMDFLTTLPETKEFHSYLKAGSLRVLVSSTSWTADEDFSVLIDALLRYSEL
AITVQPHLPEILAIITGKGPQKEMYLEQIAALEKSSKLQKVTIRTAWLSVPEYARLLASASLGVSLHTSSSGVDL
PMKVVDMFGAGLPVVGWDRFEAWPELVTEGVNGLGFGSSEELAEHLVDLFGENDKLESLRLGAQKESSRRWDDEW
DPIAGSLFGLT*
Coding >Pro_DTO377G3_2|g5189.t1
ATGATCGAGACCTTCATCAGCATAGTGTTCGGCCTGTCTAGCGCCCTCACTGTGTTGATTCTGTTACTTCCTTCG
CAATATCAACCAGAACAAGCAGGGTCTCCAAGATCCGATGACGCAAAAAGGCGCAAGACATGTGTTCAAATACTT
GTTCTTGGTGACATTGGCCGAAGCCCGCGCATGCAGTATCATGCATTGAGCATTGCGAAGCATGGCGGGGAGGTG
GTAATTATTGGGTATAATGAATCTGATCCTCATCCTGATATCATATCTAACCCCAACATTTCGATTGTTCCGCTT
CGCCCGCATCCCGCTCTCCTACAGACCAGTAACAAGCTGCTGTTTACAATTTACGGGCCCTTGAAGGTACTATTC
CAGATCGCCTGTCTCTGGAAGTGTCTCGCATACACCACAAAACCGTCCCAATGGCTTTTGGTTCAGAACCCGCCT
TCCATTCCTACACTGGCTATAGCCTCCCTTGTGTGTTTCCTGCGGCAAACAAGGCTCGTCATTGATTGGCATAAT
TTTGGATATTCCATACTTGCGTTAAAACTCGGCCCAACCCATCCATTGGTGAAAATGTCGATATGGTATGAGAAG
GTATTTTGCAAGTCTGCTTCGGCCCACTTTTGCGTCACCAATGCCATGGCATCCGTTCTCAAGAAGGATTTCAAC
CTTCCAGCTCCTGTCCTGCCACTGCACGACCGCCCTGCCAGTCACTTCAATCCTATCCTCGATCCCAATGCACGA
ATGGATTTCCTCACGACTCTACCGGAAACGAAAGAATTTCACTCATATTTGAAAGCAGGGTCTCTCCGTGTTCTA
GTCAGTTCAACGTCATGGACTGCGGATGAAGATTTCTCGGTCCTCATCGATGCCCTCCTCCGGTATTCGGAACTG
GCCATCACAGTGCAGCCTCACCTCCCCGAGATTTTGGCTATCATAACAGGAAAGGGCCCACAAAAGGAGATGTAT
TTGGAACAGATTGCGGCCCTTGAAAAGTCCAGCAAGTTACAAAAAGTCACAATTCGAACTGCGTGGCTGAGTGTA
CCAGAATATGCTCGGCTATTGGCATCCGCATCTCTAGGAGTTAGTCTGCATACCAGCAGCAGTGGGGTAGATCTG
CCCATGAAGGTTGTAGATATGTTCGGGGCTGGTCTTCCTGTTGTTGGGTGGGATCGTTTCGAAGCATGGCCCGAG
CTGGTCACTGAGGGCGTGAATGGGTTAGGCTTTGGAAGCTCAGAGGAGCTAGCTGAGCACTTGGTCGACCTGTTC
GGTGAGAACGACAAATTGGAAAGTCTTCGTCTAGGTGCCCAAAAAGAAAGCTCTCGCCGATGGGACGACGAATGG
GATCCTATTGCGGGGTCCCTTTTTGGGCTCACATAG
Transcript >Pro_DTO377G3_2|g5189.t1
ATGATCGAGACCTTCATCAGCATAGTGTTCGGCCTGTCTAGCGCCCTCACTGTGTTGATTCTGTTACTTCCTTCG
CAATATCAACCAGAACAAGCAGGGTCTCCAAGATCCGATGACGCAAAAAGGCGCAAGACATGTGTTCAAATACTT
GTTCTTGGTGACATTGGCCGAAGCCCGCGCATGCAGTATCATGCATTGAGCATTGCGAAGCATGGCGGGGAGGTG
GTAATTATTGGGTATAATGAATCTGATCCTCATCCTGATATCATATCTAACCCCAACATTTCGATTGTTCCGCTT
CGCCCGCATCCCGCTCTCCTACAGACCAGTAACAAGCTGCTGTTTACAATTTACGGGCCCTTGAAGGTACTATTC
CAGATCGCCTGTCTCTGGAAGTGTCTCGCATACACCACAAAACCGTCCCAATGGCTTTTGGTTCAGAACCCGCCT
TCCATTCCTACACTGGCTATAGCCTCCCTTGTGTGTTTCCTGCGGCAAACAAGGCTCGTCATTGATTGGCATAAT
TTTGGATATTCCATACTTGCGTTAAAACTCGGCCCAACCCATCCATTGGTGAAAATGTCGATATGGTATGAGAAG
GTATTTTGCAAGTCTGCTTCGGCCCACTTTTGCGTCACCAATGCCATGGCATCCGTTCTCAAGAAGGATTTCAAC
CTTCCAGCTCCTGTCCTGCCACTGCACGACCGCCCTGCCAGTCACTTCAATCCTATCCTCGATCCCAATGCACGA
ATGGATTTCCTCACGACTCTACCGGAAACGAAAGAATTTCACTCATATTTGAAAGCAGGGTCTCTCCGTGTTCTA
GTCAGTTCAACGTCATGGACTGCGGATGAAGATTTCTCGGTCCTCATCGATGCCCTCCTCCGGTATTCGGAACTG
GCCATCACAGTGCAGCCTCACCTCCCCGAGATTTTGGCTATCATAACAGGAAAGGGCCCACAAAAGGAGATGTAT
TTGGAACAGATTGCGGCCCTTGAAAAGTCCAGCAAGTTACAAAAAGTCACAATTCGAACTGCGTGGCTGAGTGTA
CCAGAATATGCTCGGCTATTGGCATCCGCATCTCTAGGAGTTAGTCTGCATACCAGCAGCAGTGGGGTAGATCTG
CCCATGAAGGTTGTAGATATGTTCGGGGCTGGTCTTCCTGTTGTTGGGTGGGATCGTTTCGAAGCATGGCCCGAG
CTGGTCACTGAGGGCGTGAATGGGTTAGGCTTTGGAAGCTCAGAGGAGCTAGCTGAGCACTTGGTCGACCTGTTC
GGTGAGAACGACAAATTGGAAAGTCTTCGTCTAGGTGCCCAAAAAGAAAGCTCTCGCCGATGGGACGACGAATGG
GATCCTATTGCGGGGTCCCTTTTTGGGCTCACATAG
Gene >Pro_DTO377G3_2|g5189.t1
ATGATCGAGACCTTCATCAGCATAGTGTTCGGCCTGTCTAGCGCCCTCACTGTGTTGATTCTGTTACTTCCTTCG
CAATATCAACCAGAACAAGCAGGGTCTCCAAGATCCGATGACGCAAAAAGGCGCAAGACATGTGTTCAAATACTT
GTTCTTGGTGACATTGGCCGAAGCCCGCGCATGCAGTATCATGCATTGAGCATTGCGAAGCATGGCGGGGAGGTG
GTAATTATTGGGTATAATGGTTAGTACAAACCCCTTGATACAGAACGTAAGATAGGATCGCTAACCACCGTTTAT
GAAACAGAATCTGATCCTCATCCTGATATCATATCTAACCCCAACATTTCGATTGTTCCGCTTCGCCCGCATCCC
GCTCTCCTACAGACCAGTAACAAGCTGCTGTTTACAATTTACGGGCCCTTGAAGGTACTATTCCAGATCGCCTGT
CTCTGGAAGTGTCTCGCATACACCACAAAACCGTCCCAATGGCTTTTGGTTCAGGTATGTCTGAAAGGGAGGTTC
CTCAATCTTCATTTGAAGTACTGACTCCCTCTTGAATAAAAGAACCCGCCTTCCATTCCTACACTGGCTATAGCC
TCCCTTGTGTGTTTCCTGCGGCAAACAAGGCTCGTCATTGATTGGCATAATTTTGGATATTCCATACTTGCGTTA
AAACTCGGCCCAACCCATCCATTGGTGAAAATGTCGATATGGTATGAGAAGGTATTTTGCAAGTCTGCTTCGGCC
CACTTTTGCGTCACCAATGCCATGGCATCCGTTCTCAAGAAGGATTTCAACCTTCCAGCTCCTGTCCTGCCACTG
CACGACCGCCCTGCCAGTCACTTCAATCCTATCCTCGATCCCAATGCACGAATGGATTTCCTCACGACTCTACCG
GAAACGAAAGAATTTCACTCATATTTGAAAGCAGGGTCTCTCCGTGTTCTAGTCAGTTCAACGTCATGGACTGCG
GATGAAGATTTCTCGGTCCTCATCGATGCCCTCCTCCGGTATTCGGAACTGGCCATCACAGTGCAGCCTCACCTC
CCCGAGATTTTGGCTATCATAACAGGAAAGGGCCCACAAAAGGAGATGTATTTGGAACAGATTGCGGCCCTTGAA
AAGTCCAGCAAGTTACAAAAAGTCACAATTCGAACTGCGTGGCTGAGTGTACCAGAATATGCTCGGCTATTGGCA
TCCGCATCTCTAGGAGTTAGTCTGCATACCAGCAGCAGTGGGGTAGATCTGCCCATGAAGGTTGTAGATATGTTC
GGGGCTGGTCTTCCTGTTGTTGGGTGGGATCGTTTCGAAGCATGGCCCGAGCTGGTCACTGAGGGCGTGAATGGG
TTAGGCTTTGGAAGCTCAGAGGAGCTAGCTGAGCACTTGGTCGACCTGTTCGGTGAGAACGACAAATTGGAAAGT
CTTCGTCTAGGTGCCCAAAAAGAAAGCTCTCGCCGATGGGACGACGAATGGGATCCTATTGCGGGGTCCCTTTTT
GGGCTCACATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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