© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5181.t1 |
| Gene name | |
| Location | scaffold_12:117001..117754 |
| Strand | - |
| Gene length (bp) | 753 |
| Transcript length (bp) | 636 |
| Coding sequence length (bp) | 636 |
| Protein length (aa) | 212 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 91 | 110 | 19 |
| 2 | 154 | 176 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 365.75 | 223.20 | 508.30 |
| 5d_25C | Five days - 25 degrees Celsius | 468.64 | 282.17 | 655.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 433.70 | 258.99 | 608.42 |
| 10d_25C | Ten days - 25 degrees Celsius | 573.16 | 342.91 | 803.41 |
| 7d_15C | Seven days - 15 degrees Celsius | 520.29 | 305.14 | 735.43 |
| 7d_30C | Seven days - 30 degrees Celsius | 392.98 | 232.27 | 553.69 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.291320 | no |
| 3d_25C | 7d_25C | 0.513396 | no |
| 3d_25C | 7d_15C | 0.115508 | no |
| 3d_25C | 7d_30C | 0.816529 | no |
| 3d_25C | 10d_25C | 0.030434 | yes |
| 5d_25C | 7d_25C | 0.806086 | no |
| 5d_25C | 7d_15C | 0.729228 | no |
| 5d_25C | 7d_30C | 0.496487 | no |
| 5d_25C | 10d_25C | 0.425586 | no |
| 7d_25C | 7d_15C | 0.493016 | no |
| 7d_25C | 7d_30C | 0.739065 | no |
| 7d_25C | 10d_25C | 0.232935 | no |
| 7d_15C | 7d_30C | 0.237381 | no |
| 7d_15C | 10d_25C | 0.742223 | no |
| 7d_30C | 10d_25C | 0.080003 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5181.t1 MENPVADIPTVIRGLTQSPPSFQETVLHRYFTNNVSFTHPFCRVPSFEGSRWWVSKIFQWYKIMSPRIELEIHSI AFDEDKLKLYVNMSQIFTIWLVPFHVAPVTLTTVLDLTYDSVKSDATTNGDHKLYYISKQEDLYQTSEFVKFIMP HIGYWIIFGWHLIASLFCLLGVTLLWPILWLEEKRYIPDRFLRGGNWAYNMEKKIPEIKGQ* |
| Coding | >Pro_DTO377G3_2|g5181.t1 ATGGAGAACCCAGTGGCTGATATACCTACCGTTATCCGGGGTCTAACACAGTCGCCGCCATCTTTTCAAGAAACC GTCCTTCACCGGTATTTTACCAACAATGTATCCTTTACTCATCCATTCTGCCGTGTGCCCAGCTTTGAAGGTAGC AGATGGTGGGTTTCAAAGATATTTCAATGGTATAAGATCATGTCACCCCGGATCGAGCTAGAGATCCATTCTATT GCTTTTGATGAAGATAAACTCAAACTCTATGTGAATATGTCACAGATCTTCACCATCTGGCTTGTTCCCTTCCAT GTCGCTCCGGTGACTCTCACTACGGTCTTGGACCTGACGTACGATTCGGTCAAAAGCGATGCTACGACCAATGGC GACCACAAGCTTTACTACATTTCCAAGCAAGAAGATCTATATCAAACATCGGAGTTTGTCAAGTTTATCATGCCG CATATCGGGTATTGGATTATTTTTGGTTGGCATCTCATTGCAAGCCTTTTCTGTCTCCTGGGTGTGACTTTGCTA TGGCCTATACTCTGGCTAGAGGAGAAGCGTTATATCCCCGATCGCTTTTTGCGAGGGGGAAATTGGGCTTACAAT ATGGAGAAGAAGATTCCAGAAATTAAAGGGCAATGA |
| Transcript | >Pro_DTO377G3_2|g5181.t1 ATGGAGAACCCAGTGGCTGATATACCTACCGTTATCCGGGGTCTAACACAGTCGCCGCCATCTTTTCAAGAAACC GTCCTTCACCGGTATTTTACCAACAATGTATCCTTTACTCATCCATTCTGCCGTGTGCCCAGCTTTGAAGGTAGC AGATGGTGGGTTTCAAAGATATTTCAATGGTATAAGATCATGTCACCCCGGATCGAGCTAGAGATCCATTCTATT GCTTTTGATGAAGATAAACTCAAACTCTATGTGAATATGTCACAGATCTTCACCATCTGGCTTGTTCCCTTCCAT GTCGCTCCGGTGACTCTCACTACGGTCTTGGACCTGACGTACGATTCGGTCAAAAGCGATGCTACGACCAATGGC GACCACAAGCTTTACTACATTTCCAAGCAAGAAGATCTATATCAAACATCGGAGTTTGTCAAGTTTATCATGCCG CATATCGGGTATTGGATTATTTTTGGTTGGCATCTCATTGCAAGCCTTTTCTGTCTCCTGGGTGTGACTTTGCTA TGGCCTATACTCTGGCTAGAGGAGAAGCGTTATATCCCCGATCGCTTTTTGCGAGGGGGAAATTGGGCTTACAAT ATGGAGAAGAAGATTCCAGAAATTAAAGGGCAATGA |
| Gene | >Pro_DTO377G3_2|g5181.t1 ATGGAGAACCCAGGTGCGTTATCGATCTGATATTTTGGATTCATCAGCTAATTCCTTCAGTGGCTGATATACCTA CCGTTATCCGGGGTCTAACACAGTCGCCGCCATCTTTTCAAGAAACCGTCCTTCACCGGTATTTTACCAACAATG TATCCTTTACTCATCCATTCTGCCGTGTGCCCAGCTTTGAAGGTAGCAGATGGTGGGTTTCAAAGATATTTCAAT GGTATAAGATCATGTCACCCCGGATCGAGCTAGAGATCCATTCTATTGGTATGTCAACAGGAAACTTCTAAGGTT GTGGACTTCATAATTTTGACTTCAGACTCTGATAATTCTTTAGCTTTTGATGAAGATAAACTCAAACTCTATGTG AATATGTCACAGATCTTCACCATCTGGCTTGTTCCCTTCCATGTCGCTCCGGTGACTCTCACTACGGTCTTGGAC CTGACGTACGATTCGGTCAAAAGCGATGCTACGACCAATGGCGACCACAAGCTTTACTACATTTCCAAGCAAGAA GATCTATATCAAACATCGGAGTTTGTCAAGTTTATCATGCCGCATATCGGGTATTGGATTATTTTTGGTTGGCAT CTCATTGCAAGCCTTTTCTGTCTCCTGGGTGTGACTTTGCTATGGCCTATACTCTGGCTAGAGGAGAAGCGTTAT ATCCCCGATCGCTTTTTGCGAGGGGGAAATTGGGCTTACAATATGGAGAAGAAGATTCCAGAAATTAAAGGGCAA TGA |