Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g5166.t1
Gene name
Locationscaffold_12:77659..78264
Strand-
Gene length (bp)605
Transcript length (bp)549
Coding sequence length (bp)549
Protein length (aa) 183

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 2.09 0.0 4.51
5d_25C Five days - 25 degrees Celsius 1.48 0.0 3.23
7d_25C Seven days - 25 degrees Celsius 0.36 0.0 1.04
10d_25C Ten days - 25 degrees Celsius 0.56 0.0 1.40
7d_15C Seven days - 15 degrees Celsius 1.30 0.0 2.93
7d_30C Seven days - 30 degrees Celsius 0.93 0.0 2.29

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.684335 no
3d_25C 7d_25C 0.154535 no
3d_25C 7d_15C 0.561748 no
3d_25C 7d_30C 0.314241 no
3d_25C 10d_25C 0.205545 no
5d_25C 7d_25C 0.210759 no
5d_25C 7d_15C 0.902970 no
5d_25C 7d_30C 0.617582 no
5d_25C 10d_25C 0.351715 no
7d_25C 7d_15C 0.264892 no
7d_25C 7d_30C 0.436297 no
7d_25C 10d_25C 1.000000 no
7d_15C 7d_30C 0.733623 no
7d_15C 10d_25C 0.419015 no
7d_30C 10d_25C 0.684436 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g5166.t1
MQLKNLAIAASVSAVVSAAPSNQSATFGVVAIHSGSDVQNSAFNAAKSSIFAGLPNQGASCARPKEQEATFYILD
GALYLYDESATPQEIFVDRSGMGQGKIGYTTGAQSSPTNSVREGWTLEDGYLQFAGEDLIACPNSIDGAWSIWAS
AGIANPAGNSDCVGIAASIVETSNPNGCSYTS*
Coding >Pro_DTO377G3_2|g5166.t1
ATGCAGCTCAAGAACCTCGCCATCGCTGCCTCCGTCAGCGCCGTTGTCTCGGCCGCCCCGTCCAACCAGTCTGCG
ACTTTTGGTGTCGTGGCTATTCACTCTGGCAGTGATGTGCAAAACTCTGCCTTCAACGCTGCTAAGAGCAGCATC
TTCGCTGGTCTGCCTAACCAGGGTGCCAGTTGTGCTCGTCCCAAGGAGCAGGAGGCAACCTTCTACATCCTCGAC
GGTGCTCTGTACCTGTATGATGAGTCCGCCACTCCCCAGGAGATCTTCGTTGATCGCTCCGGCATGGGCCAGGGC
AAGATTGGATACACCACTGGTGCTCAGTCCAGCCCCACAAACTCCGTGCGCGAGGGTTGGACCCTCGAGGATGGT
TACCTCCAATTCGCAGGAGAAGATCTGATTGCCTGCCCCAACAGCATTGACGGTGCCTGGAGCATTTGGGCTTCT
GCTGGCATTGCCAACCCTGCTGGAAACTCCGACTGTGTGGGAATTGCCGCTAGTATCGTGGAGACCTCGAACCCC
AATGGCTGCAGCTACACCTCTTAG
Transcript >Pro_DTO377G3_2|g5166.t1
ATGCAGCTCAAGAACCTCGCCATCGCTGCCTCCGTCAGCGCCGTTGTCTCGGCCGCCCCGTCCAACCAGTCTGCG
ACTTTTGGTGTCGTGGCTATTCACTCTGGCAGTGATGTGCAAAACTCTGCCTTCAACGCTGCTAAGAGCAGCATC
TTCGCTGGTCTGCCTAACCAGGGTGCCAGTTGTGCTCGTCCCAAGGAGCAGGAGGCAACCTTCTACATCCTCGAC
GGTGCTCTGTACCTGTATGATGAGTCCGCCACTCCCCAGGAGATCTTCGTTGATCGCTCCGGCATGGGCCAGGGC
AAGATTGGATACACCACTGGTGCTCAGTCCAGCCCCACAAACTCCGTGCGCGAGGGTTGGACCCTCGAGGATGGT
TACCTCCAATTCGCAGGAGAAGATCTGATTGCCTGCCCCAACAGCATTGACGGTGCCTGGAGCATTTGGGCTTCT
GCTGGCATTGCCAACCCTGCTGGAAACTCCGACTGTGTGGGAATTGCCGCTAGTATCGTGGAGACCTCGAACCCC
AATGGCTGCAGCTACACCTCTTAG
Gene >Pro_DTO377G3_2|g5166.t1
ATGCAGCTCAAGAACCTCGCCATCGCTGCCTCCGTCAGCGCCGTTGTCTCGGCCGCCCCGTCCAACCAGTCTGCG
ACTTTTGGTGTCGTGGCTATTCACTCTGGCAGTGATGTGCAAAACTCTGCCTTCAACGCTGCTAAGAGCAGCATC
TTCGCTGGTCTGCCTAACCAGGGTGCCAGTTGTGCTCGTCCCAAGGAGCAGGAGGCAACCTTCTACATCCTCGAC
GGTGCTCTGTACCTGTATGATGAGTCCGCCACTCCCCAGGAGATCTTCGTTGATCGCTCCGGCATGGGTATGCTA
TCACTCTCACAATCCTACTTAGTTGGCAAATAACTGACTTTCATGTAGGCCAGGGCAAGATTGGATACACCACTG
GTGCTCAGTCCAGCCCCACAAACTCCGTGCGCGAGGGTTGGACCCTCGAGGATGGTTACCTCCAATTCGCAGGAG
AAGATCTGATTGCCTGCCCCAACAGCATTGACGGTGCCTGGAGCATTTGGGCTTCTGCTGGCATTGCCAACCCTG
CTGGAAACTCCGACTGTGTGGGAATTGCCGCTAGTATCGTGGAGACCTCGAACCCCAATGGCTGCAGCTACACCT
CTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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