© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5186.t1 |
| Gene name | |
| Location | scaffold_12:127825..128575 |
| Strand | - |
| Gene length (bp) | 750 |
| Transcript length (bp) | 459 |
| Coding sequence length (bp) | 459 |
| Protein length (aa) | 153 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00179 | UQ_con | Ubiquitin-conjugating enzyme | 1.1E-51 | 8 | 144 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 210.29 | 123.29 | 297.29 |
| 5d_25C | Five days - 25 degrees Celsius | 271.46 | 162.93 | 379.99 |
| 7d_25C | Seven days - 25 degrees Celsius | 270.04 | 161.53 | 378.56 |
| 10d_25C | Ten days - 25 degrees Celsius | 370.69 | 225.31 | 516.07 |
| 7d_15C | Seven days - 15 degrees Celsius | 311.72 | 188.18 | 435.27 |
| 7d_30C | Seven days - 30 degrees Celsius | 286.97 | 171.62 | 402.32 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.291471 | no |
| 3d_25C | 7d_25C | 0.306203 | no |
| 3d_25C | 7d_15C | 0.065980 | no |
| 3d_25C | 7d_30C | 0.177767 | no |
| 3d_25C | 10d_25C | 0.004450 | yes |
| 5d_25C | 7d_25C | 0.988801 | no |
| 5d_25C | 7d_15C | 0.616122 | no |
| 5d_25C | 7d_30C | 0.870796 | no |
| 5d_25C | 10d_25C | 0.170122 | no |
| 7d_25C | 7d_15C | 0.595907 | no |
| 7d_25C | 7d_30C | 0.853335 | no |
| 7d_25C | 10d_25C | 0.164699 | no |
| 7d_15C | 7d_30C | 0.790775 | no |
| 7d_15C | 10d_25C | 0.500566 | no |
| 7d_30C | 10d_25C | 0.287046 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5186.t1 MSTSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMNFEEQYPNKPPGVKFISQ MFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYTKRVRETVEKSWE DN* |
| Coding | >Pro_DTO377G3_2|g5186.t1 ATGTCTACATCCGCCCGTCGTCGTCTGATGCGGGACTTCAAGCGCATGCAAACCGATCCCCCAGCTGGTGTCTCT GCATCTCCAGTCGCTGATAATGTCATGACATGGAATGCCGTCATCATCGGCCCCGCCGATACACCGTTCGAAGAT GGCACATTCCGCCTGGTCATGAATTTTGAAGAACAATACCCCAACAAACCCCCGGGTGTGAAATTCATAAGCCAA ATGTTCCATCCTAATGTGTACGGGACCGGCGAGCTCTGTCTCGATATTCTGCAGAACCGCTGGAGTCCGACATAT GATGTGGCGGCTATTCTTACTAGTATTCAAAGTCTTCTGAATGACCCCAACACCTCGTCTCCGGCCAACGTCGAG GCCTCGAACCTCTACAAAGACAACCGTAAAGAGTACACCAAGCGAGTGCGTGAGACGGTCGAGAAAAGCTGGGAG GACAACTGA |
| Transcript | >Pro_DTO377G3_2|g5186.t1 ATGTCTACATCCGCCCGTCGTCGTCTGATGCGGGACTTCAAGCGCATGCAAACCGATCCCCCAGCTGGTGTCTCT GCATCTCCAGTCGCTGATAATGTCATGACATGGAATGCCGTCATCATCGGCCCCGCCGATACACCGTTCGAAGAT GGCACATTCCGCCTGGTCATGAATTTTGAAGAACAATACCCCAACAAACCCCCGGGTGTGAAATTCATAAGCCAA ATGTTCCATCCTAATGTGTACGGGACCGGCGAGCTCTGTCTCGATATTCTGCAGAACCGCTGGAGTCCGACATAT GATGTGGCGGCTATTCTTACTAGTATTCAAAGTCTTCTGAATGACCCCAACACCTCGTCTCCGGCCAACGTCGAG GCCTCGAACCTCTACAAAGACAACCGTAAAGAGTACACCAAGCGAGTGCGTGAGACGGTCGAGAAAAGCTGGGAG GACAACTGA |
| Gene | >Pro_DTO377G3_2|g5186.t1 ATGTCTACATCCGCCCGTCGTCGTCTGATGCGGGACTTCAAGGTACGCGTCAATATTGTCACCTCGCCTTAGGCT ATTCGAGACGTTTCTACTGTACCCATAAATAATCTCATATAAAGCTATCCCTATGAGCCCGATTTGCTTCTTAAA TTCTTCCCCGGTGTTCTGTGTCCAAGATGATTTGCCCCGCTAACATTTCCATACTCACAGCGCATGCAAACCGAT CCCCCAGCTGGTGTCTCTGCATCTCCAGTCGCTGATAATGTCATGACATGGTATGTGTCTTCCGCGGCATGATTT GAGGCTCTTGACAATGATTCTGATGAAATGCTAGGAATGCCGTCATCATCGGCCCCGCCGATACACCGTTCGAAG ATGGCACATTCCGCCTGGTCATGAATTTTGAAGAACAATACCCCAACAAACCCCCGGGTGTGAAATTCATAAGCC AAATGTTCCATCCTAATGTGTACGGGACCGGCGAGCTCTGTCTCGATATTCTGCAGAACCGCTGGAGTCCGACAT ATGATGTGGCGGCTATTCTTACTAGTATTCAAAGGTATCGCTGGCTTGTCTATGAAAGATCACTATACAAATTCT AATGTGCGGCTCGTCAATTCTAGTCTTCTGAATGACCCCAACACCTCGTCTCCGGCCAACGTCGAGGCCTCGAAC CTCTACAAAGACAACCGTAAAGAGTACACCAAGCGAGTGCGTGAGACGGTCGAGAAAAGCTGGGAGGACAACTGA |