Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5167.t1
Gene name
Locationscaffold_12:79292..80788
Strand-
Gene length (bp)1496
Transcript length (bp)1434
Coding sequence length (bp)1434
Protein length (aa) 478

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01490 Aa_trans Transmembrane amino acid transporter protein 1.4E-47 58 455

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 60 0.45

Transmembrane Domains

Domain # Start End Length
1 62 84 22
2 88 110 22
3 141 163 22
4 173 195 22
5 202 224 22
6 244 263 19
7 283 305 22
8 325 347 22
9 368 390 22
10 395 417 22
11 430 452 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 199.52 119.78 279.25
5d_25C Five days - 25 degrees Celsius 103.52 63.27 143.78
7d_25C Seven days - 25 degrees Celsius 89.77 55.01 124.52
10d_25C Ten days - 25 degrees Celsius 62.90 38.12 87.69
7d_15C Seven days - 15 degrees Celsius 124.06 75.74 172.37
7d_30C Seven days - 30 degrees Celsius 89.49 54.92 124.06

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.001278 yes
3d_25C 7d_25C 0.000700 yes
3d_25C 7d_15C 0.021417 yes
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.600085 no
5d_25C 7d_15C 0.478002 no
5d_25C 7d_30C 0.581775 no
5d_25C 10d_25C 0.014971 yes
7d_25C 7d_15C 0.150713 no
7d_25C 7d_30C 0.992831 no
7d_25C 10d_25C 0.097175 no
7d_15C 7d_30C 0.139728 no
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.096197 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5167.t1
MGFENISNDHDTDKVMETEGEKAAYAPPPPFEGDMVGEMSEAERNLYDHGINKFNRLGWKRLTVVLIVEAIALGS
LSVPSTFATLGMVAGVICCVGIGLIAIYTSYIVGMVKLAFPEVANYADAGRLLGHRLGCGRFAYELVNAMLGLQL
IFLTASHCLTGTIAFLDITKSGICSIIFAVVSAVILLLLAIPPSFTEVAILGYVDFVSIIAAIGITIIGTGVQAT
NSPGGLSGVAWSAWPKDNISFTEAFIAVTNIIFAYSFAMCQFSFMDEMHTPRDFIKSIWTLGITEIVIYTITGAT
IYAFVGQDVSSPALTSAGTTLSRIAYGIALPVIFISGSINTVVFGRVVHGRIFANSPIRFINTKMGWLTWLAVIT
AATVVAFIIAEVIPFFNDLLSISSALFISGFTFYFPAMMWFMLLRKGSWKEPKNLILAVINALIFLIGMVVLAGG
TYSSIDDIIIKYAKGEVRGVFSCGAPE*
Coding >Pro_DTO377G3_2|g5167.t1
ATGGGCTTCGAAAACATCTCTAACGACCATGACACCGACAAGGTGATGGAAACGGAAGGCGAGAAGGCCGCATAT
GCTCCCCCACCGCCGTTTGAGGGGGACATGGTCGGGGAAATGAGCGAGGCTGAGAGGAACCTGTATGACCACGGT
ATCAACAAGTTCAATCGTCTCGGTTGGAAGCGACTCACTGTCGTCCTCATCGTCGAGGCGATTGCACTCGGTAGT
TTGTCGGTTCCCTCCACCTTTGCAACACTCGGCATGGTCGCCGGTGTGATCTGCTGTGTGGGCATCGGTCTCATC
GCCATCTATACCAGTTACATTGTCGGAATGGTCAAATTGGCCTTCCCCGAGGTTGCCAACTATGCTGATGCGGGT
CGATTGCTGGGCCATCGGCTAGGGTGTGGTCGCTTTGCATATGAGCTAGTCAATGCGATGCTCGGTCTTCAACTT
ATCTTTCTCACGGCCTCGCACTGTCTGACGGGAACCATCGCATTCCTCGACATCACCAAAAGCGGCATTTGCTCG
ATCATCTTTGCCGTGGTTTCTGCCGTCATCCTGCTCCTACTCGCCATTCCGCCTAGTTTCACCGAGGTGGCAATT
CTAGGCTATGTTGATTTCGTATCCATCATCGCTGCCATTGGAATCACAATTATCGGGACGGGTGTGCAGGCGACG
AACTCGCCCGGTGGACTCTCCGGAGTAGCATGGTCTGCGTGGCCGAAGGATAACATCTCCTTTACTGAAGCCTTC
ATCGCTGTGACGAACATAATTTTCGCCTACAGTTTTGCCATGTGCCAATTCTCCTTTATGGACGAAATGCACACT
CCTCGAGACTTTATTAAGTCGATCTGGACGCTGGGTATCACTGAGATCGTCATCTACACCATCACTGGTGCTACA
ATCTACGCCTTTGTTGGCCAGGATGTGTCCAGCCCTGCACTTACCTCTGCCGGAACTACCCTCAGCCGCATTGCG
TATGGCATTGCTCTCCCTGTGATCTTCATTAGCGGTTCGATCAACACCGTGGTATTTGGGCGTGTGGTGCATGGT
CGCATCTTCGCCAACTCCCCCATTCGCTTCATCAACACTAAGATGGGCTGGCTGACATGGCTGGCGGTGATCACG
GCCGCCACAGTTGTGGCATTCATCATTGCCGAGGTGATACCTTTTTTCAACGACTTGCTTTCAATTTCTTCTGCT
CTTTTTATCTCCGGATTCACCTTCTACTTCCCTGCCATGATGTGGTTCATGCTCCTTCGGAAAGGGAGTTGGAAA
GAGCCCAAGAACTTGATACTGGCAGTCATCAATGCGCTGATTTTCCTGATCGGTATGGTGGTACTTGCTGGAGGA
ACATATTCCAGCATTGATGATATCATAATCAAGTACGCCAAAGGAGAAGTTCGTGGCGTCTTTTCGTGCGGTGCT
CCCGAGTAA
Transcript >Pro_DTO377G3_2|g5167.t1
ATGGGCTTCGAAAACATCTCTAACGACCATGACACCGACAAGGTGATGGAAACGGAAGGCGAGAAGGCCGCATAT
GCTCCCCCACCGCCGTTTGAGGGGGACATGGTCGGGGAAATGAGCGAGGCTGAGAGGAACCTGTATGACCACGGT
ATCAACAAGTTCAATCGTCTCGGTTGGAAGCGACTCACTGTCGTCCTCATCGTCGAGGCGATTGCACTCGGTAGT
TTGTCGGTTCCCTCCACCTTTGCAACACTCGGCATGGTCGCCGGTGTGATCTGCTGTGTGGGCATCGGTCTCATC
GCCATCTATACCAGTTACATTGTCGGAATGGTCAAATTGGCCTTCCCCGAGGTTGCCAACTATGCTGATGCGGGT
CGATTGCTGGGCCATCGGCTAGGGTGTGGTCGCTTTGCATATGAGCTAGTCAATGCGATGCTCGGTCTTCAACTT
ATCTTTCTCACGGCCTCGCACTGTCTGACGGGAACCATCGCATTCCTCGACATCACCAAAAGCGGCATTTGCTCG
ATCATCTTTGCCGTGGTTTCTGCCGTCATCCTGCTCCTACTCGCCATTCCGCCTAGTTTCACCGAGGTGGCAATT
CTAGGCTATGTTGATTTCGTATCCATCATCGCTGCCATTGGAATCACAATTATCGGGACGGGTGTGCAGGCGACG
AACTCGCCCGGTGGACTCTCCGGAGTAGCATGGTCTGCGTGGCCGAAGGATAACATCTCCTTTACTGAAGCCTTC
ATCGCTGTGACGAACATAATTTTCGCCTACAGTTTTGCCATGTGCCAATTCTCCTTTATGGACGAAATGCACACT
CCTCGAGACTTTATTAAGTCGATCTGGACGCTGGGTATCACTGAGATCGTCATCTACACCATCACTGGTGCTACA
ATCTACGCCTTTGTTGGCCAGGATGTGTCCAGCCCTGCACTTACCTCTGCCGGAACTACCCTCAGCCGCATTGCG
TATGGCATTGCTCTCCCTGTGATCTTCATTAGCGGTTCGATCAACACCGTGGTATTTGGGCGTGTGGTGCATGGT
CGCATCTTCGCCAACTCCCCCATTCGCTTCATCAACACTAAGATGGGCTGGCTGACATGGCTGGCGGTGATCACG
GCCGCCACAGTTGTGGCATTCATCATTGCCGAGGTGATACCTTTTTTCAACGACTTGCTTTCAATTTCTTCTGCT
CTTTTTATCTCCGGATTCACCTTCTACTTCCCTGCCATGATGTGGTTCATGCTCCTTCGGAAAGGGAGTTGGAAA
GAGCCCAAGAACTTGATACTGGCAGTCATCAATGCGCTGATTTTCCTGATCGGTATGGTGGTACTTGCTGGAGGA
ACATATTCCAGCATTGATGATATCATAATCAAGTACGCCAAAGGAGAAGTTCGTGGCGTCTTTTCGTGCGGTGCT
CCCGAGTAA
Gene >Pro_DTO377G3_2|g5167.t1
ATGGGCTTCGAAAACATCTCTAACGACCATGACACCGACAAGGTGATGGAAACGGAAGGCGAGAAGGCCGCATAT
GCTCCCCCACCGCCGTTTGAGGGGGACATGGTCGGGGAAATGAGCGAGGCTGAGAGGAACCTGTATGACCACGGT
ATCAACAAGTTCAATCGTCTCGGTTGGAAGCGACTCACTGTCGTCCTCATCGTCGAGGCGATTGCACTCGGTAGT
TTGTCGGTTCCCTCCACCTTTGCAACACTCGGCATGGTCGCCGGTGTGATCTGCTGTGTGGGCATCGGTCTCATC
GCCATCTATACCAGTTACATTGTCGGAATGGTCAAATTGGCCTTCCCCGAGGTTGCCAACTATGCTGATGCGGGT
CGATTGCTGGGCCATCGGCTAGGGTGTGGTCGCTTTGCATATGAGCTAGTCAATGCGATGCTCGGTCTTCAACTT
ATCTTTCTCACGGCCTCGCACTGTCTGACGGGAACCATCGCATTCCTCGACATCACCAAAAGCGGCATTTGCTCG
ATCATCTTTGCCGTGGTTTCTGCCGTCATCCTGCTCCTACTCGCCATTCCGCCTAGTTTCACCGAGGTGGCAATT
CTAGGCTATGTTGATTTCGTATCCATCATCGCTGCCATTGGAATCACAATTATCGGGACGGGTGTGCAGGCGACG
AACTCGCCCGGTGGACTCTCCGGAGTAGCATGGTCTGCGTGGCCGAAGGATAACATCTCCTTTACTGAAGCCTTC
ATCGCTGTGACGAACATAATTTTCGCCTACAGTTTTGCCATGTGCCAATTCTCCTTTATGGACGAAATGCACACT
CCTCGAGACTTTATTAAGTCGATCTGGACGCTGGGTATCACTGAGATCGTCATCTACACCATCACTGGTGCTACA
ATCTACGCCTTTGTTGGCCAGGATGTGTCCAGCCCTGCACTTACCTCTGCCGGAACTACCCTCAGCCGCATTGCG
TATGGCATTGCTCTCCCTGTGATCTTCATTAGCGGTTCGATCAACACCGTGGTATTTGGGCGTGTGGTGCATGGT
CGCATCTTCGCCAACTCCCCCATTCGCTTCATCAACACTAAGATGGGCTGGCTGACATGGCTGGCGGTGATCACG
GCCGCCACAGTTGTGGCATTCATCATTGCCGAGGTGATACCTTTTTTCAACGACTTGCTTTCAATTTCTTCTGCT
CTTTTTATCTCCGGATTCACCTTCTACTTCCCTGCCATGATGTGGTTCATGCTCCTTCGGAAAGGGAGTTGGAAA
GAGCCCAAGAACTTGATACTGGCAGTCATCAATGCGCTGATTTTCCTGATCGGTATGGTGGTACTTGCTGGAGGA
ACATATTCCAGCATTGATGATATCGTAAGTTTTTCTCTGGCGGTCTGCCTTGGGGCACGGATTTTATTACTAACT
CACTCATCTAGATAATCAAGTACGCCAAAGGAGAAGTTCGTGGCGTCTTTTCGTGCGGTGCTCCCGAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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