Protein ID | Pro_DTO377G3_2|g5184.t1 |
Gene name | |
Location | scaffold_12:122373..123268 |
Strand | + |
Gene length (bp) | 895 |
Transcript length (bp) | 573 |
Coding sequence length (bp) | 573 |
Protein length (aa) | 191 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00036 | EF-hand_1 | EF hand | 2.3E-06 | 67 | 90 |
PF00036 | EF-hand_1 | EF hand | 3.0E-08 | 101 | 126 |
PF00036 | EF-hand_1 | EF hand | 2.3E-06 | 149 | 172 |
PF13499 | EF-hand_7 | EF-hand domain pair | 2.2E-15 | 99 | 171 |
PF13405 | EF-hand_6 | EF-hand domain | 4.3E-06 | 66 | 90 |
PF13405 | EF-hand_6 | EF-hand domain | 4.8E-05 | 149 | 171 |
PF13202 | EF-hand_5 | EF hand | 1.4E-03 | 68 | 85 |
PF13202 | EF-hand_5 | EF hand | 6.2E-05 | 104 | 123 |
PF13202 | EF-hand_5 | EF hand | 4.2E-04 | 150 | 171 |
PF13833 | EF-hand_8 | EF-hand domain pair | 8.0E-06 | 39 | 86 |
PF13833 | EF-hand_8 | EF-hand domain pair | 4.2E-03 | 98 | 123 |
PF13833 | EF-hand_8 | EF-hand domain pair | 1.6E-02 | 130 | 173 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005509 | calcium ion binding | Yes |
GO:0005488 | binding | No |
GO:0043167 | ion binding | No |
GO:0046872 | metal ion binding | No |
GO:0043169 | cation binding | No |
GO:0003674 | molecular_function | No |
Orthofinder run ID | 2 |
Orthogroup | 5363 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5184.t1 MGKSQSKLSPTQLDELQRATHFDKKELQQWYKGFLKDCPSGTLTKEEFQKIYRQFFPFGDPSSFANYVFRVFDSD NSGMIDFKEFICALSVTSRGKMEDKLDWAFQLYDIDGDGKITYEEMLAIVEAIYKMVGSMVKLPEDEDTPEKRVR KIFRMMDKDENGSLDIDEFKEGSKRDETIVSALSLYDGLV* |
Coding | >Pro_DTO377G3_2|g5184.t1 ATGGGAAAGTCTCAATCTAAGCTTTCACCGACGCAGCTCGATGAGCTGCAAAGGGCAACACATTTCGATAAGAAG GAGCTACAACAATGGTATAAAGGATTTCTCAAGGACTGCCCGTCTGGTACTCTGACCAAGGAGGAGTTTCAGAAA ATATACCGGCAGTTCTTTCCCTTCGGCGACCCGTCATCCTTTGCCAATTATGTTTTTCGCGTTTTCGACTCGGAC AACAGTGGTATGATCGATTTCAAAGAATTTATCTGCGCCCTTTCCGTGACTTCGCGAGGCAAGATGGAGGATAAA CTGGATTGGGCATTCCAATTGTACGATATTGACGGCGATGGGAAAATCACCTATGAAGAAATGCTGGCCATTGTC GAGGCGATCTATAAGATGGTTGGATCCATGGTGAAACTCCCCGAGGATGAAGATACCCCAGAGAAACGCGTACGA AAGATCTTCCGCATGATGGACAAGGATGAAAATGGCAGTCTTGACATCGACGAGTTCAAAGAAGGCAGCAAACGG GATGAAACCATCGTCAGTGCTTTGTCGCTTTACGACGGATTAGTTTAG |
Transcript | >Pro_DTO377G3_2|g5184.t1 ATGGGAAAGTCTCAATCTAAGCTTTCACCGACGCAGCTCGATGAGCTGCAAAGGGCAACACATTTCGATAAGAAG GAGCTACAACAATGGTATAAAGGATTTCTCAAGGACTGCCCGTCTGGTACTCTGACCAAGGAGGAGTTTCAGAAA ATATACCGGCAGTTCTTTCCCTTCGGCGACCCGTCATCCTTTGCCAATTATGTTTTTCGCGTTTTCGACTCGGAC AACAGTGGTATGATCGATTTCAAAGAATTTATCTGCGCCCTTTCCGTGACTTCGCGAGGCAAGATGGAGGATAAA CTGGATTGGGCATTCCAATTGTACGATATTGACGGCGATGGGAAAATCACCTATGAAGAAATGCTGGCCATTGTC GAGGCGATCTATAAGATGGTTGGATCCATGGTGAAACTCCCCGAGGATGAAGATACCCCAGAGAAACGCGTACGA AAGATCTTCCGCATGATGGACAAGGATGAAAATGGCAGTCTTGACATCGACGAGTTCAAAGAAGGCAGCAAACGG GATGAAACCATCGTCAGTGCTTTGTCGCTTTACGACGGATTAGTTTAG |
Gene | >Pro_DTO377G3_2|g5184.t1 ATGGGAAAGTCGTAAGTTCTAACCATCCTCTCACCCTGTTTGAAATGGCGGTGGAACGGACTCCGCGGATCTCAG GATGCGCGTCATCTCGGGAGCAAGCCAGTACCAAAGGCCCCGTACTTTTGGTCTGAGAATCACGCTGAATACCCT GCCTACATTCAAAGGAGAACCCTGCGCTGACCCTCGTGTTTCACATTCTACAGTCAATCTAAGCTTTCACCGACG CAGCTCGATGAGCTGCAAAGGGCAACACATTTCGATAAGAAGGAGCTACAACAATGGTATAAAGGTATGCGGATA TATGGGAAACATACGAAACATCAAGTCTCAAGAGCGATCGCTGATTATGGGCATGTCTAGGATTTCTCAAGGACT GCCCGTCTGGTACTCTGACCAAGGAGGAGTTTCAGAAAATATACCGGCAGTTCTTTCCCTTCGGCGACCCGTCAT CCTTTGCCAATTATGTTTTTCGCGTTTTCGACTCGGACAACAGTGGTATGATCGATTTCAAAGAATTTATCTGCG CCCTTTCCGTGACTTCGCGAGGCAAGATGGAGGATAAACTGGATTGGGCATTCCAATTGTACGATATTGACGGCG ATGGGAAAATCACCTATGAAGAAATGCTGGCCATTGTCGAGGCGATCTATAAGATGGTATGCACAATGCAGTTCG TGAAATCACGATACCCTTAAAAGAACTAATGAGTATACAGGTTGGATCCATGGTGAAACTCCCCGAGGATGAAGA TACCCCAGAGAAACGCGTACGAAAGATCTTCCGCATGATGGACAAGGATGAAAATGGCAGTCTTGACATCGACGA GTTCAAAGAAGGCAGCAAACGGGATGAAACCATCGTCAGTGCTTTGTCGCTTTACGACGGATTAGTTTAG |