© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g5095.t1 |
| Gene name | |
| Location | scaffold_11:550273..551810 |
| Strand | - |
| Gene length (bp) | 1537 |
| Transcript length (bp) | 1473 |
| Coding sequence length (bp) | 1473 |
| Protein length (aa) | 491 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 1.3E-31 | 110 | 440 |
| PF00083 | Sugar_tr | Sugar (and other) transporter | 9.8E-09 | 331 | 473 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 96 | 118 | 22 |
| 2 | 138 | 158 | 20 |
| 3 | 165 | 187 | 22 |
| 4 | 192 | 214 | 22 |
| 5 | 221 | 243 | 22 |
| 6 | 253 | 275 | 22 |
| 7 | 302 | 324 | 22 |
| 8 | 334 | 356 | 22 |
| 9 | 363 | 385 | 22 |
| 10 | 390 | 412 | 22 |
| 11 | 425 | 447 | 22 |
| 12 | 457 | 479 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.14 | 2.58 | 11.71 |
| 5d_25C | Five days - 25 degrees Celsius | 2.69 | 0.55 | 4.83 |
| 7d_25C | Seven days - 25 degrees Celsius | 3.16 | 0.71 | 5.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.84 | 0.00 | 1.73 |
| 7d_15C | Seven days - 15 degrees Celsius | 2.09 | 0.29 | 3.90 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.06 | 0.00 | 2.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.009446 | yes |
| 3d_25C | 7d_25C | 0.033480 | yes |
| 3d_25C | 7d_15C | 0.006742 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.779953 | no |
| 5d_25C | 7d_15C | 0.673740 | no |
| 5d_25C | 7d_30C | 0.071215 | no |
| 5d_25C | 10d_25C | 0.031528 | yes |
| 7d_25C | 7d_15C | 0.440407 | no |
| 7d_25C | 7d_30C | 0.032838 | yes |
| 7d_25C | 10d_25C | 0.014676 | yes |
| 7d_15C | 7d_30C | 0.233440 | no |
| 7d_15C | 10d_25C | 0.101730 | no |
| 7d_30C | 10d_25C | 0.759288 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g5095.t1 MSTNVGSAGGKTGDHEFDILNTNQSATSFDQKTTAHMVNEKFDTEAAPEQEPSLDDVYRTASTVAPSQRSARRDP ISRATTDAEGNIYPEGGLEAWLVVLGSFLGLFGSLGLVNTIATFQAYIQTHQLKEYSSGTNGWIFGMFAFLTFFC GVQVGPIFDARGPRILVFVGSVFEMAMIILLGFCTEYWHFMMVIGVLGGVGASLIFTPAVSAIGHYFYEKRGVAT GVAATGGSVGGIVFPLILEALFPKIGWAWATRVVALICLVVLSIANLLIRSRLPQKPFSKENVLPDFRIFRDPRF VLTTASVFFIEWGLFVPISYISSYALDHGFSSKFSYQIIAVLNAGSFFGRWLPGFFADFLGRFNTLIATVALCVL CNACLWLPAGDSMPLLIVYAVIFGFSSGSNISLTPVCVGQLCKTEHYGRYYATAYTIVSFGTLTGIPIAGEILAR CDGSYWGLITFTVCCYAAGLACCTAVKVIEVGWRHPLAIY* |
| Coding | >Pro_DTO377G3_2|g5095.t1 ATGTCTACCAATGTCGGGTCTGCCGGCGGCAAGACCGGCGATCATGAATTCGATATTTTGAACACCAACCAGAGC GCCACATCCTTTGACCAGAAGACTACTGCTCACATGGTCAATGAGAAGTTTGACACGGAGGCTGCACCAGAGCAA GAACCCAGCCTAGATGATGTATACCGGACAGCATCCACCGTGGCACCATCTCAGAGATCAGCCAGAAGAGACCCC ATTAGTCGAGCGACTACAGACGCTGAAGGGAACATCTACCCCGAGGGAGGACTCGAAGCCTGGCTGGTAGTGCTG GGCAGCTTCCTCGGTCTCTTTGGATCGTTGGGCCTGGTCAACACCATTGCCACATTTCAAGCATATATCCAAACC CATCAACTAAAGGAATACAGCTCAGGAACCAATGGCTGGATTTTCGGAATGTTTGCCTTTCTCACTTTCTTCTGT GGAGTGCAGGTCGGTCCCATCTTTGATGCTCGAGGCCCACGTATTCTTGTCTTCGTGGGTTCCGTGTTTGAAATG GCCATGATCATCCTGCTCGGCTTCTGCACTGAATACTGGCACTTTATGATGGTCATCGGTGTACTGGGTGGAGTG GGAGCGTCCCTCATTTTCACACCGGCGGTCTCGGCGATTGGCCACTATTTCTATGAGAAACGTGGAGTTGCGACT GGCGTTGCTGCCACTGGCGGCTCTGTCGGAGGCATTGTTTTCCCTCTGATTCTAGAAGCTCTATTCCCCAAGATT GGCTGGGCCTGGGCCACTCGGGTTGTTGCGTTGATCTGTCTGGTTGTGCTATCAATTGCAAACCTCTTGATCAGG TCTCGACTCCCGCAGAAGCCATTTTCCAAGGAGAACGTGCTTCCTGACTTCCGCATCTTTCGAGACCCGCGGTTC GTACTTACTACCGCCAGCGTCTTCTTTATTGAGTGGGGTCTTTTCGTGCCAATTAGCTACATCTCATCCTACGCC CTCGACCATGGTTTCTCTAGCAAGTTCTCATACCAGATAATTGCCGTCTTGAATGCCGGCTCATTCTTTGGGCGA TGGCTGCCAGGATTCTTTGCCGATTTTCTTGGTCGCTTTAACACTTTGATCGCGACGGTAGCGCTCTGCGTGCTC TGTAACGCCTGCCTGTGGCTTCCCGCTGGAGATAGTATGCCTCTGCTGATCGTTTACGCTGTTATTTTTGGATTC TCAAGCGGCAGCAATATCAGCCTGACGCCAGTCTGTGTCGGCCAACTCTGCAAAACCGAACACTATGGCCGGTAT TACGCAACTGCCTATACCATAGTGAGCTTCGGAACTCTCACCGGAATCCCTATTGCAGGTGAGATCCTGGCACGC TGTGATGGGTCTTACTGGGGCCTTATCACCTTTACCGTATGCTGCTATGCGGCTGGTCTTGCATGCTGTACCGCC GTGAAGGTCATTGAAGTTGGCTGGCGTCACCCTCTCGCGATCTATTAA |
| Transcript | >Pro_DTO377G3_2|g5095.t1 ATGTCTACCAATGTCGGGTCTGCCGGCGGCAAGACCGGCGATCATGAATTCGATATTTTGAACACCAACCAGAGC GCCACATCCTTTGACCAGAAGACTACTGCTCACATGGTCAATGAGAAGTTTGACACGGAGGCTGCACCAGAGCAA GAACCCAGCCTAGATGATGTATACCGGACAGCATCCACCGTGGCACCATCTCAGAGATCAGCCAGAAGAGACCCC ATTAGTCGAGCGACTACAGACGCTGAAGGGAACATCTACCCCGAGGGAGGACTCGAAGCCTGGCTGGTAGTGCTG GGCAGCTTCCTCGGTCTCTTTGGATCGTTGGGCCTGGTCAACACCATTGCCACATTTCAAGCATATATCCAAACC CATCAACTAAAGGAATACAGCTCAGGAACCAATGGCTGGATTTTCGGAATGTTTGCCTTTCTCACTTTCTTCTGT GGAGTGCAGGTCGGTCCCATCTTTGATGCTCGAGGCCCACGTATTCTTGTCTTCGTGGGTTCCGTGTTTGAAATG GCCATGATCATCCTGCTCGGCTTCTGCACTGAATACTGGCACTTTATGATGGTCATCGGTGTACTGGGTGGAGTG GGAGCGTCCCTCATTTTCACACCGGCGGTCTCGGCGATTGGCCACTATTTCTATGAGAAACGTGGAGTTGCGACT GGCGTTGCTGCCACTGGCGGCTCTGTCGGAGGCATTGTTTTCCCTCTGATTCTAGAAGCTCTATTCCCCAAGATT GGCTGGGCCTGGGCCACTCGGGTTGTTGCGTTGATCTGTCTGGTTGTGCTATCAATTGCAAACCTCTTGATCAGG TCTCGACTCCCGCAGAAGCCATTTTCCAAGGAGAACGTGCTTCCTGACTTCCGCATCTTTCGAGACCCGCGGTTC GTACTTACTACCGCCAGCGTCTTCTTTATTGAGTGGGGTCTTTTCGTGCCAATTAGCTACATCTCATCCTACGCC CTCGACCATGGTTTCTCTAGCAAGTTCTCATACCAGATAATTGCCGTCTTGAATGCCGGCTCATTCTTTGGGCGA TGGCTGCCAGGATTCTTTGCCGATTTTCTTGGTCGCTTTAACACTTTGATCGCGACGGTAGCGCTCTGCGTGCTC TGTAACGCCTGCCTGTGGCTTCCCGCTGGAGATAGTATGCCTCTGCTGATCGTTTACGCTGTTATTTTTGGATTC TCAAGCGGCAGCAATATCAGCCTGACGCCAGTCTGTGTCGGCCAACTCTGCAAAACCGAACACTATGGCCGGTAT TACGCAACTGCCTATACCATAGTGAGCTTCGGAACTCTCACCGGAATCCCTATTGCAGGTGAGATCCTGGCACGC TGTGATGGGTCTTACTGGGGCCTTATCACCTTTACCGTATGCTGCTATGCGGCTGGTCTTGCATGCTGTACCGCC GTGAAGGTCATTGAAGTTGGCTGGCGTCACCCTCTCGCGATCTATTAA |
| Gene | >Pro_DTO377G3_2|g5095.t1 ATGTCTACCAATGTCGGGTCTGCCGGCGGCAAGACCGGCGATCATGAATTCGATATTTTGAACACCAACCAGAGC GCCACATCCTTTGACCAGAAGACTACTGCTCACATGGTCAATGAGAAGTTTGACACGGAGGCTGCACCAGAGCAA GAACCCAGCCTAGATGATGTATACCGGACAGCATCCACCGTGGCACCATCTCAGAGATCAGCCAGAAGAGACCCC ATTAGTCGAGCGACTACAGACGCTGAAGGGAACATCTACCCCGAGGGAGGACTCGAAGCCTGGCTGGTAGTGCTG GGCAGCTTCCTCGGTCTCTTTGGATCGTTGGGCCTGGTCAACACCATTGCCACATTTCAAGCATATATCCAAACC CATCAACTAAAGGAATACAGCTCAGGAACCAATGGCTGGATTTTCGGAATGTTTGCCTTTCTCACTTTCTTCTGT GGAGTGCAGGTCGGTCCCATCTTTGATGCTCGAGGCCCACGTATTCTTGTCTTCGTGGGTTCCGTGTTTGAAATG GCCATGATCATCCTGCTCGGCTTCTGCACTGAATACTGGCACTTTATGATGGTCATCGGTGTACTGGGTGGAGTG GGAGCGTCCCTCATTTTCACACCGGCGGTCTCGGCGATTGGCCACTATTTCTATGAGAAACGTGGAGTTGCGACT GGCGTTGCTGCCACTGGCGGCTCTGTCGGAGGCATTGTTTTCCCTCTGATTCTAGAAGCTCTATTCCCCAAGATT GGCTGGGCCTGGGCCACTCGGGTTGTTGCGTTGATCTGTCTGGTTGTGCTATCAATTGCAAACCTCTTGATCAGG TCTCGACTCCCGCAGAAGCCATTTTCCAAGGAGAACGTGCTTCCTGACTTCCGCATCTTTCGAGACCCGCGGTTC GTACTTACTACCGCCAGCGTCTTCTTTATTGAGTGGGGTCTTTTCGTGCCAATTAGCTACATCTCATCCTACGCC CTCGACCATGGTTTCTCTAGCAAGTTCTCATACCAGATAATTGCCGTCTTGAATGCCGGCTCATTCTTTGGGCGA TGGCTGCCAGGATTCTTTGCCGATTTTCTTGGTCGCTTTAACACTTTGATCGCGACGGTAGCGCTCTGCGTGCTC TGTAACGCCTGCCTGTGGCTTCCCGCTGGAGATAGTATGCCTCTGCTGATCGTTTACGCTGTTATTTTTGGATTC TCAAGCGGCAGCAATATCAGCCTGACGCCAGTCTGTGTCGGCCAACTCTGCAAAACCGAACACTATGGCCGGTAT TACGCAACTGCCTATACCATAGTGAGCTTCGGGTGAGTTTTTTTTTTACTTGTGATGTCACTTGCGTATCTATAA CTGACATACGTTTGCCACCAGAACTCTCACCGGAATCCCTATTGCAGGTGAGATCCTGGCACGCTGTGATGGGTC TTACTGGGGCCTTATCACCTTTACCGTATGCTGCTATGCGGCTGGTCTTGCATGCTGTACCGCCGTGAAGGTCAT TGAAGTTGGCTGGCGTCACCCTCTCGCGATCTATTAA |