© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5187.t1 |
| Gene name | |
| Location | scaffold_12:129142..130547 |
| Strand | + |
| Gene length (bp) | 1405 |
| Transcript length (bp) | 1293 |
| Coding sequence length (bp) | 1293 |
| Protein length (aa) | 431 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00108 | Thiolase_N | Thiolase, N-terminal domain | 4.2E-89 | 38 | 295 |
| PF02803 | Thiolase_C | Thiolase, C-terminal domain | 2.4E-40 | 306 | 425 |
| PF00109 | ketoacyl-synt | Beta-ketoacyl synthase, N-terminal domain | 4.0E-05 | 114 | 153 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | Yes |
| GO:0016746 | acyltransferase activity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 90.87 | 55.89 | 125.85 |
| 5d_25C | Five days - 25 degrees Celsius | 69.62 | 42.26 | 96.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 66.61 | 40.17 | 93.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 87.03 | 53.24 | 120.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 99.92 | 61.39 | 138.46 |
| 7d_30C | Seven days - 30 degrees Celsius | 67.90 | 41.14 | 94.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.238437 | no |
| 3d_25C | 7d_25C | 0.152787 | no |
| 3d_25C | 7d_15C | 0.732868 | no |
| 3d_25C | 7d_30C | 0.196058 | no |
| 3d_25C | 10d_25C | 0.896978 | no |
| 5d_25C | 7d_25C | 0.889967 | no |
| 5d_25C | 7d_15C | 0.085819 | no |
| 5d_25C | 7d_30C | 0.940770 | no |
| 5d_25C | 10d_25C | 0.359096 | no |
| 7d_25C | 7d_15C | 0.055327 | no |
| 7d_25C | 7d_30C | 0.956077 | no |
| 7d_25C | 10d_25C | 0.247647 | no |
| 7d_15C | 7d_30C | 0.071063 | no |
| 7d_15C | 10d_25C | 0.609021 | no |
| 7d_30C | 10d_25C | 0.305440 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5187.t1 MISAGMSARLPKRVFPAFCPQRQFSSARPTCKEIQEAYILSASRTPTTKFNGSFASVSAPELGAVAIKSALAKSK VPIEKITDVYMGNVLQGSVGQAPARQASIFAGLPSTVEATTINKVCASGLKAVSLAAQNIQLGLAEAQVAGGMEN MSRVPYYMARASQLPPFGEIKLEDGLIKDGLWDVYNNFHMGICAEHTAKNHSVSREEQDLYAIQSYERAQQAWKE NKFADEIAAVTVKGKKGDTIVDRDEGFENLRIDKLKGLKPAFLRDGSGTVTAGNASSMNDGASALILGNRDIARK YGGGSRVLARIVSSADAAVDPVDFPVAPSKAVPLALERAGITKDQVAVWEFNEAFAAVIKANEKILGLQNAKVNM LGGAISLGHPLGSSGSRILVTLLHQLQPGEYGVAAICNGGGAATAMVVQRLDRVD* |
| Coding | >Pro_DTO377G3_2|g5187.t1 ATGATTTCCGCAGGCATGTCTGCTCGTCTCCCCAAACGGGTCTTCCCCGCATTTTGCCCCCAGCGACAGTTCAGC TCTGCACGCCCGACATGCAAGGAGATTCAGGAAGCTTACATTCTGAGTGCATCTCGAACACCAACGACAAAGTTC AATGGTTCTTTTGCATCCGTATCAGCACCTGAGCTTGGCGCTGTTGCAATAAAATCCGCCCTAGCCAAGTCCAAG GTACCTATTGAGAAGATCACGGATGTGTATATGGGAAATGTTTTGCAGGGCTCAGTAGGCCAGGCACCTGCCCGT CAGGCGTCTATATTTGCCGGTCTCCCTTCCACTGTTGAAGCCACAACAATCAACAAGGTCTGCGCTTCTGGCTTG AAGGCTGTGTCACTTGCCGCACAAAATATTCAACTTGGCTTGGCAGAGGCACAAGTGGCTGGTGGTATGGAGAAC ATGAGTCGCGTCCCCTATTATATGGCACGTGCCAGCCAATTGCCACCCTTTGGTGAGATCAAGCTAGAGGATGGT CTCATCAAGGATGGTTTATGGGATGTTTACAACAATTTCCACATGGGTATCTGCGCAGAACATACTGCGAAGAAC CACAGCGTCTCGCGGGAGGAGCAGGATTTATATGCCATCCAGTCATACGAGCGCGCTCAGCAGGCATGGAAGGAG AACAAGTTCGCCGACGAGATTGCCGCGGTTACTGTGAAGGGCAAGAAAGGAGATACCATTGTCGACCGGGATGAG GGCTTCGAAAACTTGCGTATCGACAAGTTGAAGGGCCTGAAACCCGCCTTTCTACGAGATGGGAGTGGTACTGTA ACCGCTGGCAACGCATCTAGCATGAATGACGGAGCATCCGCTCTGATCTTGGGCAACAGGGATATTGCTCGCAAG TATGGCGGTGGCAGCCGTGTCTTGGCCCGTATTGTTTCTTCGGCCGATGCTGCCGTTGACCCTGTAGACTTCCCA GTGGCCCCTTCCAAAGCAGTTCCCCTGGCGCTGGAGCGTGCTGGAATCACCAAGGACCAAGTGGCGGTATGGGAA TTCAACGAGGCTTTTGCGGCTGTCATCAAAGCCAATGAAAAGATTCTCGGTTTGCAGAACGCCAAAGTCAACATG CTTGGAGGCGCCATCTCTCTCGGCCACCCTCTTGGCAGCTCAGGCTCACGTATCCTCGTCACCTTGCTCCACCAA TTGCAGCCCGGCGAGTATGGAGTGGCTGCGATCTGCAACGGCGGCGGTGCTGCAACTGCGATGGTTGTGCAGAGA TTGGATCGGGTGGATTGA |
| Transcript | >Pro_DTO377G3_2|g5187.t1 ATGATTTCCGCAGGCATGTCTGCTCGTCTCCCCAAACGGGTCTTCCCCGCATTTTGCCCCCAGCGACAGTTCAGC TCTGCACGCCCGACATGCAAGGAGATTCAGGAAGCTTACATTCTGAGTGCATCTCGAACACCAACGACAAAGTTC AATGGTTCTTTTGCATCCGTATCAGCACCTGAGCTTGGCGCTGTTGCAATAAAATCCGCCCTAGCCAAGTCCAAG GTACCTATTGAGAAGATCACGGATGTGTATATGGGAAATGTTTTGCAGGGCTCAGTAGGCCAGGCACCTGCCCGT CAGGCGTCTATATTTGCCGGTCTCCCTTCCACTGTTGAAGCCACAACAATCAACAAGGTCTGCGCTTCTGGCTTG AAGGCTGTGTCACTTGCCGCACAAAATATTCAACTTGGCTTGGCAGAGGCACAAGTGGCTGGTGGTATGGAGAAC ATGAGTCGCGTCCCCTATTATATGGCACGTGCCAGCCAATTGCCACCCTTTGGTGAGATCAAGCTAGAGGATGGT CTCATCAAGGATGGTTTATGGGATGTTTACAACAATTTCCACATGGGTATCTGCGCAGAACATACTGCGAAGAAC CACAGCGTCTCGCGGGAGGAGCAGGATTTATATGCCATCCAGTCATACGAGCGCGCTCAGCAGGCATGGAAGGAG AACAAGTTCGCCGACGAGATTGCCGCGGTTACTGTGAAGGGCAAGAAAGGAGATACCATTGTCGACCGGGATGAG GGCTTCGAAAACTTGCGTATCGACAAGTTGAAGGGCCTGAAACCCGCCTTTCTACGAGATGGGAGTGGTACTGTA ACCGCTGGCAACGCATCTAGCATGAATGACGGAGCATCCGCTCTGATCTTGGGCAACAGGGATATTGCTCGCAAG TATGGCGGTGGCAGCCGTGTCTTGGCCCGTATTGTTTCTTCGGCCGATGCTGCCGTTGACCCTGTAGACTTCCCA GTGGCCCCTTCCAAAGCAGTTCCCCTGGCGCTGGAGCGTGCTGGAATCACCAAGGACCAAGTGGCGGTATGGGAA TTCAACGAGGCTTTTGCGGCTGTCATCAAAGCCAATGAAAAGATTCTCGGTTTGCAGAACGCCAAAGTCAACATG CTTGGAGGCGCCATCTCTCTCGGCCACCCTCTTGGCAGCTCAGGCTCACGTATCCTCGTCACCTTGCTCCACCAA TTGCAGCCCGGCGAGTATGGAGTGGCTGCGATCTGCAACGGCGGCGGTGCTGCAACTGCGATGGTTGTGCAGAGA TTGGATCGGGTGGATTGA |
| Gene | >Pro_DTO377G3_2|g5187.t1 ATGATTTCCGCAGGCATGTCTGCTCGTCTCCCCAAACGGGTCTTCCCCGCATTTTGCCCCCAGCGACAGTTCAGC TCTGCACGCCCGACATGCAAGGAGATTCAGGAAGCTTACATTCTGAGTGCATCTCGAACACCAACGACAAAGGTG GGTACCTTTAGAGAAATCTCCTCTAGAAGAACAATTCGCTAACTCCCAAGGTAGTTCAATGGTTCTTTTGCATCC GTATCAGCACCTGAGCTTGGCGCTGTTGCAATAAAATCCGCCCTAGCCAAGTCCAAGGTACCTATTGAGAAGATC ACGGATGTGTATATGGGAAATGTTTTGCAGGGCTCAGTAGGCCAGGCACCTGCCCGTCAGGCGTCTATATTTGCC GGTCTCCCTTCCACTGTTGAAGCCACAACAATCAACAAGGTCTGCGCTTCTGGCTTGAAGGCTGTGTCACTTGCC GCACAAAATATTCAACTTGGCTTGGCAGAGGCACAAGTGGCTGGTGGTATGGAGAACATGAGTCGCGTCCCCTAT TATATGGCACGTGCCAGCCAATTGCCACCCTTTGGTGAGATCAAGCTAGAGGATGGTCTCATCAAGGATGGTTTA TGGGATGTTTACAACAATTTCCACATGGGTATCTGCGCAGAACATACTGCGAAGAACCACAGCGTCTCGCGGGAG GAGCAGGATTTATATGCCATCCAGTCATACGAGCGCGCTCAGCAGGCATGGAAGGAGAACAAGTTCGCCGACGAG ATTGCCGCGGTTACTGTGAAGGGCAAGAAAGGAGATACCATTGTCGACCGGGATGAGGGCTTCGAAAACTTGCGT ATCGACAAGTTGAAGGGCCTGAAACCCGCCTTTCTACGAGATGGGAGTGGTACTGTAACCGCTGGCAACGCATCT AGCATGAATGACGGAGCATCCGCTCTGATCTTGGGCAACAGGGATATTGCTCGCAAGTATGGCGGTGGCAGCCGT GTCTTGGCCCGTATTGTTTCTTCGGCCGATGCTGCCGTTGACCCTGTAGACTTCCCAGTGGCCCCTTCCAAAGCA GTTCCCCTGGCGCTGGAGCGTGCTGGAATCACCAAGGACCAAGTGGCGGTATGGGAATTCAACGAGGCTTTTGCG GCTGTCATCAAAGCCAATGAAAAGGTCAGTGCCGTATTTGTCTAACTTCCATACCAGATCTAATTTCTAGCTCCT ATAGATTCTCGGTTTGCAGAACGCCAAAGTCAACATGCTTGGAGGCGCCATCTCTCTCGGCCACCCTCTTGGCAG CTCAGGCTCACGTATCCTCGTCACCTTGCTCCACCAATTGCAGCCCGGCGAGTATGGAGTGGCTGCGATCTGCAA CGGCGGCGGTGCTGCAACTGCGATGGTTGTGCAGAGATTGGATCGGGTGGATTGA |