© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5184.t1 |
| Gene name | |
| Location | scaffold_12:122373..123268 |
| Strand | + |
| Gene length (bp) | 895 |
| Transcript length (bp) | 573 |
| Coding sequence length (bp) | 573 |
| Protein length (aa) | 191 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00036 | EF-hand_1 | EF hand | 2.3E-06 | 67 | 90 |
| PF00036 | EF-hand_1 | EF hand | 3.0E-08 | 101 | 126 |
| PF00036 | EF-hand_1 | EF hand | 2.3E-06 | 149 | 172 |
| PF13499 | EF-hand_7 | EF-hand domain pair | 2.2E-15 | 99 | 171 |
| PF13405 | EF-hand_6 | EF-hand domain | 4.3E-06 | 66 | 90 |
| PF13405 | EF-hand_6 | EF-hand domain | 4.8E-05 | 149 | 171 |
| PF13202 | EF-hand_5 | EF hand | 1.4E-03 | 68 | 85 |
| PF13202 | EF-hand_5 | EF hand | 6.2E-05 | 104 | 123 |
| PF13202 | EF-hand_5 | EF hand | 4.2E-04 | 150 | 171 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 8.0E-06 | 39 | 86 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 4.2E-03 | 98 | 123 |
| PF13833 | EF-hand_8 | EF-hand domain pair | 1.6E-02 | 130 | 173 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005509 | calcium ion binding | Yes |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043169 | cation binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 69 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5184.t1 MGKSQSKLSPTQLDELQRATHFDKKELQQWYKGFLKDCPSGTLTKEEFQKIYRQFFPFGDPSSFANYVFRVFDSD NSGMIDFKEFICALSVTSRGKMEDKLDWAFQLYDIDGDGKITYEEMLAIVEAIYKMVGSMVKLPEDEDTPEKRVR KIFRMMDKDENGSLDIDEFKEGSKRDETIVSALSLYDGLV* |
| Coding | >Pro_DTO377G3_2|g5184.t1 ATGGGAAAGTCTCAATCTAAGCTTTCACCGACGCAGCTCGATGAGCTGCAAAGGGCAACACATTTCGATAAGAAG GAGCTACAACAATGGTATAAAGGATTTCTCAAGGACTGCCCGTCTGGTACTCTGACCAAGGAGGAGTTTCAGAAA ATATACCGGCAGTTCTTTCCCTTCGGCGACCCGTCATCCTTTGCCAATTATGTTTTTCGCGTTTTCGACTCGGAC AACAGTGGTATGATCGATTTCAAAGAATTTATCTGCGCCCTTTCCGTGACTTCGCGAGGCAAGATGGAGGATAAA CTGGATTGGGCATTCCAATTGTACGATATTGACGGCGATGGGAAAATCACCTATGAAGAAATGCTGGCCATTGTC GAGGCGATCTATAAGATGGTTGGATCCATGGTGAAACTCCCCGAGGATGAAGATACCCCAGAGAAACGCGTACGA AAGATCTTCCGCATGATGGACAAGGATGAAAATGGCAGTCTTGACATCGACGAGTTCAAAGAAGGCAGCAAACGG GATGAAACCATCGTCAGTGCTTTGTCGCTTTACGACGGATTAGTTTAG |
| Transcript | >Pro_DTO377G3_2|g5184.t1 ATGGGAAAGTCTCAATCTAAGCTTTCACCGACGCAGCTCGATGAGCTGCAAAGGGCAACACATTTCGATAAGAAG GAGCTACAACAATGGTATAAAGGATTTCTCAAGGACTGCCCGTCTGGTACTCTGACCAAGGAGGAGTTTCAGAAA ATATACCGGCAGTTCTTTCCCTTCGGCGACCCGTCATCCTTTGCCAATTATGTTTTTCGCGTTTTCGACTCGGAC AACAGTGGTATGATCGATTTCAAAGAATTTATCTGCGCCCTTTCCGTGACTTCGCGAGGCAAGATGGAGGATAAA CTGGATTGGGCATTCCAATTGTACGATATTGACGGCGATGGGAAAATCACCTATGAAGAAATGCTGGCCATTGTC GAGGCGATCTATAAGATGGTTGGATCCATGGTGAAACTCCCCGAGGATGAAGATACCCCAGAGAAACGCGTACGA AAGATCTTCCGCATGATGGACAAGGATGAAAATGGCAGTCTTGACATCGACGAGTTCAAAGAAGGCAGCAAACGG GATGAAACCATCGTCAGTGCTTTGTCGCTTTACGACGGATTAGTTTAG |
| Gene | >Pro_DTO377G3_2|g5184.t1 ATGGGAAAGTCGTAAGTTCTAACCATCCTCTCACCCTGTTTGAAATGGCGGTGGAACGGACTCCGCGGATCTCAG GATGCGCGTCATCTCGGGAGCAAGCCAGTACCAAAGGCCCCGTACTTTTGGTCTGAGAATCACGCTGAATACCCT GCCTACATTCAAAGGAGAACCCTGCGCTGACCCTCGTGTTTCACATTCTACAGTCAATCTAAGCTTTCACCGACG CAGCTCGATGAGCTGCAAAGGGCAACACATTTCGATAAGAAGGAGCTACAACAATGGTATAAAGGTATGCGGATA TATGGGAAACATACGAAACATCAAGTCTCAAGAGCGATCGCTGATTATGGGCATGTCTAGGATTTCTCAAGGACT GCCCGTCTGGTACTCTGACCAAGGAGGAGTTTCAGAAAATATACCGGCAGTTCTTTCCCTTCGGCGACCCGTCAT CCTTTGCCAATTATGTTTTTCGCGTTTTCGACTCGGACAACAGTGGTATGATCGATTTCAAAGAATTTATCTGCG CCCTTTCCGTGACTTCGCGAGGCAAGATGGAGGATAAACTGGATTGGGCATTCCAATTGTACGATATTGACGGCG ATGGGAAAATCACCTATGAAGAAATGCTGGCCATTGTCGAGGCGATCTATAAGATGGTATGCACAATGCAGTTCG TGAAATCACGATACCCTTAAAAGAACTAATGAGTATACAGGTTGGATCCATGGTGAAACTCCCCGAGGATGAAGA TACCCCAGAGAAACGCGTACGAAAGATCTTCCGCATGATGGACAAGGATGAAAATGGCAGTCTTGACATCGACGA GTTCAAAGAAGGCAGCAAACGGGATGAAACCATCGTCAGTGCTTTGTCGCTTTACGACGGATTAGTTTAG |