© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g5136.t1 |
| Gene name | |
| Location | scaffold_11:670524..671358 |
| Strand | - |
| Gene length (bp) | 834 |
| Transcript length (bp) | 528 |
| Coding sequence length (bp) | 528 |
| Protein length (aa) | 176 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00160 | Pro_isomerase | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1.9E-44 | 24 | 173 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000413 | protein peptidyl-prolyl isomerization | Yes |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019538 | protein metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0036211 | protein modification process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0018208 | peptidyl-proline modification | No |
| GO:0003824 | catalytic activity | No |
| GO:0043412 | macromolecule modification | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016853 | isomerase activity | No |
| GO:0018193 | peptidyl-amino acid modification | No |
| GO:0016859 | cis-trans isomerase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 2741.79 | 1495.63 | 3987.95 |
| 5d_25C | Five days - 25 degrees Celsius | 3260.98 | 1741.65 | 4780.31 |
| 7d_25C | Seven days - 25 degrees Celsius | 2924.43 | 1569.21 | 4279.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 3129.06 | 1676.21 | 4581.91 |
| 7d_15C | Seven days - 15 degrees Celsius | 5110.51 | 2531.99 | 7689.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 1858.16 | 1014.70 | 2701.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.571597 | no |
| 3d_25C | 7d_25C | 0.862042 | no |
| 3d_25C | 7d_15C | 0.012904 | yes |
| 3d_25C | 7d_30C | 0.118422 | no |
| 3d_25C | 10d_25C | 0.685200 | no |
| 5d_25C | 7d_25C | 0.753660 | no |
| 5d_25C | 7d_15C | 0.095402 | no |
| 5d_25C | 7d_30C | 0.018295 | yes |
| 5d_25C | 10d_25C | 0.916224 | no |
| 7d_25C | 7d_15C | 0.035449 | yes |
| 7d_25C | 7d_30C | 0.063693 | no |
| 7d_25C | 10d_25C | 0.854589 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.066303 | no |
| 7d_30C | 10d_25C | 0.035014 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5136.t1 MSTPNTTAFFEVQYAPAGSSTPKIGRINFKLYPDEVPKTAKNFAELCNAKQGEGYKGSSFHRVIPQFMLQGGDFT RGNGTGGRSIYGEKFPDENFVHKHTRPGLLSMANAGPNTNGSQFFITTVATSWLDGKHVVFGEVADNESLKVVKE IEALGSSSGSIRSAVKPTIVNCGGN* |
| Coding | >Pro_DTO377G3_2|g5136.t1 ATGTCCACCCCCAACACTACCGCTTTCTTCGAGGTCCAGTACGCCCCTGCTGGCTCCTCTACCCCCAAGATTGGC CGCATCAACTTCAAGCTCTACCCCGACGAGGTCCCTAAGACTGCCAAGAACTTCGCTGAGCTTTGCAACGCCAAG CAGGGTGAGGGCTACAAGGGCTCTTCCTTCCACCGTGTCATCCCCCAGTTCATGCTCCAGGGTGGTGACTTCACC CGTGGCAACGGTACCGGTGGCCGCTCCATCTACGGCGAGAAGTTCCCCGATGAGAACTTCGTCCACAAGCACACC CGCCCTGGTCTTCTGTCCATGGCCAACGCTGGCCCCAACACAAACGGCTCCCAGTTCTTCATCACCACTGTTGCC ACCTCGTGGCTCGATGGCAAGCACGTCGTCTTCGGCGAGGTCGCTGATAATGAGTCCCTGAAGGTTGTCAAGGAG ATCGAGGCCCTCGGCTCCTCCTCCGGCTCCATCCGCTCCGCTGTCAAGCCCACCATCGTCAACTGCGGTGGCAAC TAA |
| Transcript | >Pro_DTO377G3_2|g5136.t1 ATGTCCACCCCCAACACTACCGCTTTCTTCGAGGTCCAGTACGCCCCTGCTGGCTCCTCTACCCCCAAGATTGGC CGCATCAACTTCAAGCTCTACCCCGACGAGGTCCCTAAGACTGCCAAGAACTTCGCTGAGCTTTGCAACGCCAAG CAGGGTGAGGGCTACAAGGGCTCTTCCTTCCACCGTGTCATCCCCCAGTTCATGCTCCAGGGTGGTGACTTCACC CGTGGCAACGGTACCGGTGGCCGCTCCATCTACGGCGAGAAGTTCCCCGATGAGAACTTCGTCCACAAGCACACC CGCCCTGGTCTTCTGTCCATGGCCAACGCTGGCCCCAACACAAACGGCTCCCAGTTCTTCATCACCACTGTTGCC ACCTCGTGGCTCGATGGCAAGCACGTCGTCTTCGGCGAGGTCGCTGATAATGAGTCCCTGAAGGTTGTCAAGGAG ATCGAGGCCCTCGGCTCCTCCTCCGGCTCCATCCGCTCCGCTGTCAAGCCCACCATCGTCAACTGCGGTGGCAAC TAA |
| Gene | >Pro_DTO377G3_2|g5136.t1 ATGTCCACCCCCAACACTACCGCTTTCTTCGAGGTCCAGTACGCCCCTGCTGGCTCCTCTACCCGTAAGTTTTCC TGTTATTCTCGTTTCCGGCGGGGCAGGGAGTTTTTGCCTCCGCGCTCCAGCCTCACCTTGCTGTCTCCAACCTTC AGCTTTCAATGCTAGCATCAAAGCTTGGAGGTTTCACATCATGTCTCAGTAATTGGAATTGAAATTGATGCTAAC TCCTCATTAGCCAAGATTGGCCGCATCAACTTCAAGCTCTACCCCGACGAGGTCCCTAAGACTGCCAAGAACTTC GCTGAGCTTTGCAACGCCAAGCAGGGTGAGGGCTACAAGGGCTCTTCCTTCCACCGTGTCATCCCCCAGTTCATG CTCCAGGGTGGTGACTTCACCCGTGGCAACGTAAGTTTTCTAATCCTGACAACCGCCTAATGCTCGGTATCTGAT TTTGATTTTACCGGAATAGGGTACCGGTGGCCGCTCCATCTACGGCGAGAAGTTCCCCGATGAGAACTTCGTCCA CAAGCACACCCGCCCTGGTCTTCTGTCCATGGCCAACGCTGGCCCCAACACGTAAGTCTCAGTCTTGTATCCCGG CTGGTCTACATCCAGAGAACCATACTGACCGTTTCCCTCTTTTCTAGAAACGGCTCCCAGTTCTTCATCACCACT GTTGCCACCTCGTGGCTCGATGGCAAGCACGTCGTCTTCGGCGAGGTCGCTGATAATGAGTCCCTGAAGGTTGTC AAGGAGATCGAGGCCCTCGGCTCCTCCTCCGGCTCCATCCGCTCCGCTGTCAAGCCCACCATCGTCAACTGCGGT GGCAACTAA |