Protein ID | Pro_DTO377G3_2|g5141.t1 |
Gene name | |
Location | scaffold_12:7330..8486 |
Strand | + |
Gene length (bp) | 1156 |
Transcript length (bp) | 1059 |
Coding sequence length (bp) | 1059 |
Protein length (aa) | 353 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF12171 | zf-C2H2_jaz | Zinc-finger double-stranded RNA-binding | 1.4E-05 | 153 | 178 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 1.6E-03 | 3 | 21 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 3.9E-03 | 124 | 145 |
PF12874 | zf-met | Zinc-finger of C2H2 type | 7.6E-04 | 153 | 176 |
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 6.1E-02 | 4 | 20 |
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 6.0E-02 | 66 | 85 |
PF13912 | zf-C2H2_6 | C2H2-type zinc finger | 1.2E-03 | 153 | 171 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 46 | 0.45 |
Transcription Factor Class (based on PFAM domains) |
---|
C2H2 zinc finger |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g5141.t1 MAFCSSCNRSFRSETSLDQHIKDSPAHAIKFYCGLCSIWLLDIDALEEHIRTSPPHSAPTRNTSKFKCDICSTTF VSQNFLNDHLQYSPLNATSFAHKLYSLVYLTRKELEENLQNLQAHTPNFECKSCTRLFNDQSALDRHLQSSSAHT PTFECDPCDRSFVSQDALDAHIQSSKAHAGERHGVPLQGYRSNPTPLDIFFAYYTSFKYDPTLPPSVSYAKLVDF YDWDRNDPEARTARREYQNSLEDEVRLWFGSESDLASWHSLCRAVGIEPLPRTCNAARVAIRNVYVNIVDLIHWA RMGLGDRPVHRFKNIGELSQYTKLTNKFYSCRGPEKGEDNVVLRHLLRHILS* |
Coding | >Pro_DTO377G3_2|g5141.t1 ATGGCATTCTGTTCCTCGTGCAATCGATCGTTCAGATCCGAGACCTCCCTTGACCAACACATAAAAGACTCACCA GCCCATGCTATAAAGTTCTACTGTGGCCTATGTTCGATCTGGCTCCTCGACATTGATGCTCTTGAAGAACACATC CGAACCTCCCCTCCTCACAGTGCACCCACGCGCAACACATCCAAGTTCAAGTGCGATATCTGCTCGACAACTTTT GTTAGCCAGAACTTCCTTAACGACCATCTCCAGTACTCACCTCTGAATGCCACCTCATTCGCACACAAACTTTAC AGTTTAGTCTACCTTACACGAAAAGAATTAGAAGAAAATCTCCAGAATTTACAAGCGCATACTCCAAACTTTGAA TGCAAATCTTGTACACGCCTCTTCAATGACCAGAGCGCTCTTGATCGGCATCTTCAGTCTTCGTCGGCTCATACC CCAACTTTCGAATGTGATCCATGCGATCGATCATTCGTCAGTCAAGATGCGCTAGATGCACATATACAAAGCTCG AAAGCTCACGCTGGAGAACGTCACGGTGTCCCTTTACAAGGATATCGTTCAAACCCCACACCACTAGACATCTTT TTCGCATACTATACATCCTTCAAATACGACCCCACACTTCCACCGTCCGTATCATACGCAAAGCTCGTGGACTTC TACGACTGGGATAGAAACGACCCGGAAGCTCGAACAGCACGCAGGGAGTATCAAAATTCACTGGAAGATGAAGTC CGACTCTGGTTTGGGTCGGAGAGCGATCTTGCTTCCTGGCATTCTCTTTGTCGGGCTGTTGGGATTGAACCATTG CCTAGGACTTGTAATGCTGCTAGAGTGGCTATCCGAAATGTATATGTCAATATTGTTGATTTGATTCATTGGGCT CGTATGGGGCTGGGAGATAGGCCGGTTCACCGGTTTAAGAATATTGGGGAGCTGAGTCAATATACTAAGCTCACG AATAAGTTCTATTCCTGTAGAGGTCCTGAAAAAGGGGAGGATAATGTTGTTCTTCGACATTTGCTTCGCCATATC CTTTCCTAA |
Transcript | >Pro_DTO377G3_2|g5141.t1 ATGGCATTCTGTTCCTCGTGCAATCGATCGTTCAGATCCGAGACCTCCCTTGACCAACACATAAAAGACTCACCA GCCCATGCTATAAAGTTCTACTGTGGCCTATGTTCGATCTGGCTCCTCGACATTGATGCTCTTGAAGAACACATC CGAACCTCCCCTCCTCACAGTGCACCCACGCGCAACACATCCAAGTTCAAGTGCGATATCTGCTCGACAACTTTT GTTAGCCAGAACTTCCTTAACGACCATCTCCAGTACTCACCTCTGAATGCCACCTCATTCGCACACAAACTTTAC AGTTTAGTCTACCTTACACGAAAAGAATTAGAAGAAAATCTCCAGAATTTACAAGCGCATACTCCAAACTTTGAA TGCAAATCTTGTACACGCCTCTTCAATGACCAGAGCGCTCTTGATCGGCATCTTCAGTCTTCGTCGGCTCATACC CCAACTTTCGAATGTGATCCATGCGATCGATCATTCGTCAGTCAAGATGCGCTAGATGCACATATACAAAGCTCG AAAGCTCACGCTGGAGAACGTCACGGTGTCCCTTTACAAGGATATCGTTCAAACCCCACACCACTAGACATCTTT TTCGCATACTATACATCCTTCAAATACGACCCCACACTTCCACCGTCCGTATCATACGCAAAGCTCGTGGACTTC TACGACTGGGATAGAAACGACCCGGAAGCTCGAACAGCACGCAGGGAGTATCAAAATTCACTGGAAGATGAAGTC CGACTCTGGTTTGGGTCGGAGAGCGATCTTGCTTCCTGGCATTCTCTTTGTCGGGCTGTTGGGATTGAACCATTG CCTAGGACTTGTAATGCTGCTAGAGTGGCTATCCGAAATGTATATGTCAATATTGTTGATTTGATTCATTGGGCT CGTATGGGGCTGGGAGATAGGCCGGTTCACCGGTTTAAGAATATTGGGGAGCTGAGTCAATATACTAAGCTCACG AATAAGTTCTATTCCTGTAGAGGTCCTGAAAAAGGGGAGGATAATGTTGTTCTTCGACATTTGCTTCGCCATATC CTTTCCTAA |
Gene | >Pro_DTO377G3_2|g5141.t1 ATGGCATTCTGTTCCTCGTGCAATCGATCGTTCAGATCCGAGACCTCCCTTGACCAACACATAAAAGACTCACCA GCCCATGCTATAAAGTTCTACTGTGGCCTATGTTCGATCTGGCTCCTCGACATTGATGCTCTTGAAGAACACATC CGAACCTCCCCTCCTCACAGTGCACCCACGCGCAACACATCCAAGTTCAAGTGCGATATCTGCTCGACAACTTTT GTTAGCCAGAACTTCCTTAACGACCATCTCCAGTACTCACCTCTGAATGCCACCTCATTCGCACACAAACTTTAC AGTTTAGTCTACCTTACACGAAAAGAATTAGAAGAAAATCTCCAGAATTTACAAGCGCATACTCCAAACTTTGAA TGCAAATCTTGTACACGCCTCTTCAATGACCAGAGCGCTCTTGATCGGCATCTTCAGTCTTCGTCGGCTCATACC CCAACTTTCGAATGTGATCCATGCGATCGATCATTCGTCAGTCAAGATGCGCTAGATGCACATATACAAAGCTCG AAAGCTCACGCTGGAGAACGTCACGGTGTCCCTTTACAAGGATATCGTTCAAACCCCACACCACTAGACATCTTT TTCGCATACTATACATCCTTCAAATACGACCCCACACTTCCACCGTCCGTATCATACGCAAAGCTCGTGGACTTC TACGACTGGGATAGAAACGACCCGGAAGCTCGAACAGCACGCAGGGAGTATCAAAATTCACTGGAAGATGAAGTC CGACTCTGGTTTGGGTCGGAGAGCGATCTTGCTTCCTGGCATTCTCTTTGTCGGGCTGTTGGGATTGAACCATTG CCTAGGACTTGTAATGCTGCTAGAGTGGTATGTAAAAATTATTTCCCTATCTTCTTACCTGTGGGGTTTGACTTT ATGGAATGGGACATGGACTGGTGGCTGACGTCGTCTGCGTTCTATTTAGGCTATCCGAAATGTATATGTCAATAT TGTTGATTTGATTCATTGGGCTCGTATGGGGCTGGGAGATAGGCCGGTTCACCGGTTTAAGAATATTGGGGAGCT GAGTCAATATACTAAGCTCACGAATAAGTTCTATTCCTGTAGAGGTCCTGAAAAAGGGGAGGATAATGTTGTTCT TCGACATTTGCTTCGCCATATCCTTTCCTAA |