© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5166.t1 |
| Gene name | |
| Location | scaffold_12:77659..78264 |
| Strand | - |
| Gene length (bp) | 605 |
| Transcript length (bp) | 549 |
| Coding sequence length (bp) | 549 |
| Protein length (aa) | 183 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2.09 | 0.0 | 4.51 |
| 5d_25C | Five days - 25 degrees Celsius | 1.48 | 0.0 | 3.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.36 | 0.0 | 1.04 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.56 | 0.0 | 1.40 |
| 7d_15C | Seven days - 15 degrees Celsius | 1.30 | 0.0 | 2.93 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.93 | 0.0 | 2.29 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.684335 | no |
| 3d_25C | 7d_25C | 0.154535 | no |
| 3d_25C | 7d_15C | 0.561748 | no |
| 3d_25C | 7d_30C | 0.314241 | no |
| 3d_25C | 10d_25C | 0.205545 | no |
| 5d_25C | 7d_25C | 0.210759 | no |
| 5d_25C | 7d_15C | 0.902970 | no |
| 5d_25C | 7d_30C | 0.617582 | no |
| 5d_25C | 10d_25C | 0.351715 | no |
| 7d_25C | 7d_15C | 0.264892 | no |
| 7d_25C | 7d_30C | 0.436297 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.733623 | no |
| 7d_15C | 10d_25C | 0.419015 | no |
| 7d_30C | 10d_25C | 0.684436 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5166.t1 MQLKNLAIAASVSAVVSAAPSNQSATFGVVAIHSGSDVQNSAFNAAKSSIFAGLPNQGASCARPKEQEATFYILD GALYLYDESATPQEIFVDRSGMGQGKIGYTTGAQSSPTNSVREGWTLEDGYLQFAGEDLIACPNSIDGAWSIWAS AGIANPAGNSDCVGIAASIVETSNPNGCSYTS* |
| Coding | >Pro_DTO377G3_2|g5166.t1 ATGCAGCTCAAGAACCTCGCCATCGCTGCCTCCGTCAGCGCCGTTGTCTCGGCCGCCCCGTCCAACCAGTCTGCG ACTTTTGGTGTCGTGGCTATTCACTCTGGCAGTGATGTGCAAAACTCTGCCTTCAACGCTGCTAAGAGCAGCATC TTCGCTGGTCTGCCTAACCAGGGTGCCAGTTGTGCTCGTCCCAAGGAGCAGGAGGCAACCTTCTACATCCTCGAC GGTGCTCTGTACCTGTATGATGAGTCCGCCACTCCCCAGGAGATCTTCGTTGATCGCTCCGGCATGGGCCAGGGC AAGATTGGATACACCACTGGTGCTCAGTCCAGCCCCACAAACTCCGTGCGCGAGGGTTGGACCCTCGAGGATGGT TACCTCCAATTCGCAGGAGAAGATCTGATTGCCTGCCCCAACAGCATTGACGGTGCCTGGAGCATTTGGGCTTCT GCTGGCATTGCCAACCCTGCTGGAAACTCCGACTGTGTGGGAATTGCCGCTAGTATCGTGGAGACCTCGAACCCC AATGGCTGCAGCTACACCTCTTAG |
| Transcript | >Pro_DTO377G3_2|g5166.t1 ATGCAGCTCAAGAACCTCGCCATCGCTGCCTCCGTCAGCGCCGTTGTCTCGGCCGCCCCGTCCAACCAGTCTGCG ACTTTTGGTGTCGTGGCTATTCACTCTGGCAGTGATGTGCAAAACTCTGCCTTCAACGCTGCTAAGAGCAGCATC TTCGCTGGTCTGCCTAACCAGGGTGCCAGTTGTGCTCGTCCCAAGGAGCAGGAGGCAACCTTCTACATCCTCGAC GGTGCTCTGTACCTGTATGATGAGTCCGCCACTCCCCAGGAGATCTTCGTTGATCGCTCCGGCATGGGCCAGGGC AAGATTGGATACACCACTGGTGCTCAGTCCAGCCCCACAAACTCCGTGCGCGAGGGTTGGACCCTCGAGGATGGT TACCTCCAATTCGCAGGAGAAGATCTGATTGCCTGCCCCAACAGCATTGACGGTGCCTGGAGCATTTGGGCTTCT GCTGGCATTGCCAACCCTGCTGGAAACTCCGACTGTGTGGGAATTGCCGCTAGTATCGTGGAGACCTCGAACCCC AATGGCTGCAGCTACACCTCTTAG |
| Gene | >Pro_DTO377G3_2|g5166.t1 ATGCAGCTCAAGAACCTCGCCATCGCTGCCTCCGTCAGCGCCGTTGTCTCGGCCGCCCCGTCCAACCAGTCTGCG ACTTTTGGTGTCGTGGCTATTCACTCTGGCAGTGATGTGCAAAACTCTGCCTTCAACGCTGCTAAGAGCAGCATC TTCGCTGGTCTGCCTAACCAGGGTGCCAGTTGTGCTCGTCCCAAGGAGCAGGAGGCAACCTTCTACATCCTCGAC GGTGCTCTGTACCTGTATGATGAGTCCGCCACTCCCCAGGAGATCTTCGTTGATCGCTCCGGCATGGGTATGCTA TCACTCTCACAATCCTACTTAGTTGGCAAATAACTGACTTTCATGTAGGCCAGGGCAAGATTGGATACACCACTG GTGCTCAGTCCAGCCCCACAAACTCCGTGCGCGAGGGTTGGACCCTCGAGGATGGTTACCTCCAATTCGCAGGAG AAGATCTGATTGCCTGCCCCAACAGCATTGACGGTGCCTGGAGCATTTGGGCTTCTGCTGGCATTGCCAACCCTG CTGGAAACTCCGACTGTGTGGGAATTGCCGCTAGTATCGTGGAGACCTCGAACCCCAATGGCTGCAGCTACACCT CTTAG |